use of java.awt.Graphics in project vcell by virtualcell.
the class MolecularTypePropertiesPanel method initialize.
private void initialize() {
JPanel leftPanel = new JPanel();
leftPanel.setLayout(new GridBagLayout());
// leftPanel.setBackground(Color.white);
anchorPanel = new JAnchorPanel();
anchorScrollPanel = new JScrollPane(anchorPanel);
molecularTypeTree = new BioModelNodeEditableTree();
molecularTypeTreeModel = new MolecularTypeTreeModel(molecularTypeTree);
molecularTypeTree.setModel(molecularTypeTreeModel);
molecularTypeTree.setEditable(true);
molecularTypeTree.setCellRenderer(new RbmMolecularTypeTreeCellRenderer(molecularTypeTree, issueManager));
molecularTypeTree.setCellEditor(new RbmMolecularTypeTreeCellEditor(molecularTypeTree));
int rowHeight = molecularTypeTree.getRowHeight();
if (rowHeight < 10) {
rowHeight = 20;
}
molecularTypeTree.setRowHeight(rowHeight + 2);
molecularTypeTree.getSelectionModel().setSelectionMode(TreeSelectionModel.SINGLE_TREE_SELECTION);
ToolTipManager.sharedInstance().registerComponent(molecularTypeTree);
molecularTypeTree.addTreeSelectionListener(eventHandler);
molecularTypeTree.addTreeWillExpandListener(eventHandler);
molecularTypeTree.addMouseListener(eventHandler);
molecularTypeTree.setLargeModel(true);
molecularTypeTree.setRootVisible(true);
setLayout(new GridBagLayout());
int gridy = 0;
GridBagConstraints gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.weightx = 1.0;
gbc.insets = new Insets(4, 4, 4, 4);
titleLabel = new JLabel("Construct Solid Geometry");
titleLabel.setFont(titleLabel.getFont().deriveFont(Font.BOLD));
leftPanel.add(titleLabel, gbc);
ButtonGroup bg = new ButtonGroup();
bg.add(getAnchorAllButton());
bg.add(getAnchorOnlyButton());
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.insets = new Insets(4, 4, 4, 4);
gbc.fill = GridBagConstraints.HORIZONTAL;
leftPanel.add(getAnchorAllButton(), gbc);
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.insets = new Insets(4, 4, 4, 4);
gbc.fill = GridBagConstraints.HORIZONTAL;
leftPanel.add(getAnchorOnlyButton(), gbc);
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.weightx = 1.0;
gbc.weighty = 1.0;
gbc.insets = new Insets(4, 4, 4, 4);
gbc.fill = GridBagConstraints.BOTH;
leftPanel.add(anchorScrollPanel, gbc);
// ------------------------------------------------------------------------------
splitPaneHorizontal.setOneTouchExpandable(true);
splitPaneHorizontal.setDividerLocation(120);
splitPaneHorizontal.setResizeWeight(0.1);
Border border = BorderFactory.createLineBorder(Color.gray);
Border loweredEtchedBorder = BorderFactory.createEtchedBorder(EtchedBorder.LOWERED);
Border loweredBevelBorder = BorderFactory.createLoweredBevelBorder();
TitledBorder annotationBorder = BorderFactory.createTitledBorder(loweredEtchedBorder, " Annotation and Pathway Links ");
annotationBorder.setTitleJustification(TitledBorder.LEFT);
annotationBorder.setTitlePosition(TitledBorder.TOP);
annotationBorder.setTitleFont(getFont().deriveFont(Font.BOLD));
shapePanel = new LargeShapePanel() {
@Override
public void paintComponent(Graphics g) {
super.paintComponent(g);
for (LargeShape stls : molecularTypeShapeList) {
stls.paintSelf(g);
}
}
@Override
public DisplayMode getDisplayMode() {
return DisplayMode.other;
}
@Override
