use of javax.json.JsonReader in project CoreNLP by stanfordnlp.
the class ScorePhrases method learnNewPhrasesPrivate.
private Counter<CandidatePhrase> learnNewPhrasesPrivate(String label, PatternsForEachToken patternsForEachToken, Counter<E> patternsLearnedThisIter, Counter<E> allSelectedPatterns, Set<CandidatePhrase> alreadyIdentifiedWords, CollectionValuedMap<E, Triple<String, Integer, Integer>> matchedTokensByPat, Counter<CandidatePhrase> scoreForAllWordsThisIteration, TwoDimensionalCounter<CandidatePhrase, E> terms, TwoDimensionalCounter<CandidatePhrase, E> wordsPatExtracted, TwoDimensionalCounter<E, CandidatePhrase> patternsAndWords4Label, String identifier, Set<CandidatePhrase> ignoreWords, boolean computeProcDataFreq) throws IOException, ClassNotFoundException {
Set<CandidatePhrase> alreadyLabeledWords = new HashSet<>();
if (constVars.doNotApplyPatterns) {
// if want to get the stats by the lossy way of just counting without
// applying the patterns
ConstantsAndVariables.DataSentsIterator sentsIter = new ConstantsAndVariables.DataSentsIterator(constVars.batchProcessSents);
while (sentsIter.hasNext()) {
Pair<Map<String, DataInstance>, File> sentsf = sentsIter.next();
this.statsWithoutApplyingPatterns(sentsf.first(), patternsForEachToken, patternsLearnedThisIter, wordsPatExtracted);
}
} else {
if (patternsLearnedThisIter.size() > 0) {
this.applyPats(patternsLearnedThisIter, label, wordsPatExtracted, matchedTokensByPat, alreadyLabeledWords);
}
}
if (computeProcDataFreq) {
if (!phraseScorer.wordFreqNorm.equals(Normalization.NONE)) {
Redwood.log(Redwood.DBG, "computing processed freq");
for (Entry<CandidatePhrase, Double> fq : Data.rawFreq.entrySet()) {
Double in = fq.getValue();
if (phraseScorer.wordFreqNorm.equals(Normalization.SQRT))
in = Math.sqrt(in);
else if (phraseScorer.wordFreqNorm.equals(Normalization.LOG))
in = 1 + Math.log(in);
else
throw new RuntimeException("can't understand the normalization");
assert !in.isNaN() : "Why is processed freq nan when rawfreq is " + in;
Data.processedDataFreq.setCount(fq.getKey(), in);
}
} else
Data.processedDataFreq = Data.rawFreq;
}
if (constVars.wordScoring.equals(WordScoring.WEIGHTEDNORM)) {
for (CandidatePhrase en : wordsPatExtracted.firstKeySet()) {
if (!constVars.getOtherSemanticClassesWords().contains(en) && (en.getPhraseLemma() == null || !constVars.getOtherSemanticClassesWords().contains(CandidatePhrase.createOrGet(en.getPhraseLemma()))) && !alreadyLabeledWords.contains(en)) {
terms.addAll(en, wordsPatExtracted.getCounter(en));
}
}
removeKeys(terms, constVars.getStopWords());
Counter<CandidatePhrase> phraseScores = phraseScorer.scorePhrases(label, terms, wordsPatExtracted, allSelectedPatterns, alreadyIdentifiedWords, false);
System.out.println("count for word U.S. is " + phraseScores.getCount(CandidatePhrase.createOrGet("U.S.")));
Set<CandidatePhrase> ignoreWordsAll;
if (ignoreWords != null && !ignoreWords.isEmpty()) {
ignoreWordsAll = CollectionUtils.unionAsSet(ignoreWords, constVars.getOtherSemanticClassesWords());
} else
ignoreWordsAll = new HashSet<>(constVars.getOtherSemanticClassesWords());
ignoreWordsAll.addAll(constVars.getSeedLabelDictionary().get(label));
ignoreWordsAll.addAll(constVars.getLearnedWords(label).keySet());
System.out.println("ignoreWordsAll contains word U.S. is " + ignoreWordsAll.contains(CandidatePhrase.createOrGet("U.S.")));
Counter<CandidatePhrase> finalwords = chooseTopWords(phraseScores, terms, phraseScores, ignoreWordsAll, constVars.thresholdWordExtract);
phraseScorer.printReasonForChoosing(finalwords);
scoreForAllWordsThisIteration.clear();
Counters.addInPlace(scoreForAllWordsThisIteration, phraseScores);
Redwood.log(ConstantsAndVariables.minimaldebug, "\n\n## Selected Words for " + label + " : " + Counters.toSortedString(finalwords, finalwords.size(), "%1$s:%2$.2f", "\t"));
if (constVars.goldEntities != null) {
Map<String, Boolean> goldEntities4Label = constVars.goldEntities.get(label);
if (goldEntities4Label != null) {
StringBuffer s = new StringBuffer();
finalwords.keySet().stream().forEach(x -> s.append(x.getPhrase() + (goldEntities4Label.containsKey(x.getPhrase()) ? ":" + goldEntities4Label.get(x.getPhrase()) : ":UKNOWN") + "\n"));
Redwood.log(ConstantsAndVariables.minimaldebug, "\n\n## Gold labels for selected words for label " + label + " : " + s.toString());
} else
Redwood.log(Redwood.DBG, "No gold entities provided for label " + label);
}
if (constVars.outDir != null && !constVars.outDir.isEmpty()) {
String outputdir = constVars.outDir + "/" + identifier + "/" + label;
IOUtils.ensureDir(new File(outputdir));
TwoDimensionalCounter<CandidatePhrase, CandidatePhrase> reasonForWords = new TwoDimensionalCounter<>();
