Examples with AtomicInteger java.util.concurrent.atomic.AtomicInteger used on opensource projects

Example 21 with AtomicInteger

use of java.util.concurrent.atomic.AtomicInteger in project deeplearning4j by deeplearning4j.

the class WordVectorSerializer method readWord2VecModel.

/**
     * This method
     * 1) Binary model, either compressed or not. Like well-known Google Model
     * 2) Popular CSV word2vec text format
     * 3) DL4j compressed format
     *
     * Please note: if extended data isn't available, only weights will be loaded instead.
     *
     * @param file
     * @param extendedModel if TRUE, we'll try to load HS states & Huffman tree info, if FALSE, only weights will be loaded
     * @return
     */
public static Word2Vec readWord2VecModel(@NonNull File file, boolean extendedModel) {
    InMemoryLookupTable<VocabWord> lookupTable = new InMemoryLookupTable<>();
    AbstractCache<VocabWord> vocabCache = new AbstractCache<>();
    Word2Vec vec;
    INDArray syn0 = null;
    VectorsConfiguration configuration = new VectorsConfiguration();
    if (!file.exists() || !file.isFile())
        throw new ND4JIllegalStateException("File [" + file.getAbsolutePath() + "] doesn't exist");
    int originalFreq = Nd4j.getMemoryManager().getOccasionalGcFrequency();
    boolean originalPeriodic = Nd4j.getMemoryManager().isPeriodicGcActive();
    if (originalPeriodic)
        Nd4j.getMemoryManager().togglePeriodicGc(false);
    Nd4j.getMemoryManager().setOccasionalGcFrequency(50000);
    // try to load zip format
    try {
        if (extendedModel) {
            log.debug("Trying full model restoration...");
            if (originalPeriodic)
                Nd4j.getMemoryManager().togglePeriodicGc(true);
            Nd4j.getMemoryManager().setOccasionalGcFrequency(originalFreq);
            return readWord2Vec(file);
        } else {
            log.debug("Trying simplified model restoration...");
            File tmpFileSyn0 = File.createTempFile("word2vec", "syn");
            File tmpFileConfig = File.createTempFile("word2vec", "config");
            // we don't need full model, so we go directly to syn0 file
            ZipFile zipFile = new ZipFile(file);
            ZipEntry syn = zipFile.getEntry("syn0.txt");
            InputStream stream = zipFile.getInputStream(syn);
            Files.copy(stream, Paths.get(tmpFileSyn0.getAbsolutePath()), StandardCopyOption.REPLACE_EXISTING);
            // now we're restoring configuration saved earlier
            ZipEntry config = zipFile.getEntry("config.json");
            if (config != null) {
                stream = zipFile.getInputStream(config);
                StringBuilder builder = new StringBuilder();
                try (BufferedReader reader = new BufferedReader(new InputStreamReader(stream))) {
                    String line;
                    while ((line = reader.readLine()) != null) {
                        builder.append(line);
                    }
                }
                configuration = VectorsConfiguration.fromJson(builder.toString().trim());
            }
            ZipEntry ve = zipFile.getEntry("frequencies.txt");
            if (ve != null) {
                stream = zipFile.getInputStream(ve);
                AtomicInteger cnt = new AtomicInteger(0);
                try (BufferedReader reader = new BufferedReader(new InputStreamReader(stream))) {
                    String line;
                    while ((line = reader.readLine()) != null) {
                        String[] split = line.split(" ");
                        VocabWord word = new VocabWord(Double.valueOf(split[1]), decodeB64(split[0]));
                        word.setIndex(cnt.getAndIncrement());
                        word.incrementSequencesCount(Long.valueOf(split[2]));
                        vocabCache.addToken(word);
                        vocabCache.addWordToIndex(word.getIndex(), word.getLabel());
                        Nd4j.getMemoryManager().invokeGcOccasionally();
                    }
                }
            }
            List<INDArray> rows = new ArrayList<>();
            // basically read up everything, call vstacl and then return model
            try (Reader reader = new CSVReader(tmpFileSyn0)) {
                AtomicInteger cnt = new AtomicInteger(0);
                while (reader.hasNext()) {
                    Pair<VocabWord, float[]> pair = reader.next();
                    VocabWord word = pair.getFirst();
                    INDArray vector = Nd4j.create(pair.getSecond());
                    if (ve != null) {
                        if (syn0 == null)
                            syn0 = Nd4j.create(vocabCache.numWords(), vector.length());
                        syn0.getRow(cnt.getAndIncrement()).assign(vector);
                    } else {
                        rows.add(vector);
                        vocabCache.addToken(word);
                        vocabCache.addWordToIndex(word.getIndex(), word.getLabel());
                    }
                    Nd4j.getMemoryManager().invokeGcOccasionally();
                }
            } catch (Exception e) {
                throw new RuntimeException(e);
            } finally {
                if (originalPeriodic)
                    Nd4j.getMemoryManager().togglePeriodicGc(true);
                Nd4j.getMemoryManager().setOccasionalGcFrequency(originalFreq);
            }
            if (syn0 == null && vocabCache.numWords() > 0)
                syn0 = Nd4j.vstack(rows);
            if (syn0 == null) {
                log.error("Can't build syn0 table");
                throw new DL4JInvalidInputException("Can't build syn0 table");
            }
            lookupTable = new InMemoryLookupTable.Builder<VocabWord>().cache(vocabCache).vectorLength(syn0.columns()).useHierarchicSoftmax(false).useAdaGrad(false).build();
            lookupTable.setSyn0(syn0);
            try {
                tmpFileSyn0.delete();
                tmpFileConfig.delete();
            } catch (Exception e) {
            //
            }
        }
    } catch (Exception e) {
        // let's try to load this file as csv file
        try {
            log.debug("Trying CSV model restoration...");
            Pair<InMemoryLookupTable, VocabCache> pair = loadTxt(file);
            lookupTable = pair.getFirst();
            vocabCache = (AbstractCache<VocabWord>) pair.getSecond();
        } catch (Exception ex) {
            // we fallback to trying binary model instead
            try {
                log.debug("Trying binary model restoration...");
                if (originalPeriodic)
                    Nd4j.getMemoryManager().togglePeriodicGc(true);
                Nd4j.getMemoryManager().setOccasionalGcFrequency(originalFreq);
                vec = loadGoogleModel(file, true, true);
                return vec;
            } catch (Exception ey) {
                // try to load without linebreaks
                try {
                    if (originalPeriodic)
                        Nd4j.getMemoryManager().togglePeriodicGc(true);
                    Nd4j.getMemoryManager().setOccasionalGcFrequency(originalFreq);
                    vec = loadGoogleModel(file, true, false);
                    return vec;
                } catch (Exception ez) {
                    throw new RuntimeException("Unable to guess input file format. Please use corresponding loader directly");
                }
            }
        }
    }
    Word2Vec.Builder builder = new Word2Vec.Builder(configuration).lookupTable(lookupTable).useAdaGrad(false).vocabCache(vocabCache).layerSize(lookupTable.layerSize()).useHierarchicSoftmax(false).resetModel(false);
    /*
            Trying to restore TokenizerFactory & TokenPreProcessor
         */
    TokenizerFactory factory = getTokenizerFactory(configuration);
    if (factory != null)
        builder.tokenizerFactory(factory);
    vec = builder.build();
    return vec;
}