public RuleAnalysisChanged hasStateChanged(String reactionRuleName, MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasStateChanged(MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasBondChanged(String reactionRuleName, MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasBondChanged(MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasNoMatch(String reactionRuleName, MolecularTypePattern mtp) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasNoMatch(MolecularTypePattern molecularTypePattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public boolean isViewSingleRow() {
return true;
}
@Override
public RuleParticipantSignature getSignature() {
return null;
}
@Override
public GroupingCriteria getCriteria() {
return null;
}
};
shapePanel.setBorder(border);
shapePanel.setLayout(null);
shapePanel.setBackground(Color.white);
shapePanel.setEditable(true);
shapePanel.setShowMoleculeColor(true);
shapePanel.setShowNonTrivialOnly(true);
shapePanel.addMouseListener(new MouseAdapter() {
@Override
public void mouseClicked(MouseEvent e) {
super.mouseClicked(e);
stopEditing();
if (e.getButton() == 1) {
// left click selects the object (we highlight it)
Point whereClicked = e.getPoint();
PointLocationInShapeContext locationContext = new PointLocationInShapeContext(whereClicked);
manageMouseActivity(locationContext);
} else if (e.getButton() == 3) {
// right click invokes popup menu (only if the object is highlighted)
Point whereClicked = e.getPoint();
PointLocationInShapeContext locationContext = new PointLocationInShapeContext(whereClicked);
manageMouseActivity(locationContext);
if (locationContext.getDeepestShape() != null && !locationContext.getDeepestShape().isHighlighted()) {
// TODO: (maybe) add code here to highlight the shape if it's not highlighted already but don't show the menu
// return;
}
showPopupMenu(e, locationContext);
}
}
private void manageMouseActivity(PointLocationInShapeContext locationContext) {
Graphics g = shapePanel.getGraphics();
for (MolecularTypeLargeShape mtls : molecularTypeShapeList) {
mtls.turnHighlightOffRecursive(g);
}
for (MolecularTypeLargeShape mtls : molecularTypeShapeList) {
if (mtls.contains(locationContext)) {
// check if mouse is inside shape
break;
}
}
locationContext.highlightDeepestShape();
locationContext.paintDeepestShape(g);
}
});
shapePanel.addMouseMotionListener(new MouseMotionAdapter() {
public void mouseMoved(MouseEvent e) {
Point overWhat = e.getPoint();
PointLocationInShapeContext locationContext = new PointLocationInShapeContext(overWhat);
for (MolecularTypeLargeShape mtls : molecularTypeShapeList) {
if (mtls.contains(locationContext)) {
break;
}
}
HighlightableShapeInterface hsi = locationContext.getDeepestShape();
if (hsi == null) {
shapePanel.setToolTipText(null);
} else {
shapePanel.setToolTipText("Right click for " + hsi.getDisplayType() + " menus");
}
for (MolecularTypeLargeShape mtls : molecularTypeShapeList) {
Rectangle r = mtls.getAnchorHotspot();
if (r != null && r.contains(overWhat)) {
mtls.getMolecularType();
shapePanel.setToolTipText(mtls.getAnchorsHTML());
break;
}
}
}
});
// -------------------------------------------------------------------------------------------
// right bottom panel, contains just the annotation
JPanel generalPanel = new JPanel();
generalPanel.setBorder(annotationBorder);
generalPanel.setLayout(new GridBagLayout());
gridy = 0;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 0;
gbc.anchor = GridBagConstraints.LINE_START;
JLabel pathwayLink = new JLabel("Linked Pathway Object(s): ");
generalPanel.add(pathwayLink, gbc);
linkedPOScrollPane = new JScrollPane();
gbc = new java.awt.GridBagConstraints();
gbc.gridx = 1;
gbc.gridy = gridy;
gbc.weightx = 1.0;
gbc.gridwidth = GridBagConstraints.REMAINDER;
gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
gbc.insets = new Insets(4, 4, 4, 4);
generalPanel.add(linkedPOScrollPane, gbc);
gridy++;
// annotationTextArea = new javax.swing.JTextArea("", 1, 30);
// annotationTextArea.setLineWrap(true);
// annotationTextArea.setWrapStyleWord(true);
// annotationTextArea.setFont(new Font("monospaced", Font.PLAIN, 11));
annotationTextArea = new JTextPane();
annotationTextArea.setContentType("text/html");
annotationTextArea.setEditable(false);
javax.swing.JScrollPane jsp = new javax.swing.JScrollPane(annotationTextArea);
gbc = new java.awt.GridBagConstraints();
gbc.weightx = 1.0;
gbc.weighty = 1.0;
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.gridwidth = 2;
gbc.weightx = 1.0;
gbc.weighty = 1.0;
gbc.anchor = GridBagConstraints.LINE_START;
gbc.fill = java.awt.GridBagConstraints.BOTH;
gbc.insets = new Insets(4, 4, 4, 4);
generalPanel.add(jsp, gbc);
scrollPane = new JScrollPane(shapePanel);
scrollPane.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
scrollPane.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED);
splitPaneHorizontal.setTopComponent(scrollPane);
splitPaneHorizontal.setBottomComponent(generalPanel);
// -----------------------------------------------------------------------------
splitPane.setOneTouchExpandable(true);
splitPane.setLeftComponent(leftPanel);
splitPane.setRightComponent(splitPaneHorizontal);
splitPane.setResizeWeight(0.0);
splitPane.getLeftComponent().setMaximumSize(new Dimension(120, 200));
splitPane.getLeftComponent().setPreferredSize(new Dimension(120, 200));
// splitPane.setDividerLocation(0.0d); // completely hides the left component
// attempt to use the preferred size
splitPane.setDividerLocation(-1);
setName("MolecularTypePropertiesPanel");
setLayout(new BorderLayout());
add(splitPane, BorderLayout.CENTER);
setBackground(Color.white);
annotationTextArea.addFocusListener(eventHandler);
annotationTextArea.addMouseListener(eventHandler);
}
use of java.awt.Graphics in project vcell by virtualcell.
the class ObservablePropertiesPanel method manageComponentPatternFromShape.
public void manageComponentPatternFromShape(final RbmElementAbstract selectedObject, PointLocationInShapeContext locationContext, ShowWhat showWhat) {
final MolecularComponentPattern mcp = (MolecularComponentPattern) selectedObject;
final MolecularComponent mc = mcp.getMolecularComponent();
popupFromShapeMenu.removeAll();
// ------------------------------------------------------------------- State
if (showWhat == ShowWhat.ShowState && mc.getComponentStateDefinitions().size() != 0) {
String prefix = "State: ";
String csdCurrentName = "";
final Map<String, String> itemMap = new LinkedHashMap<String, String>();
if (mcp.getComponentStatePattern() == null || mcp.getComponentStatePattern().isAny()) {
csdCurrentName = "<html>" + prefix + "<b>" + ComponentStatePattern.strAny + "</b></html>";
} else {
csdCurrentName = "<html>" + prefix + ComponentStatePattern.strAny + "</html>";
}
itemMap.put(csdCurrentName, ComponentStatePattern.strAny);
for (final ComponentStateDefinition csd : mc.getComponentStateDefinitions()) {
csdCurrentName = "";
if (mcp.getComponentStatePattern() != null && !mcp.getComponentStatePattern().isAny()) {
ComponentStateDefinition csdCurrent = mcp.getComponentStatePattern().getComponentStateDefinition();
csdCurrentName = csdCurrent.getName();
}
String name = csd.getName();
if (name.equals(csdCurrentName)) {
// currently selected menu item is shown in bold
name = "<html>" + prefix + "<b>" + name + "</b></html>";
