Examples with ResidueJsonLoader io.loaders.json.ResidueJsonLoader used on opensource projects

Example 6 with ResidueJsonLoader

use of io.loaders.json.ResidueJsonLoader in project Smiles2Monomers by yoann-dufresne.

the class ResidueCreatorTests method linksLoadingTest.

@Test
public void linksLoadingTest() {
    ResidueJsonLoader rjl = new ResidueJsonLoader(this.rules, this.monos);
    rjl.saveFile(this.families, "tmp.json");
    Residue.resetResidues();
    FamilyDB loaded = rjl.loadFile("tmp.json");
    new File("tmp.json").delete();
    Family famTyr = null;
    try {
        famTyr = loaded.getObject("Tyr");
    } catch (NullPointerException e) {
        e.printStackTrace();
    }
    Residue tyrN = null;
    for (Residue res : famTyr.getResidues()) if ("Tyr_pepN".equals(res.getName())) {
        tyrN = res;
        break;
    }
    Entry<IAtom, Rule> entry = tyrN.getAtomicLinks().entrySet().iterator().next();
    IAtom a = entry.getKey();
    Assert.assertEquals(a.getSymbol(), "N");
}

Example 7 with ResidueJsonLoader

use of io.loaders.json.ResidueJsonLoader in project Smiles2Monomers by yoann-dufresne.

the class LoadersTests method setUp.

@Before
public void setUp() throws Exception {
    this.jsonMonos = new MonomersJsonLoader().loadFile("data_tests/monos.json");
    this.jsonRules = RulesJsonLoader.loader.loadFile("data_tests/rules.json");
    ResidueJsonLoader rjl = new ResidueJsonLoader(jsonRules, this.jsonMonos);
    this.jsonFamilies = rjl.loadFile("data_tests/res.json");
}