Examples with JsonArrayBuilder javax.json.JsonArrayBuilder used on opensource projects

Example 46 with JsonArrayBuilder

use of javax.json.JsonArrayBuilder in project dataverse by IQSS.

the class Admin method builtin2shib.

/**
 * This is used in testing via AdminIT.java but we don't expect sysadmins to
 * use this.
 */
@Path("authenticatedUsers/convert/builtin2shib")
@PUT
public Response builtin2shib(String content) {
    logger.info("entering builtin2shib...");
    try {
        AuthenticatedUser userToRunThisMethod = findAuthenticatedUserOrDie();
        if (!userToRunThisMethod.isSuperuser()) {
            return error(Response.Status.FORBIDDEN, "Superusers only.");
        }
    } catch (WrappedResponse ex) {
        return error(Response.Status.FORBIDDEN, "Superusers only.");
    }
    boolean disabled = false;
    if (disabled) {
        return error(Response.Status.BAD_REQUEST, "API endpoint disabled.");
    }
    AuthenticatedUser builtInUserToConvert = null;
    String emailToFind;
    String password;
    // could let people specify id on authuser table. probably better to let them tell us their
    String authuserId = "0";
    String newEmailAddressToUse;
    try {
        String[] args = content.split(":");
        emailToFind = args[0];
        password = args[1];
        newEmailAddressToUse = args[2];
    // authuserId = args[666];
    } catch (ArrayIndexOutOfBoundsException ex) {
        return error(Response.Status.BAD_REQUEST, "Problem with content <<<" + content + ">>>: " + ex.toString());
    }
    AuthenticatedUser existingAuthUserFoundByEmail = shibService.findAuthUserByEmail(emailToFind);
    String existing = "NOT FOUND";
    if (existingAuthUserFoundByEmail != null) {
        builtInUserToConvert = existingAuthUserFoundByEmail;
        existing = existingAuthUserFoundByEmail.getIdentifier();
    } else {
        long longToLookup = Long.parseLong(authuserId);
        AuthenticatedUser specifiedUserToConvert = authSvc.findByID(longToLookup);
        if (specifiedUserToConvert != null) {
            builtInUserToConvert = specifiedUserToConvert;
        } else {
            return error(Response.Status.BAD_REQUEST, "No user to convert. We couldn't find a *single* existing user account based on " + emailToFind + " and no user was found using specified id " + longToLookup);
        }
    }
    String shibProviderId = ShibAuthenticationProvider.PROVIDER_ID;
    Map<String, String> randomUser = authTestDataService.getRandomUser();
    // String eppn = UUID.randomUUID().toString().substring(0, 8);
    String eppn = randomUser.get("eppn");
    String idPEntityId = randomUser.get("idp");
    String notUsed = null;
    String separator = "|";
    UserIdentifier newUserIdentifierInLookupTable = new UserIdentifier(idPEntityId + separator + eppn, notUsed);
    String overwriteFirstName = randomUser.get("firstName");
    String overwriteLastName = randomUser.get("lastName");
    String overwriteEmail = randomUser.get("email");
    overwriteEmail = newEmailAddressToUse;
    logger.info("overwriteEmail: " + overwriteEmail);
    boolean validEmail = EMailValidator.isEmailValid(overwriteEmail, null);
    if (!validEmail) {
        // See https://github.com/IQSS/dataverse/issues/2998
        return error(Response.Status.BAD_REQUEST, "invalid email: " + overwriteEmail);
    }
    /**
     * @todo If affiliation is not null, put it in RoleAssigneeDisplayInfo
     * constructor.
     */
    /**
     * Here we are exercising (via an API test) shibService.getAffiliation
     * with the TestShib IdP and a non-production DevShibAccountType.
     */
    idPEntityId = ShibUtil.testShibIdpEntityId;
    String overwriteAffiliation = shibService.getAffiliation(idPEntityId, ShibServiceBean.DevShibAccountType.RANDOM);
    logger.info("overwriteAffiliation: " + overwriteAffiliation);
    /**
     * @todo Find a place to put "position" in the authenticateduser table:
     * https://github.com/IQSS/dataverse/issues/1444#issuecomment-74134694
     */
    String overwritePosition = "staff;student";
    AuthenticatedUserDisplayInfo displayInfo = new AuthenticatedUserDisplayInfo(overwriteFirstName, overwriteLastName, overwriteEmail, overwriteAffiliation, overwritePosition);
    JsonObjectBuilder response = Json.createObjectBuilder();
    JsonArrayBuilder problems = Json.createArrayBuilder();
    if (password != null) {
        response.add("password supplied", password);
        boolean knowsExistingPassword = false;
        BuiltinUser oldBuiltInUser = builtinUserService.findByUserName(builtInUserToConvert.getUserIdentifier());
        if (oldBuiltInUser != null) {
            String usernameOfBuiltinAccountToConvert = oldBuiltInUser.getUserName();
            response.add("old username", usernameOfBuiltinAccountToConvert);
            AuthenticatedUser authenticatedUser = authSvc.canLogInAsBuiltinUser(usernameOfBuiltinAccountToConvert, password);
            if (authenticatedUser != null) {
                knowsExistingPassword = true;
                AuthenticatedUser convertedUser = authSvc.convertBuiltInToShib(builtInUserToConvert, shibProviderId, newUserIdentifierInLookupTable);
                if (convertedUser != null) {
                    /**
                     * @todo Display name is not being overwritten. Logic
                     * must be in Shib backing bean
                     */
                    AuthenticatedUser updatedInfoUser = authSvc.updateAuthenticatedUser(convertedUser, displayInfo);
                    if (updatedInfoUser != null) {
                        response.add("display name overwritten with", updatedInfoUser.getName());
                    } else {
                        problems.add("couldn't update display info");
                    }
                } else {
                    problems.add("unable to convert user");
                }
            }
        } else {
            problems.add("couldn't find old username");
        }
        if (!knowsExistingPassword) {
            String message = "User doesn't know password.";
            problems.add(message);
            /**
             * @todo Someday we should make a errorResponse method that
             * takes JSON arrays and objects.
             */
            return error(Status.BAD_REQUEST, problems.build().toString());
        }
    // response.add("knows existing password", knowsExistingPassword);
    }
    response.add("user to convert", builtInUserToConvert.getIdentifier());
    response.add("existing user found by email (prompt to convert)", existing);
    response.add("changing to this provider", shibProviderId);
    response.add("value to overwrite old first name", overwriteFirstName);
    response.add("value to overwrite old last name", overwriteLastName);
    response.add("value to overwrite old email address", overwriteEmail);
    if (overwriteAffiliation != null) {
        response.add("affiliation", overwriteAffiliation);
    }
    response.add("problems", problems);
    return ok(response);
}