} else {
name = "<html>" + prefix + name + "</html>";
}
itemMap.put(name, csd.getName());
}
for (String name : itemMap.keySet()) {
JMenuItem menuItem = new JMenuItem(name);
popupFromShapeMenu.add(menuItem);
menuItem.setIcon(VCellIcons.rbmComponentStateIcon);
menuItem.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
String key = e.getActionCommand();
String name = itemMap.get(key);
if (name.equals(ComponentStatePattern.strAny)) {
ComponentStatePattern csp = new ComponentStatePattern();
mcp.setComponentStatePattern(csp);
} else {
ComponentStateDefinition csd = mcp.getMolecularComponent().getComponentStateDefinition(name);
if (csd == null) {
throw new RuntimeException("Missing ComponentStateDefinition " + name + " for Component " + mcp.getMolecularComponent().getName());
}
ComponentStatePattern csp = new ComponentStatePattern(csd);
mcp.setComponentStatePattern(csp);
}
}
});
}
}
if (showWhat == ShowWhat.ShowState) {
return;
}
// ------------------------------------------------------------------------------------------- Bonds
final MolecularTypePattern mtp = locationContext.getMolecularTypePattern();
final SpeciesPattern sp = locationContext.getSpeciesPattern();
JMenu editBondMenu = new JMenu();
final String specifiedString = mcp.getBondType() == BondType.Specified ? "<html><b>" + "Site bond specified" + "</b></html>" : "<html>" + "Site bond specified" + "</html>";
editBondMenu.setText(specifiedString);
editBondMenu.setToolTipText("Specified");
editBondMenu.removeAll();
final Map<String, Bond> itemMap = new LinkedHashMap<String, Bond>();
// String noneString = "<html>Bond: <b>" + BondType.None.symbol + "</b> " + BondType.None.name() + "</html>";
// String existsString = "<html>Bond: <b>" + BondType.Exists.symbol + "</b> " + BondType.Exists.name() + "</html>";
// String possibleString = "<html>Bond: <b>" + BondType.Possible.symbol + "</b> " + BondType.Possible.name() + "</html>";
String noneString = mcp.getBondType() == BondType.None ? "<html><b>" + "Site is unbound" + "</b></html>" : "<html>" + "Site is unbound" + "</html>";
// Site is bound
String existsString = mcp.getBondType() == BondType.Exists ? "<html><b>" + "Site has external bond" + "</b></html>" : "<html>" + "Site has external bond" + "</html>";
String possibleString = mcp.getBondType() == BondType.Possible ? "<html><b>" + "Site may be bound" + "</b></html>" : "<html>" + "Site may be bound" + "</html>";
itemMap.put(noneString, null);
itemMap.put(existsString, null);
itemMap.put(possibleString, null);
if (mtp != null && sp != null) {
List<Bond> bondPartnerChoices = sp.getAllBondPartnerChoices(mtp, mc);
for (Bond b : bondPartnerChoices) {
// if(b.equals(mcp.getBond())) {
// continue; // if the mcp has a bond already we don't offer it
// }
int index = 0;
if (mcp.getBondType() == BondType.Specified) {
index = mcp.getBondId();
} else {
index = sp.nextBondId();
}
// itemMap.put(b.toHtmlStringLong(mtp, mc, sp, index), b);
itemMap.put(b.toHtmlStringLong(sp, mtp, mc, index), b);
// itemMap.put(b.toHtmlStringLong(sp, index), b);
}
}
int index = 0;
Graphics gc = splitPaneHorizontal.getGraphics();
for (String name : itemMap.keySet()) {
JMenuItem menuItem = new JMenuItem(name);
if (index == 0) {
menuItem.setIcon(VCellIcons.rbmBondNoneIcon);
menuItem.setToolTipText("None");
popupFromShapeMenu.add(menuItem);
} else if (index == 1) {
menuItem.setIcon(VCellIcons.rbmBondExistsIcon);
menuItem.setToolTipText("Exists");
popupFromShapeMenu.add(menuItem);
} else if (index == 2) {
menuItem.setIcon(VCellIcons.rbmBondPossibleIcon);