Example 22 with AtomicInteger

use of java.util.concurrent.atomic.AtomicInteger in project elasticsearch by elastic.

the class VerifyNodeRepositoryAction method verify.

public void verify(String repository, String verificationToken, final ActionListener<VerifyResponse> listener) {
    final DiscoveryNodes discoNodes = clusterService.state().nodes();
    final DiscoveryNode localNode = discoNodes.getLocalNode();
    final ObjectContainer<DiscoveryNode> masterAndDataNodes = discoNodes.getMasterAndDataNodes().values();
    final List<DiscoveryNode> nodes = new ArrayList<>();
    for (ObjectCursor<DiscoveryNode> cursor : masterAndDataNodes) {
        DiscoveryNode node = cursor.value;
        nodes.add(node);
    }
    final CopyOnWriteArrayList<VerificationFailure> errors = new CopyOnWriteArrayList<>();
    final AtomicInteger counter = new AtomicInteger(nodes.size());
    for (final DiscoveryNode node : nodes) {
        if (node.equals(localNode)) {
            try {
                doVerify(repository, verificationToken, localNode);
            } catch (Exception e) {
                logger.warn((Supplier<?>) () -> new ParameterizedMessage("[{}] failed to verify repository", repository), e);
                errors.add(new VerificationFailure(node.getId(), e));
            }
            if (counter.decrementAndGet() == 0) {
                finishVerification(listener, nodes, errors);
            }
        } else {
            transportService.sendRequest(node, ACTION_NAME, new VerifyNodeRepositoryRequest(repository, verificationToken), new EmptyTransportResponseHandler(ThreadPool.Names.SAME) {