Example 47 with JsonArrayBuilder

use of javax.json.JsonArrayBuilder in project dataverse by IQSS.

the class Admin method listAuthenticatedUsers.

@Deprecated
@GET
@Path("authenticatedUsers")
public Response listAuthenticatedUsers() {
    try {
        AuthenticatedUser user = findAuthenticatedUserOrDie();
        if (!user.isSuperuser()) {
            return error(Response.Status.FORBIDDEN, "Superusers only.");
        }
    } catch (WrappedResponse ex) {
        return error(Response.Status.FORBIDDEN, "Superusers only.");
    }
    JsonArrayBuilder userArray = Json.createArrayBuilder();
    authSvc.findAllAuthenticatedUsers().stream().forEach((user) -> {
        userArray.add(json(user));
    });
    return ok(userArray);
}

Example 48 with JsonArrayBuilder

use of javax.json.JsonArrayBuilder in project dataverse by IQSS.

the class Admin method builtin2oauth.

/**
 * This is used in testing via AdminIT.java but we don't expect sysadmins to
 * use this.
 */
@Path("authenticatedUsers/convert/builtin2oauth")
@PUT
public Response builtin2oauth(String content) {
    logger.info("entering builtin2oauth...");
    try {
        AuthenticatedUser userToRunThisMethod = findAuthenticatedUserOrDie();
        if (!userToRunThisMethod.isSuperuser()) {
            return error(Response.Status.FORBIDDEN, "Superusers only.");
        }
    } catch (WrappedResponse ex) {
        return error(Response.Status.FORBIDDEN, "Superusers only.");
    }
    boolean disabled = false;
    if (disabled) {
        return error(Response.Status.BAD_REQUEST, "API endpoint disabled.");
    }
    AuthenticatedUser builtInUserToConvert = null;
    String emailToFind;
    String password;
    // could let people specify id on authuser table. probably better to let them tell us their
    String authuserId = "0";
    String newEmailAddressToUse;
    String newProviderId;
    String newPersistentUserIdInLookupTable;
    logger.info("content: " + content);
    try {
        String[] args = content.split(":");
        emailToFind = args[0];
        password = args[1];
        newEmailAddressToUse = args[2];
        newProviderId = args[3];
        newPersistentUserIdInLookupTable = args[4];
    // authuserId = args[666];
    } catch (ArrayIndexOutOfBoundsException ex) {
        return error(Response.Status.BAD_REQUEST, "Problem with content <<<" + content + ">>>: " + ex.toString());
    }
    AuthenticatedUser existingAuthUserFoundByEmail = shibService.findAuthUserByEmail(emailToFind);
    String existing = "NOT FOUND";
    if (existingAuthUserFoundByEmail != null) {
        builtInUserToConvert = existingAuthUserFoundByEmail;
        existing = existingAuthUserFoundByEmail.getIdentifier();
    } else {
        long longToLookup = Long.parseLong(authuserId);
        AuthenticatedUser specifiedUserToConvert = authSvc.findByID(longToLookup);
        if (specifiedUserToConvert != null) {
            builtInUserToConvert = specifiedUserToConvert;
        } else {
            return error(Response.Status.BAD_REQUEST, "No user to convert. We couldn't find a *single* existing user account based on " + emailToFind + " and no user was found using specified id " + longToLookup);
        }
    }
    // String shibProviderId = ShibAuthenticationProvider.PROVIDER_ID;
    Map<String, String> randomUser = authTestDataService.getRandomUser();
    // String eppn = UUID.randomUUID().toString().substring(0, 8);
    String eppn = randomUser.get("eppn");
    String idPEntityId = randomUser.get("idp");
    String notUsed = null;
    String separator = "|";
    // UserIdentifier newUserIdentifierInLookupTable = new UserIdentifier(idPEntityId + separator + eppn, notUsed);
    UserIdentifier newUserIdentifierInLookupTable = new UserIdentifier(newPersistentUserIdInLookupTable, notUsed);
    String overwriteFirstName = randomUser.get("firstName");
    String overwriteLastName = randomUser.get("lastName");
    String overwriteEmail = randomUser.get("email");
    overwriteEmail = newEmailAddressToUse;
    logger.info("overwriteEmail: " + overwriteEmail);
    boolean validEmail = EMailValidator.isEmailValid(overwriteEmail, null);