menuItem.setToolTipText("Possible");
popupFromShapeMenu.add(menuItem);
} else if (index > 2) {
Bond b = itemMap.get(name);
// clone of the sp, with only the bond of interest
SpeciesPattern spBond = new SpeciesPattern(bioModel.getModel(), sp);
spBond.resetBonds();
spBond.resetStates();
MolecularTypePattern mtpFrom = spBond.getMolecularTypePattern(mtp.getMolecularType().getName(), mtp.getIndex());
MolecularComponentPattern mcpFrom = mtpFrom.getMolecularComponentPattern(mc);
MolecularTypePattern mtpTo = spBond.getMolecularTypePattern(b.molecularTypePattern.getMolecularType().getName(), b.molecularTypePattern.getIndex());
MolecularComponentPattern mcpTo = mtpTo.getMolecularComponentPattern(b.molecularComponentPattern.getMolecularComponent());
spBond.setBond(mtpTo, mcpTo, mtpFrom, mcpFrom);
Icon icon = new SpeciesPatternSmallShape(3, 4, spBond, gc, observable, false, issueManager);
((SpeciesPatternSmallShape) icon).setDisplayRequirements(DisplayRequirements.highlightBonds);
menuItem.setIcon(icon);
editBondMenu.add(menuItem);
// } else {
// if(index == 0) {
// menuItem.setForeground(Color.blue);
// }
// popupFromShapeMenu.add(menuItem);
}
menuItem.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
String name = e.getActionCommand();
BondType btBefore = mcp.getBondType();
if (name.equals(noneString)) {
if (btBefore == BondType.Specified) {
// specified -> not specified
// change the partner to possible
mcp.getBond().molecularComponentPattern.setBondType(BondType.Possible);
mcp.getBond().molecularComponentPattern.setBond(null);
}
mcp.setBondType(BondType.None);
mcp.setBond(null);
SwingUtilities.invokeLater(new Runnable() {
public void run() {
observableTreeModel.populateTree();
}
});
} else if (name.equals(existsString)) {
if (btBefore == BondType.Specified) {
// specified -> exists
// change the partner to possible
mcp.getBond().molecularComponentPattern.setBondType(BondType.Possible);
mcp.getBond().molecularComponentPattern.setBond(null);
}
mcp.setBondType(BondType.Exists);
mcp.setBond(null);
SwingUtilities.invokeLater(new Runnable() {
public void run() {
observableTreeModel.populateTree();
}
});
} else if (name.equals(possibleString)) {
if (btBefore == BondType.Specified) {
// specified -> possible
// change the partner to possible
mcp.getBond().molecularComponentPattern.setBondType(BondType.Possible);
mcp.getBond().molecularComponentPattern.setBond(null);
}
mcp.setBondType(BondType.Possible);
mcp.setBond(null);
SwingUtilities.invokeLater(new Runnable() {
public void run() {
observableTreeModel.populateTree();
}
});
} else {
if (btBefore != BondType.Specified) {
// if we go from a non-specified to a specified we need to find the next available
// bond id, so that we can choose the color for displaying the bond
// a bad bond id, like -1, will crash badly when trying to choose the color
int bondId = sp.nextBondId();
mcp.setBondId(bondId);
} else {
// specified -> specified
// change the old partner to possible, continue using the bond id
mcp.getBond().molecularComponentPattern.setBondType(BondType.Possible);
mcp.getBond().molecularComponentPattern.setBond(null);
}
mcp.setBondType(BondType.Specified);
Bond b = itemMap.get(name);
mcp.setBond(b);
mcp.getBond().molecularComponentPattern.setBondId(mcp.getBondId());
sp.resolveBonds();
SwingUtilities.invokeLater(new Runnable() {
public void run() {
observableTreeModel.populateTree();
}
});
}
}
});
index++;
}
popupFromShapeMenu.add(editBondMenu);
}
use of java.awt.Graphics in project vcell by virtualcell.
