Examples with PatchStack ini.trakem2.imaging.PatchStack used on opensource projects

Example 6 with PatchStack

use of ini.trakem2.imaging.PatchStack in project TrakEM2 by trakem2.

the class PatchStack method resetNonActive.

/**
 * Reset temporary changes such as from dragging B&C sliders and so on, in the current slice (the current Patch).
 */
public void resetNonActive() {
    Utils.log2("PatchStack: calling reset");
    // remake the awt for the patch, flush the previous awt
    Loader loader = patch[currentSlice - 1].getProject().getLoader();
    for (int i = 0; i < patch.length; i++) {
        if (currentSlice - 1 == i || !called[i])
            continue;
        called[i] = false;
        ImagePlus imp = loader.fetchImagePlus(patch[i]);
        ImageProcessor ip = imp.getProcessor();
        switch(// as in ij.plugin.frame.ContrastAdjuster.reset(ImagePlus, ImageProcessor)
        imp.getType()) {
            case ImagePlus.COLOR_RGB:
                ip.reset();
                break;
            case ImagePlus.GRAY16:
            case ImagePlus.GRAY32:
                ip.resetMinAndMax();
                break;
        }
        patch[i].setMinAndMax(ip.getMin(), ip.getMax());
        patch[i].getProject().getLoader().decacheAWT(patch[i].getId());
        Display.repaint(patch[i].getLayer(), patch[i], null, 0, true);
    }
}

Example 7 with PatchStack

use of ini.trakem2.imaging.PatchStack in project TrakEM2 by trakem2.

the class PatchStack method setProcessor.

public void setProcessor(String title, ImageProcessor ip) {
    // so not applied to stacks
    if (1 != patch.length)
        return;
    Loader loader = patch[currentSlice - 1].getProject().getLoader();
    ImagePlus imp = loader.fetchImagePlus(patch[currentSlice - 1]);
    if (ip.getWidth() != imp.getWidth() || ip.getHeight() != imp.getHeight())
        throw new IllegalArgumentException("PatchStack: ip wrong size");
    // null means don't touch title
    imp.setProcessor(null, ip);
    patch[currentSlice - 1].updateInDatabase("tiff_working");
// loader.vacuum();
// repainting elsewhere
}

Example 8 with PatchStack

use of ini.trakem2.imaging.PatchStack in project TrakEM2 by trakem2.

the class PatchStack method saveImages.

/**
 * Store working copies and remake the awts and repaint.
 */
public void saveImages() {
    Utils.log2("PatchStack: calling saveImages");
    if (!this.changes) {
        Utils.log2("PatchStack.saveImages: nothing changed.");
        return;
    }
    Loader loader = patch[currentSlice - 1].getProject().getLoader();
    Utils.showProgress(0);
    for (int i = 0; i < patch.length; i++) {
        ImagePlus imp = loader.fetchImagePlus(patch[i]);
        Utils.log2("PatchStack.saveImages: patch imp " + i + " has the imp.changes=" + imp.changes + " and the called[i]=" + called[i]);
        if (imp.changes || called[i]) {
            // may be doing it twice, check TODO
            patch[i].updateInDatabase("tiff_working");
            /*
				patch[i].createImage(); //flushes the old awt, and creates the new one, and stores it in the cache.
				*/
            // just flush away all dependent images, will be recreated when needed on repaint
            patch[i].getProject().getLoader().decache(imp);
            Display.repaint(patch[i].getLayer(), patch[i], 0);
            // reset
            imp.changes = false;
            called[i] = false;
        }
        Utils.showProgress((i + 1.0) / patch.length);
    }
    this.changes = false;
    // patch[0].getProject().getLoader().vacuum();
    Utils.showProgress(1);
}