Examples with FacesMessage javax.faces.application.FacesMessage used on opensource projects

Example 41 with FacesMessage

use of javax.faces.application.FacesMessage in project fit3d by fkaiserbio.

the class LoginView method submit.

public void submit() throws IOException {
    System.out.println(username + ":" + password);
    FacesContext context = FacesContext.getCurrentInstance();
    ExternalContext externalContext = context.getExternalContext();
    HttpServletRequest request = (HttpServletRequest) externalContext.getRequest();
    try {
        request.login(username, password);
        logger.info("authenticated {}", request.getUserPrincipal());
        externalContext.redirect(requestedUri);
    } catch (ServletException e) {
        context.addMessage(null, new FacesMessage(FacesMessage.SEVERITY_ERROR, "Bad login", null));
        logger.warn("failed login attempt {}:{}", username, password);
    }
}

Example 42 with FacesMessage

use of javax.faces.application.FacesMessage in project fit3d by fkaiserbio.

the class SubmitJobView method analyzeTargetList.

private void analyzeTargetList() throws IOException {
    // check if target list contains exclusively PDB-IDs
    List<String> pdbIdentifiers = Files.lines(targetListPath).filter(Pattern.compile("^" + PDBIdentifier.PATTERN.pattern() + "$").asPredicate()).distinct().collect(Collectors.toList());
    List<String> chainIdentifiers = Files.lines(targetListPath).filter(Pattern.compile("^" + PDBIdentifier.PATTERN.pattern() + "\\s[0-9A-Za-z]+$").asPredicate()).distinct().collect(Collectors.toList());
    if (!pdbIdentifiers.isEmpty() && !chainIdentifiers.isEmpty()) {
        if (!blocked) {
            blocked = true;
            RequestContext.getCurrentInstance().update("mainForm:submitButton");
        }
        FacesMessage message = new FacesMessage(FacesMessage.SEVERITY_ERROR, "Error", "Your target list is a mix of PDB-IDs and chain-IDs.");
        FacesContext.getCurrentInstance().addMessage(null, message);
    } else {
        if (!pdbIdentifiers.isEmpty()) {
            targetListSize = pdbIdentifiers.size();
            chainTargetList = false;
            pdbTargetList = true;
            if (blocked) {
                blocked = false;
                RequestContext.getCurrentInstance().update("mainForm:submitButton");
            }
            targetListPath = jobPath.resolve("targets.txt");
            Files.write(jobPath.resolve("targets.txt"), pdbIdentifiers.stream().collect(Collectors.joining("\n")).getBytes());
            logger.info("copied PDB-ID target list to {}", targetListPath);
        } else if (!chainIdentifiers.isEmpty()) {
            targetListSize = chainIdentifiers.size();
            pdbTargetList = false;
            chainTargetList = true;
            if (blocked) {
                blocked = false;
                RequestContext.getCurrentInstance().update("mainForm:submitButton");
            }
            targetListPath = jobPath.resolve("targets.txt");
            Files.write(targetListPath, chainIdentifiers.stream().collect(Collectors.joining("\n")).getBytes());
            logger.info("copied chain-ID target list to {}", targetListPath);
        } else {
            if (!blocked) {
                blocked = true;
                RequestContext.getCurrentInstance().update("mainForm:submitButton");
            }
            FacesMessage message = new FacesMessage(FacesMessage.SEVERITY_ERROR, "Error", "Your target list does not contain valid PDB-IDs.");
            FacesContext.getCurrentInstance().addMessage(null, message);
        }
    }
}

Example 43 with FacesMessage

use of javax.faces.application.FacesMessage in project fit3d by fkaiserbio.

the class SubmitJobView method submit.