                @Override
                public void handleResponse(TransportResponse.Empty response) {
                    if (counter.decrementAndGet() == 0) {
                        finishVerification(listener, nodes, errors);
                    }
                }

                @Override
                public void handleException(TransportException exp) {
                    errors.add(new VerificationFailure(node.getId(), exp));
                    if (counter.decrementAndGet() == 0) {
                        finishVerification(listener, nodes, errors);
                    }
                }
            });
        }
    }
}

Example 23 with AtomicInteger

use of java.util.concurrent.atomic.AtomicInteger in project elasticsearch by elastic.

the class CreateIndexIT method testCreateAndDeleteIndexConcurrently.

public void testCreateAndDeleteIndexConcurrently() throws InterruptedException {
    createIndex("test");
    final AtomicInteger indexVersion = new AtomicInteger(0);
    final Object indexVersionLock = new Object();
    final CountDownLatch latch = new CountDownLatch(1);
    int numDocs = randomIntBetween(1, 10);
    for (int i = 0; i < numDocs; i++) {
        client().prepareIndex("test", "test").setSource("index_version", indexVersion.get()).get();
    }
    synchronized (indexVersionLock) {
        // not necessarily needed here but for completeness we lock here too
        indexVersion.incrementAndGet();
    }
    client().admin().indices().prepareDelete("test").execute(new // this happens async!!!
    ActionListener<DeleteIndexResponse>() {

        @Override
        public void onResponse(DeleteIndexResponse deleteIndexResponse) {
            Thread thread = new Thread() {

                @Override
                public void run() {
                    try {
                        // recreate that index
                        client().prepareIndex("test", "test").setSource("index_version", indexVersion.get()).get();
                        synchronized (indexVersionLock) {
                            // we sync here since we have to ensure that all indexing operations below for a given ID are done before
                            // we increment the index version otherwise a doc that is in-flight could make it into an index that it
                            // was supposed to be deleted for and our assertion fail...
                            indexVersion.incrementAndGet();
                        }
                        // from here on all docs with index_version == 0|1 must be gone!!!! only 2 are ok;
                        assertAcked(client().admin().indices().prepareDelete("test").get());
                    } finally {
                        latch.countDown();
                    }
                }
            };
            thread.start();
        }

        @Override
        public void onFailure(Exception e) {
            throw new RuntimeException(e);
        }
    });
    numDocs = randomIntBetween(100, 200);
    for (int i = 0; i < numDocs; i++) {
        try {
            synchronized (indexVersionLock) {
                client().prepareIndex("test", "test").setSource("index_version", indexVersion.get()).setTimeout(TimeValue.timeValueSeconds(10)).get();
            }
        } catch (IndexNotFoundException inf) {
        // fine
        } catch (UnavailableShardsException ex) {
            assertEquals(ex.getCause().getClass(), IndexNotFoundException.class);
        // fine we run into a delete index while retrying
        }
    }
    latch.await();
    refresh();
    // we only really assert that we never reuse segments of old indices or anything like this here and that nothing fails with
    // crazy exceptions
    SearchResponse expected = client().prepareSearch("test").setIndicesOptions(IndicesOptions.lenientExpandOpen()).setQuery(new RangeQueryBuilder("index_version").from(indexVersion.get(), true)).get();
    SearchResponse all = client().prepareSearch("test").setIndicesOptions(IndicesOptions.lenientExpandOpen()).get();
    assertEquals(expected + " vs. " + all, expected.getHits().getTotalHits(), all.getHits().getTotalHits());
    logger.info("total: {}", expected.getHits().getTotalHits());
}

Example 24 with AtomicInteger

use of java.util.concurrent.atomic.AtomicInteger in project elasticsearch by elastic.

the class TransportActionFilterChainTests method testTooManyContinueProcessingRequest.

