Examples with InflaterInputStream java.util.zip.InflaterInputStream used on opensource projects

Example 91 with InflaterInputStream

use of java.util.zip.InflaterInputStream in project pravega by pravega.

the class TagRecord method decompressArrayOption.

private static Collection<String> decompressArrayOption(final byte[] compressed) throws IOException {
    InputStream in = new InflaterInputStream(new ByteArrayInputStream(compressed));
    @Cleanup DataInputStream din = new DataInputStream(in);
    List<String> tags = new ArrayList<>();
    while (true) {
        try {
            tags.add(din.readUTF());
        } catch (EOFException e) {
            break;
        }
    }
    return tags;
}

Example 92 with InflaterInputStream

use of java.util.zip.InflaterInputStream in project cxf by apache.

the class DeflateEncoderDecoderTest method testInflateDeflateWithTokenDuplication.

@Test
public void testInflateDeflateWithTokenDuplication() throws Exception {
    String token = "valid_grant valid_grant valid_grant valid_grant valid_grant valid_grant";
    DeflateEncoderDecoder deflateEncoderDecoder = new DeflateEncoderDecoder();
    byte[] deflatedToken = deflateEncoderDecoder.deflateToken(token.getBytes());
    String cxfInflatedToken = IOUtils.toString(deflateEncoderDecoder.inflateToken(deflatedToken));
    String streamInflatedToken = IOUtils.toString(new InflaterInputStream(new ByteArrayInputStream(deflatedToken), new Inflater(true)));
    assertEquals(streamInflatedToken, token);
    assertEquals(cxfInflatedToken, token);
}

Example 93 with InflaterInputStream

use of java.util.zip.InflaterInputStream in project vcell by virtualcell.

the class MicroscopyXmlReader method getUShortImage.

/**
 * This method returns a VCIMage object from a XML representation.
 * Creation date: (3/16/2001 3:41:24 PM)
 * @param param org.jdom.Element
 * @return VCImage
 * @throws XmlParseException
 */
private UShortImage getUShortImage(Element param) throws XmlParseException {
    // get the attributes
    Element tempelement = param.getChild(XMLTags.ImageDataTag);
    int aNumX = Integer.parseInt(tempelement.getAttributeValue(XMLTags.XAttrTag));
    int aNumY = Integer.parseInt(tempelement.getAttributeValue(XMLTags.YAttrTag));
    int aNumZ = Integer.parseInt(tempelement.getAttributeValue(XMLTags.ZAttrTag));
    int compressSize = Integer.parseInt(tempelement.getAttributeValue(XMLTags.CompressedSizeTag));
    final int BYTES_PER_SHORT = 2;
    int UNCOMPRESSED_SIZE_BYTES = aNumX * aNumY * aNumZ * BYTES_PER_SHORT;
    // getpixels
    String hexEncodedBytes = tempelement.getText();
    byte[] rawBytes = org.vcell.util.Hex.toBytes(hexEncodedBytes);
    ByteArrayInputStream rawByteArrayInputStream = new ByteArrayInputStream(rawBytes);
    InputStream rawInputStream = rawByteArrayInputStream;
    if (compressSize != UNCOMPRESSED_SIZE_BYTES) {
        rawInputStream = new InflaterInputStream(rawByteArrayInputStream);
    }
    byte[] shortsAsBytes = new byte[UNCOMPRESSED_SIZE_BYTES];
    int readCount = 0;
    try {
        while ((readCount += rawInputStream.read(shortsAsBytes, readCount, shortsAsBytes.length - readCount)) != shortsAsBytes.length) {
        }
    } catch (Exception e) {
        e.printStackTrace();
        throw new XmlParseException("error reading image pixels: ", e);
    } finally {
        if (rawInputStream != null) {
            try {
                rawInputStream.close();
            } catch (Exception e2) {
                e2.printStackTrace();
            }
        }
    }
    ByteBuffer byteBuffer = ByteBuffer.wrap(shortsAsBytes);
    short[] shortPixels = new short[aNumX * aNumY * aNumZ];
    for (int i = 0; i < shortPixels.length; i++) {
        shortPixels[i] = byteBuffer.getShort();
    }
    Element extentElement = param.getChild(XMLTags.ExtentTag);
    Extent extent = null;
    if (extentElement != null) {
        extent = vcellXMLReader.getExtent(extentElement);
    }
    Element originElement = param.getChild(XMLTags.OriginTag);
    Origin origin = null;
    if (originElement != null) {
        origin = vcellXMLReader.getOrigin(originElement);
    }
    // //set attributes
    // String name = this.unMangle( param.getAttributeValue(XMLTags.NameAttrTag) );
    // String annotation = param.getChildText(XMLTags.AnnotationTag);
    UShortImage newimage;
    try {
        newimage = new UShortImage(shortPixels, origin, extent, aNumX, aNumY, aNumZ);
    } catch (ImageException e) {
        e.printStackTrace();
        throw new XmlParseException("error reading image: ", e);
    }
    return newimage;
}

Example 94 with InflaterInputStream

use of java.util.zip.InflaterInputStream in project vcell by virtualcell.

the class VCImageCompressed method getPixels.

/**
 * getPixels method comment.
 */
public byte[] getPixels() throws ImageException {
    try {
        if (uncompressed == null) {
            lg.debug("VCImageCompressed.getPixels()  <<<<<<UNCOMPRESSING>>>>>>");
            ByteArrayInputStream bis = new ByteArrayInputStream(compressedPixels);
            InflaterInputStream iis = new InflaterInputStream(bis);
            int temp;
            byte[] buf = new byte[65536];
            ByteArrayOutputStream bos = new ByteArrayOutputStream();
            while ((temp = iis.read(buf, 0, buf.length)) != -1) {
                bos.write(buf, 0, temp);
            }
            // byte uncompressed[] = new byte[getSizeX()*getSizeY()*getSizeZ()];
            // int result = iis.read(uncompressed,0,getSizeX()*getSizeY()*getSizeZ());
            // return uncompressed;
            uncompressed = bos.toByteArray();
        }
        return uncompressed;
    } catch (IOException e) {
        lg.debug("getPixels( )", e);
        throw new ImageException(e.getMessage());
    }
}

Example 95 with InflaterInputStream

use of java.util.zip.InflaterInputStream in project vcell by virtualcell.

the class BeanUtils method fromCompressedSerialized.

public static Serializable fromCompressedSerialized(byte[] objData) throws ClassNotFoundException, java.io.IOException {
    long before = 0;
    if (lg.isTraceEnabled()) {
        before = System.currentTimeMillis();
    }
    java.io.ByteArrayInputStream bis = new java.io.ByteArrayInputStream(objData);
    InflaterInputStream iis = new InflaterInputStream(bis);
    java.io.ObjectInputStream ois = new java.io.ObjectInputStream(iis);
    Serializable cacheClone = (Serializable) ois.readObject();
    ois.close();
    bis.close();
    if (lg.isTraceEnabled()) {
        long after = System.currentTimeMillis();
        lg.trace("fromCompressedSerialized(): t=" + (after - before) + " ms, (" + cacheClone + ")");
    }
    return cacheClone;
}