the class ObservablePropertiesPanel method initialize.
private void initialize() {
observableTree = new BioModelNodeEditableTree();
observableTreeModel = new ObservableTreeModel(observableTree);
observableTree.setModel(observableTreeModel);
setLayout(new GridBagLayout());
// --------------------------------------------------------------------------------------------------------
splitPaneHorizontal.setOneTouchExpandable(true);
splitPaneHorizontal.setDividerLocation(120);
splitPaneHorizontal.setResizeWeight(0.1);
Border border = BorderFactory.createLineBorder(Color.gray);
Border loweredEtchedBorder = BorderFactory.createEtchedBorder(EtchedBorder.LOWERED);
Border loweredBevelBorder = BorderFactory.createLoweredBevelBorder();
TitledBorder annotationBorder = BorderFactory.createTitledBorder(loweredEtchedBorder, " Annotation ");
annotationBorder.setTitleJustification(TitledBorder.LEFT);
annotationBorder.setTitlePosition(TitledBorder.TOP);
annotationBorder.setTitleFont(getFont().deriveFont(Font.BOLD));
shapePanel = new LargeShapePanel() {
@Override
public void paintComponent(Graphics g) {
super.paintComponent(g);
for (SpeciesPatternLargeShape sps : spsList) {
if (sps == null) {
continue;
}
sps.paintSelf(g);
}
}
@Override
public DisplayMode getDisplayMode() {
return DisplayMode.other;
}
@Override
public RuleAnalysisChanged hasStateChanged(String reactionRuleName, MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasStateChanged(MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasBondChanged(String reactionRuleName, MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasBondChanged(MolecularComponentPattern molecularComponentPattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasNoMatch(String reactionRuleName, MolecularTypePattern mtp) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleAnalysisChanged hasNoMatch(MolecularTypePattern molecularTypePattern) {
return RuleAnalysisChanged.UNCHANGED;
}
@Override
public RuleParticipantSignature getSignature() {
return null;
}
@Override
public GroupingCriteria getCriteria() {
return null;
}
@Override
public boolean isViewSingleRow() {
return true;
}
};
shapePanel.setBorder(border);
shapePanel.setBackground(Color.white);
shapePanel.setLayout(null);
shapePanel.setZoomFactor(-1);
shapePanel.setEditable(true);
shapePanel.setShowMoleculeColor(true);
shapePanel.setShowNonTrivialOnly(true);
shapePanel.addMouseListener(new MouseAdapter() {
@Override
public void mouseClicked(MouseEvent e) {
super.mouseClicked(e);
if (e.getButton() == 1) {
// left click selects the object (we highlight it)
Point whereClicked = e.getPoint();
PointLocationInShapeContext locationContext = new PointLocationInShapeContext(whereClicked);
manageMouseActivity(locationContext);
} else if (e.getButton() == 3) {
// right click invokes popup menu (only if the object is highlighted)
Point whereClicked = e.getPoint();
PointLocationInShapeContext locationContext = new PointLocationInShapeContext(whereClicked);
manageMouseActivity(locationContext);
if (locationContext.getDeepestShape() != null && !locationContext.getDeepestShape().isHighlighted()) {
// TODO: (maybe) add code here to highlight the shape if it's not highlighted already but don't show the menu
// return;
}
showPopupMenu(e, locationContext);
}
}
private void manageMouseActivity(PointLocationInShapeContext locationContext) {
Graphics g = shapePanel.getGraphics();
for (SpeciesPatternLargeShape sps : spsList) {