public void testTooManyContinueProcessingRequest() throws ExecutionException, InterruptedException {
    final int additionalContinueCount = randomInt(10);
    RequestTestFilter testFilter = new RequestTestFilter(randomInt(), new RequestCallback() {

        @Override
        public <Request extends ActionRequest, Response extends ActionResponse> void execute(Task task, String action, Request request, ActionListener<Response> listener, ActionFilterChain<Request, Response> actionFilterChain) {
            for (int i = 0; i <= additionalContinueCount; i++) {
                actionFilterChain.proceed(task, action, request, listener);
            }
        }
    });
    Set<ActionFilter> filters = new HashSet<>();
    filters.add(testFilter);
    String actionName = randomAsciiOfLength(randomInt(30));
    ActionFilters actionFilters = new ActionFilters(filters);
    TransportAction<TestRequest, TestResponse> transportAction = new TransportAction<TestRequest, TestResponse>(Settings.EMPTY, actionName, null, actionFilters, null, new TaskManager(Settings.EMPTY)) {

        @Override
        protected void doExecute(TestRequest request, ActionListener<TestResponse> listener) {
            listener.onResponse(new TestResponse());
        }
    };
    final CountDownLatch latch = new CountDownLatch(additionalContinueCount + 1);
    final AtomicInteger responses = new AtomicInteger();
    final List<Throwable> failures = new CopyOnWriteArrayList<>();
    transportAction.execute(new TestRequest(), new ActionListener<TestResponse>() {

        @Override
        public void onResponse(TestResponse testResponse) {
            responses.incrementAndGet();
            latch.countDown();
        }

        @Override
        public void onFailure(Exception e) {
            failures.add(e);
            latch.countDown();
        }
    });
    if (!latch.await(10, TimeUnit.SECONDS)) {
        fail("timeout waiting for the filter to notify the listener as many times as expected");
    }
    assertThat(testFilter.runs.get(), equalTo(1));
    assertThat(testFilter.lastActionName, equalTo(actionName));
    assertThat(responses.get(), equalTo(1));
    assertThat(failures.size(), equalTo(additionalContinueCount));
    for (Throwable failure : failures) {
        assertThat(failure, instanceOf(IllegalStateException.class));
    }
}

Example 25 with AtomicInteger

use of java.util.concurrent.atomic.AtomicInteger in project elasticsearch by elastic.

the class IndexRecoveryIT method testDisconnectsDuringRecovery.

/**
     * Tests scenario where recovery target successfully sends recovery request to source but then the channel gets closed while
     * the source is working on the recovery process.
     */
@TestLogging("_root:DEBUG,org.elasticsearch.indices.recovery:TRACE")
public void testDisconnectsDuringRecovery() throws Exception {
    boolean primaryRelocation = randomBoolean();
    final String indexName = "test";
    final Settings nodeSettings = Settings.builder().put(RecoverySettings.INDICES_RECOVERY_RETRY_DELAY_NETWORK_SETTING.getKey(), TimeValue.timeValueMillis(randomIntBetween(0, 100))).build();
    TimeValue disconnectAfterDelay = TimeValue.timeValueMillis(randomIntBetween(0, 100));
    // start a master node
    String masterNodeName = internalCluster().startMasterOnlyNode(nodeSettings);
    final String blueNodeName = internalCluster().startNode(Settings.builder().put("node.attr.color", "blue").put(nodeSettings).build());
    final String redNodeName = internalCluster().startNode(Settings.builder().put("node.attr.color", "red").put(nodeSettings).build());
    client().admin().indices().prepareCreate(indexName).setSettings(Settings.builder().put(IndexMetaData.INDEX_ROUTING_INCLUDE_GROUP_SETTING.getKey() + "color", "blue").put(IndexMetaData.SETTING_NUMBER_OF_SHARDS, 1).put(IndexMetaData.SETTING_NUMBER_OF_REPLICAS, 0)).get();
    List<IndexRequestBuilder> requests = new ArrayList<>();
    int numDocs = scaledRandomIntBetween(25, 250);
    for (int i = 0; i < numDocs; i++) {
        requests.add(client().prepareIndex(indexName, "type").setSource("{}", XContentType.JSON));
    }
    indexRandom(true, requests);
    ensureSearchable(indexName);
    assertHitCount(client().prepareSearch(indexName).get(), numDocs);
    MockTransportService masterTransportService = (MockTransportService) internalCluster().getInstance(TransportService.class, masterNodeName);
    MockTransportService blueMockTransportService = (MockTransportService) internalCluster().getInstance(TransportService.class, blueNodeName);
    MockTransportService redMockTransportService = (MockTransportService) internalCluster().getInstance(TransportService.class, redNodeName);
    redMockTransportService.addDelegate(blueMockTransportService, new MockTransportService.DelegateTransport(redMockTransportService.original()) {

        private final AtomicInteger count = new AtomicInteger();