    if (!validEmail) {
        // See https://github.com/IQSS/dataverse/issues/2998
        return error(Response.Status.BAD_REQUEST, "invalid email: " + overwriteEmail);
    }
    /**
     * @todo If affiliation is not null, put it in RoleAssigneeDisplayInfo
     * constructor.
     */
    /**
     * Here we are exercising (via an API test) shibService.getAffiliation
     * with the TestShib IdP and a non-production DevShibAccountType.
     */
    // idPEntityId = ShibUtil.testShibIdpEntityId;
    // String overwriteAffiliation = shibService.getAffiliation(idPEntityId, ShibServiceBean.DevShibAccountType.RANDOM);
    String overwriteAffiliation = null;
    logger.info("overwriteAffiliation: " + overwriteAffiliation);
    /**
     * @todo Find a place to put "position" in the authenticateduser table:
     * https://github.com/IQSS/dataverse/issues/1444#issuecomment-74134694
     */
    String overwritePosition = "staff;student";
    AuthenticatedUserDisplayInfo displayInfo = new AuthenticatedUserDisplayInfo(overwriteFirstName, overwriteLastName, overwriteEmail, overwriteAffiliation, overwritePosition);
    JsonObjectBuilder response = Json.createObjectBuilder();
    JsonArrayBuilder problems = Json.createArrayBuilder();
    if (password != null) {
        response.add("password supplied", password);
        boolean knowsExistingPassword = false;
        BuiltinUser oldBuiltInUser = builtinUserService.findByUserName(builtInUserToConvert.getUserIdentifier());
        if (oldBuiltInUser != null) {
            String usernameOfBuiltinAccountToConvert = oldBuiltInUser.getUserName();
            response.add("old username", usernameOfBuiltinAccountToConvert);
            AuthenticatedUser authenticatedUser = authSvc.canLogInAsBuiltinUser(usernameOfBuiltinAccountToConvert, password);
            if (authenticatedUser != null) {
                knowsExistingPassword = true;
                AuthenticatedUser convertedUser = authSvc.convertBuiltInUserToRemoteUser(builtInUserToConvert, newProviderId, newUserIdentifierInLookupTable);
                if (convertedUser != null) {
                    /**
                     * @todo Display name is not being overwritten. Logic
                     * must be in Shib backing bean
                     */
                    AuthenticatedUser updatedInfoUser = authSvc.updateAuthenticatedUser(convertedUser, displayInfo);
                    if (updatedInfoUser != null) {
                        response.add("display name overwritten with", updatedInfoUser.getName());
                    } else {
                        problems.add("couldn't update display info");
                    }
                } else {
                    problems.add("unable to convert user");
                }
            }
        } else {
            problems.add("couldn't find old username");
        }
        if (!knowsExistingPassword) {
            String message = "User doesn't know password.";
            problems.add(message);
            /**
             * @todo Someday we should make a errorResponse method that
             * takes JSON arrays and objects.
             */
            return error(Status.BAD_REQUEST, problems.build().toString());
        }
    // response.add("knows existing password", knowsExistingPassword);
    }
    response.add("user to convert", builtInUserToConvert.getIdentifier());
    response.add("existing user found by email (prompt to convert)", existing);
    response.add("changing to this provider", newProviderId);
    response.add("value to overwrite old first name", overwriteFirstName);
    response.add("value to overwrite old last name", overwriteLastName);
    response.add("value to overwrite old email address", overwriteEmail);
    if (overwriteAffiliation != null) {
        response.add("affiliation", overwriteAffiliation);
    }
    response.add("problems", problems);
    return ok(response);
}

Example 49 with JsonArrayBuilder

use of javax.json.JsonArrayBuilder in project dataverse by IQSS.

the class BatchServiceBean method processFilePath.