sps.turnHighlightOffRecursive(g);
}
for (SpeciesPatternLargeShape sps : spsList) {
if (sps.contains(locationContext)) {
// check if mouse is inside shape
break;
}
}
locationContext.highlightDeepestShape();
locationContext.paintDeepestShape(g);
}
});
// shapePanel.addMouseListener(eventHandler); // alternately use this
shapePanel.addMouseMotionListener(new MouseMotionAdapter() {
public void mouseMoved(MouseEvent e) {
Point overWhat = e.getPoint();
PointLocationInShapeContext locationContext = new PointLocationInShapeContext(overWhat);
for (SpeciesPatternLargeShape sps : spsList) {
if (sps.contains(locationContext)) {
break;
}
}
HighlightableShapeInterface hsi = locationContext.getDeepestShape();
if (hsi == null) {
shapePanel.setToolTipText(null);
} else {
shapePanel.setToolTipText("Right click for " + hsi.getDisplayType() + " menus");
}
for (SpeciesPatternLargeShape sps : spsList) {
for (MolecularTypeLargeShape mtls : sps.getMolecularTypeLargeShapes()) {
Rectangle r = mtls.getAnchorHotspot();
if (r != null && r.contains(overWhat)) {
mtls.getMolecularType();
shapePanel.setToolTipText(mtls.getAnchorsHTML());
break;
}
}
}
}
});
JPanel optionsPanel = new JPanel();
// gray options panel
optionsPanel.setPreferredSize(new Dimension(140, 200));
optionsPanel.setLayout(new GridBagLayout());
getZoomSmallerButton().setEnabled(true);
getZoomLargerButton().setEnabled(true);
int gridy = 0;
GridBagConstraints gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.gridwidth = 3;
// top, left bottom, right
gbc.insets = new Insets(4, 4, 2, 4);
gbc.fill = GridBagConstraints.HORIZONTAL;
gbc.anchor = GridBagConstraints.NORTHWEST;
optionsPanel.add(getAddSpeciesButton(), gbc);
ButtonGroup bg = new ButtonGroup();
bg.add(getSequenceMultimolecularButton());
bg.add(getSequencePolimerEqualButton());
bg.add(getSequencePolimerGreaterButton());
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.gridwidth = 2;
gbc.insets = new Insets(8, 4, 2, 4);
gbc.fill = GridBagConstraints.HORIZONTAL;
optionsPanel.add(getSequenceMultimolecularButton(), gbc);
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.insets = new Insets(4, 10, 2, 4);
gbc.fill = GridBagConstraints.HORIZONTAL;
JLabel label = new JLabel("Polymer of");
label.setToolTipText("Compact notation available below for single-Molecule polymers");
optionsPanel.add(label, gbc);
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.insets = new Insets(2, 4, 1, 2);
gbc.fill = GridBagConstraints.HORIZONTAL;
optionsPanel.add(getSequencePolimerEqualButton(), gbc);
gbc = new GridBagConstraints();
gbc.gridx = 1;
gbc.gridy = gridy;
gbc.gridwidth = 2;
gbc.insets = new Insets(2, 4, 1, 4);
gbc.fill = GridBagConstraints.HORIZONTAL;
optionsPanel.add(getLengthEqualTextField(), gbc);
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.insets = new Insets(1, 4, 4, 2);
gbc.fill = GridBagConstraints.HORIZONTAL;
optionsPanel.add(getSequencePolimerGreaterButton(), gbc);
gbc = new GridBagConstraints();
gbc.gridx = 1;
gbc.gridy = gridy;
gbc.gridwidth = 2;
gbc.insets = new Insets(1, 4, 4, 4);
gbc.fill = GridBagConstraints.HORIZONTAL;
optionsPanel.add(getLengthGreaterTextField(), gbc);
// --- zoom buttons in their own panel, for alignment ---
JPanel buttonPanel = new JPanel();
buttonPanel.setLayout(new GridBagLayout());
GridBagConstraints gbc2 = new GridBagConstraints();
gbc2.gridx = 0;
gbc2.gridy = 0;
gbc2.insets = new Insets(1, 1, 1, 1);
gbc2.anchor = GridBagConstraints.WEST;