public String submit() {
    // determine if too many jobs were submitted in current session
    int jobCount = getJobCountOfCurrentSession();
    if (jobCount > Fit3DWebConstants.JOB_LIMIT) {
        FacesMessage message = new FacesMessage(FacesMessage.SEVERITY_ERROR, "Error", "Too many jobs submitted. Please wait until until some jobs are finished.");
        FacesContext.getCurrentInstance().addMessage(null, message);
        return null;
    }
    // determine if too many exchanges were defined
    if (exchangeDefinitions != null) {
        int exchangeCount = (int) exchangeDefinitions.stream().map(ExchangeDefinition::getExchangeAminoAcids).mapToLong(Collection::size).sum();
        if (exchangeCount > Fit3DWebConstants.EXCHANGE_LIMIT) {
            FacesMessage message = new FacesMessage(FacesMessage.SEVERITY_ERROR, "Error", "Only " + Fit3DWebConstants.EXCHANGE_LIMIT + " PSEs are allowed. Please use the command line or API version for more complex calculations.");
            FacesContext.getCurrentInstance().addMessage(null, message);
            return null;
        }
    }
    // motif file upload is mandatory
    if (!motifFileUploaded) {
        FacesMessage message = new FacesMessage(FacesMessage.SEVERITY_ERROR, "Error", "A motif file is required.");
        FacesContext.getCurrentInstance().addMessage(null, message);
        return null;
    }
    // use predefined target list if no one was provided
    if (!targetListFileUploaded) {
        if (predefinedList == PredefinedList.NONE) {
            FacesMessage message = new FacesMessage(FacesMessage.SEVERITY_ERROR, "Error", "Please select or upload a target list.");
            FacesContext.getCurrentInstance().addMessage(null, message);
            return null;
        } else {
            targetListPath = predefinedList.getPath();
            chainTargetList = true;
        }
    }
    Fit3DJobParameters jobParameters = new Fit3DJobParameters();
    jobParameters.setAtomFilterType(atomFilterType);
    jobParameters.setChainTargetList(chainTargetList);
    jobParameters.setPdbTargetList(pdbTargetList);
    if (motifPath.endsWith("4cha_motif.pdb")) {
        targetListPath = motifPath.getParent().resolve("targets.txt");
        logger.info("example run detected, using short target list {}", targetListPath);
        motifPath = motifPath.getParent().resolve("4cha_motif.pdb");
    }
    jobParameters.setMotifPath(motifPath);
    jobParameters.setTargetListPath(targetListPath);
    jobParameters.setRmsdLimit(rmsdLimit);
    jobParameters.setExchangeDefinitions(exchangeDefinitions);
    jobParameters.setStatisticalModelType(statisticalModelType);
    Fit3DJob job = new Fit3DJob(jobIdentifier, sessionManager.getSessionIdentifier(), determineIpAddress(), description, email, jobPath, jobParameters);
    FacesContext facesContext = FacesContext.getCurrentInstance();
    Flash flash = facesContext.getExternalContext().getFlash();
    flash.put("job", job);
    return "success";
}

Example 44 with FacesMessage

use of javax.faces.application.FacesMessage in project muikku by otavanopisto.

the class PostRedirectMessagesSupport method beforePhase.

@Override
public void beforePhase(PhaseEvent event) {
    if (PhaseId.RENDER_RESPONSE.equals(event.getPhaseId())) {
        FacesContext facesContext = event.getFacesContext();
        if (!facesContext.getResponseComplete()) {
            Map<String, Object> sessionMap = facesContext.getExternalContext().getSessionMap();
            @SuppressWarnings("unchecked") List<FacesMessage> messages = (List<FacesMessage>) sessionMap.get(FacesUtils.POST_REDIRECT_SESSION_KEY);
            if (messages != null) {
                for (FacesMessage message : messages) {
                    facesContext.addMessage(null, message);
                }
                sessionMap.remove(FacesUtils.POST_REDIRECT_SESSION_KEY);
            }
        }
    }
}

Example 45 with FacesMessage

use of javax.faces.application.FacesMessage in project survey by markoniemi.

the class FacesUtil method showMessage.

public static String showMessage(String id, String messageKey) {
    FacesContext facesContext = FacesContext.getCurrentInstance();
    ResourceBundle resourceBundle = facesContext.getApplication().getResourceBundle(facesContext, "messages");
    String message = resourceBundle.getString(messageKey);
    FacesContext.getCurrentInstance().addMessage(null, new FacesMessage(message));
    return null;
}