        @Override
        protected void sendRequest(Connection connection, long requestId, String action, TransportRequest request, TransportRequestOptions options) throws IOException {
            logger.info("--> sending request {} on {}", action, connection.getNode());
            if (PeerRecoverySourceService.Actions.START_RECOVERY.equals(action) && count.incrementAndGet() == 1) {
                // ensures that it's considered as valid recovery attempt by source
                try {
                    awaitBusy(() -> client(blueNodeName).admin().cluster().prepareState().setLocal(true).get().getState().getRoutingTable().index("test").shard(0).getAllInitializingShards().isEmpty() == false);
                } catch (InterruptedException e) {
                    throw new RuntimeException(e);
                }
                super.sendRequest(connection, requestId, action, request, options);
                try {
                    Thread.sleep(disconnectAfterDelay.millis());
                } catch (InterruptedException e) {
                    throw new RuntimeException(e);
                }
                throw new ConnectTransportException(connection.getNode(), "DISCONNECT: simulation disconnect after successfully sending " + action + " request");
            } else {
                super.sendRequest(connection, requestId, action, request, options);
            }
        }
    });
    final AtomicBoolean finalized = new AtomicBoolean();
    blueMockTransportService.addDelegate(redMockTransportService, new MockTransportService.DelegateTransport(blueMockTransportService.original()) {

        @Override
        protected void sendRequest(Connection connection, long requestId, String action, TransportRequest request, TransportRequestOptions options) throws IOException {
            logger.info("--> sending request {} on {}", action, connection.getNode());
            if (action.equals(PeerRecoveryTargetService.Actions.FINALIZE)) {
                finalized.set(true);
            }
            super.sendRequest(connection, requestId, action, request, options);
        }
    });
    for (MockTransportService mockTransportService : Arrays.asList(redMockTransportService, blueMockTransportService)) {
        mockTransportService.addDelegate(masterTransportService, new MockTransportService.DelegateTransport(mockTransportService.original()) {

            @Override
            protected void sendRequest(Connection connection, long requestId, String action, TransportRequest request, TransportRequestOptions options) throws IOException {
                logger.info("--> sending request {} on {}", action, connection.getNode());
                if ((primaryRelocation && finalized.get()) == false) {
                    assertNotEquals(action, ShardStateAction.SHARD_FAILED_ACTION_NAME);
                }
                super.sendRequest(connection, requestId, action, request, options);
            }
        });
    }
    if (primaryRelocation) {
        logger.info("--> starting primary relocation recovery from blue to red");
        client().admin().indices().prepareUpdateSettings(indexName).setSettings(Settings.builder().put(IndexMetaData.INDEX_ROUTING_INCLUDE_GROUP_SETTING.getKey() + "color", "red")).get();
        // also waits for relocation / recovery to complete
        ensureGreen();
        // if a primary relocation fails after the source shard has been marked as relocated, both source and target are failed. If the
        // source shard is moved back to started because the target fails first, it's possible that there is a cluster state where the
        // shard is marked as started again (and ensureGreen returns), but while applying the cluster state the primary is failed and
        // will be reallocated. The cluster will thus become green, then red, then green again. Triggering a refresh here before
        // searching helps, as in contrast to search actions, refresh waits for the closed shard to be reallocated.
        client().admin().indices().prepareRefresh(indexName).get();
    } else {
        logger.info("--> starting replica recovery from blue to red");
        client().admin().indices().prepareUpdateSettings(indexName).setSettings(Settings.builder().put(IndexMetaData.INDEX_ROUTING_INCLUDE_GROUP_SETTING.getKey() + "color", "red,blue").put(IndexMetaData.SETTING_NUMBER_OF_REPLICAS, 1)).get();
        ensureGreen();
    }
    for (int i = 0; i < 10; i++) {
        assertHitCount(client().prepareSearch(indexName).get(), numDocs);
    }
}