@Asynchronous
public void processFilePath(String fileDir, String parentIdtf, DataverseRequest dataverseRequest, Dataverse owner, ImportUtil.ImportType importType, Boolean createDV) {
    logger.info("BEGIN IMPORT");
    PrintWriter validationLog = null;
    PrintWriter cleanupLog = null;
    try {
        JsonArrayBuilder status = Json.createArrayBuilder();
        Date timestamp = new Date();
        SimpleDateFormat formatter = new SimpleDateFormat("yyyy-MM-dd_HH:mm:ss");
        validationLog = new PrintWriter(new FileWriter("../logs/validationLog" + formatter.format(timestamp) + ".txt"));
        cleanupLog = new PrintWriter(new FileWriter("../logs/cleanupLog" + formatter.format(timestamp) + ".txt"));
        File dir = new File(fileDir);
        if (dir.isDirectory()) {
            for (File file : dir.listFiles()) {
                if (!file.isHidden()) {
                    if (file.isDirectory()) {
                        try {
                            status.add(handleDirectory(dataverseRequest, file, importType, validationLog, cleanupLog, createDV));
                        } catch (ImportException e) {
                            logger.log(Level.SEVERE, "Exception in handleDirectory() for " + file.getName(), e);
                        }
                    } else {
                        try {
                            status.add(importService.handleFile(dataverseRequest, owner, file, importType, validationLog, cleanupLog));
                        } catch (ImportException e) {
                            logger.log(Level.SEVERE, "Exception in handleFile() for " + file.getName(), e);
                        }
                    }
                }
            }
        } else {
            status.add(importService.handleFile(dataverseRequest, owner, dir, importType, validationLog, cleanupLog));
        }
    } catch (Exception e) {
        logger.log(Level.SEVERE, "Exception in processFilePath()", e);
    } finally {
        validationLog.close();
        cleanupLog.close();
    }
    logger.info("END IMPORT");
}

Example 50 with JsonArrayBuilder

use of javax.json.JsonArrayBuilder in project dataverse by IQSS.

the class JsonParserTest method testparseFiles.

@Test
public void testparseFiles() throws JsonParseException {
    JsonArrayBuilder metadatasJsonBuilder = Json.createArrayBuilder();
    JsonObjectBuilder fileMetadataGood = Json.createObjectBuilder();
    fileMetadataGood.add("label", "myLabel");
    JsonObjectBuilder fileGood = Json.createObjectBuilder();
    fileMetadataGood.add("dataFile", fileGood);
    fileMetadataGood.add("categories", Json.createArrayBuilder().add("Documentation"));
    JsonObjectBuilder fileMetadataBad = Json.createObjectBuilder();
    fileMetadataBad.add("label", "bad");
    JsonObjectBuilder fileBad = Json.createObjectBuilder();
    fileMetadataBad.add("dataFile", fileBad);
    fileMetadataBad.add("categories", Json.createArrayBuilder().add(BigDecimal.ONE));
    metadatasJsonBuilder.add(fileMetadataGood);
    metadatasJsonBuilder.add(fileMetadataBad);
    JsonArray metadatasJson = metadatasJsonBuilder.build();
    DatasetVersion dsv = new DatasetVersion();
    Dataset dataset = new Dataset();
    dsv.setDataset(dataset);
    List<FileMetadata> fileMetadatas = new JsonParser().parseFiles(metadatasJson, dsv);
    System.out.println("fileMetadatas: " + fileMetadatas);
    assertEquals("myLabel", fileMetadatas.get(0).getLabel());
    assertEquals("Documentation", fileMetadatas.get(0).getCategories().get(0).getName());
    assertEquals(null, fileMetadatas.get(1).getCategories());
    List<FileMetadata> codeCoverage = new JsonParser().parseFiles(Json.createArrayBuilder().add(Json.createObjectBuilder().add("label", "myLabel").add("dataFile", Json.createObjectBuilder().add("categories", JsonValue.NULL))).build(), dsv);
    assertEquals(null, codeCoverage.get(0).getCategories());
}