buttonPanel.add(getZoomLargerButton(), gbc2);
gbc2 = new GridBagConstraints();
gbc2.gridx = 1;
gbc2.gridy = 0;
gbc2.insets = new Insets(1, 1, 1, 1);
gbc2.anchor = GridBagConstraints.WEST;
buttonPanel.add(getZoomSmallerButton(), gbc2);
// ---------------------------------------------------
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.anchor = GridBagConstraints.WEST;
gbc.insets = new Insets(1, 4, 4, 2);
gbc.fill = GridBagConstraints.HORIZONTAL;
// zoom buttons panel
optionsPanel.add(buttonPanel, gbc);
gridy++;
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.gridwidth = 3;
gbc.weightx = 1;
// fake cell used for filling all the vertical empty space
gbc.weighty = 1;
gbc.anchor = GridBagConstraints.WEST;
gbc.insets = new Insets(2, 1, 2, 10);
optionsPanel.add(new JLabel(""), gbc);
// -----------------------------------------------------------------------------------------
// right bottom panel, contains just the annotation
JPanel generalPanel = new JPanel();
generalPanel.setBorder(annotationBorder);
generalPanel.setLayout(new GridBagLayout());
gridy = 0;
annotationTextArea = new javax.swing.JTextArea("", 1, 30);
annotationTextArea.setLineWrap(true);
annotationTextArea.setWrapStyleWord(true);
annotationTextArea.setFont(new Font("monospaced", Font.PLAIN, 11));
annotationTextArea.setEditable(false);
javax.swing.JScrollPane jsp = new javax.swing.JScrollPane(annotationTextArea);
gbc = new java.awt.GridBagConstraints();
gbc.weightx = 1.0;
gbc.weighty = 0.1;
gbc.gridx = 0;
gbc.gridy = gridy;
gbc.anchor = GridBagConstraints.LINE_START;
gbc.fill = java.awt.GridBagConstraints.BOTH;
gbc.insets = new Insets(4, 4, 4, 4);
generalPanel.add(jsp, gbc);
// where we display the shapes
scrollPane = new JScrollPane(shapePanel);
scrollPane.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
scrollPane.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED);
JPanel containerOfScrollPanel = new JPanel();
containerOfScrollPanel.setLayout(new BorderLayout());
containerOfScrollPanel.add(optionsPanel, BorderLayout.WEST);
containerOfScrollPanel.add(scrollPane, BorderLayout.CENTER);
splitPaneHorizontal.setTopComponent(containerOfScrollPanel);
splitPaneHorizontal.setBottomComponent(generalPanel);
splitPaneHorizontal.setResizeWeight(0.9d);
splitPaneHorizontal.setDividerLocation(0.8d);
setName("ObservablePropertiesPanel");
setLayout(new BorderLayout());
add(splitPaneHorizontal, BorderLayout.CENTER);
setBackground(Color.white);
annotationTextArea.addFocusListener(eventHandler);
annotationTextArea.addMouseListener(eventHandler);
}
use of java.awt.Graphics in project vcell by virtualcell.
the class BrowseImage method createGifFromImage.
private static byte[] createGifFromImage(Image image) throws IOException {
image = new ImageIcon(image).getImage();
BufferedImage bi = new BufferedImage(image.getWidth(null), image.getHeight(null), BufferedImage.TYPE_INT_RGB);
Graphics g = bi.createGraphics();
g.drawImage(image, 0, 0, null);
g.dispose();
ByteArrayOutputStream bos = new ByteArrayOutputStream();
ImageIO.write(bi, "gif", bos);
return bos.toByteArray();
}
use of java.awt.Graphics in project vcell by virtualcell.
the class MolecularComponentLargeShape method getStringHeight.
private int getStringHeight(Font font) {
Graphics gc = shapePanel.getGraphics();
FontMetrics fm = gc.getFontMetrics(font);
int stringHeight = fm.getHeight();
return stringHeight;
}
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