for (CandidatePhrase word : finalwords.keySet()) {
for (E l : wordsPatExtracted.getCounter(word).keySet()) {
for (CandidatePhrase w2 : patternsAndWords4Label.getCounter(l)) {
reasonForWords.incrementCount(word, w2);
}
}
}
Redwood.log(ConstantsAndVariables.minimaldebug, "Saving output in " + outputdir);
String filename = outputdir + "/words.json";
// the json object is an array corresponding to each iteration - of list
// of objects,
// each of which is a bean of entity and reasons
JsonArrayBuilder obj = Json.createArrayBuilder();
if (writtenInJustification.containsKey(label) && writtenInJustification.get(label)) {
JsonReader jsonReader = Json.createReader(new BufferedInputStream(new FileInputStream(filename)));
JsonArray objarr = jsonReader.readArray();
for (JsonValue o : objarr) obj.add(o);
jsonReader.close();
}
JsonArrayBuilder objThisIter = Json.createArrayBuilder();
for (CandidatePhrase w : reasonForWords.firstKeySet()) {
JsonObjectBuilder objinner = Json.createObjectBuilder();
JsonArrayBuilder l = Json.createArrayBuilder();
for (CandidatePhrase w2 : reasonForWords.getCounter(w).keySet()) {
l.add(w2.getPhrase());
}
JsonArrayBuilder pats = Json.createArrayBuilder();
for (E p : wordsPatExtracted.getCounter(w)) {
pats.add(p.toStringSimple());
}
objinner.add("reasonwords", l);
objinner.add("patterns", pats);
objinner.add("score", finalwords.getCount(w));
objinner.add("entity", w.getPhrase());
objThisIter.add(objinner.build());
}
obj.add(objThisIter);
// Redwood.log(ConstantsAndVariables.minimaldebug, channelNameLogger,
// "Writing justification at " + filename);
IOUtils.writeStringToFile(StringUtils.normalize(StringUtils.toAscii(obj.build().toString())), filename, "ASCII");
writtenInJustification.put(label, true);
}
if (constVars.justify) {
Redwood.log(Redwood.DBG, "\nJustification for phrases:\n");
for (CandidatePhrase word : finalwords.keySet()) {
Redwood.log(Redwood.DBG, "Phrase " + word + " extracted because of patterns: \t" + Counters.toSortedString(wordsPatExtracted.getCounter(word), wordsPatExtracted.getCounter(word).size(), "%1$s:%2$f", "\n"));
}
}
return finalwords;
} else if (constVars.wordScoring.equals(WordScoring.BPB)) {
Counters.addInPlace(terms, wordsPatExtracted);
Counter<CandidatePhrase> maxPatWeightTerms = new ClassicCounter<>();
Map<CandidatePhrase, E> wordMaxPat = new HashMap<>();
for (Entry<CandidatePhrase, ClassicCounter<E>> en : terms.entrySet()) {
Counter<E> weights = new ClassicCounter<>();
for (E k : en.getValue().keySet()) weights.setCount(k, patternsLearnedThisIter.getCount(k));
maxPatWeightTerms.setCount(en.getKey(), Counters.max(weights));
wordMaxPat.put(en.getKey(), Counters.argmax(weights));
}
Counters.removeKeys(maxPatWeightTerms, alreadyIdentifiedWords);
double maxvalue = Counters.max(maxPatWeightTerms);
Set<CandidatePhrase> words = Counters.keysAbove(maxPatWeightTerms, maxvalue - 1e-10);
CandidatePhrase bestw = null;
if (words.size() > 1) {
double max = Double.NEGATIVE_INFINITY;
for (CandidatePhrase w : words) {
if (terms.getCount(w, wordMaxPat.get(w)) > max) {
max = terms.getCount(w, wordMaxPat.get(w));
bestw = w;
}
}
} else if (words.size() == 1)
bestw = words.iterator().next();
else
return new ClassicCounter<>();
Redwood.log(ConstantsAndVariables.minimaldebug, "Selected Words: " + bestw);
return Counters.asCounter(Arrays.asList(bestw));
} else
throw new RuntimeException("wordscoring " + constVars.wordScoring + " not identified");
}
use of javax.json.JsonReader in project torodb by torodb.
the class ToroIndexConverter method from.
@Override
public NamedToroIndex from(String databaseObject) {
JsonReader reader = Json.createReader(new StringReader(databaseObject));
JsonObject object = reader.readObject();
IndexedAttributes.Builder builder = new IndexedAttributes.Builder();
JsonArray attsArray = object.getJsonArray(ATTS_KEY);
Set<Integer> descendingAttPos;
if (object.containsKey(DESCENDING)) {
JsonArray descArray = object.getJsonArray(DESCENDING);
descendingAttPos = Sets.newHashSetWithExpectedSize(descArray.size());
for (int i = 0; i < descArray.size(); i++) {
descendingAttPos.add(descArray.getInt(i));
}
} else {
descendingAttPos = Collections.emptySet();
}
for (int i = 0; i < attsArray.size(); i++) {
String att = attsArray.getString(i);
AttributeReference attRef = parseAttRef(att);
if (descendingAttPos.contains(i)) {
builder.addAttribute(attRef, IndexType.desc);
} else {
builder.addAttribute(attRef, IndexType.asc);
}
}
return new DefaultNamedToroIndex(object.getString(NAME_KEY), builder.build(), databaseName, collectionName, object.getBoolean(UNIQUE_KEY, false));
}
use of javax.json.JsonReader in project mysql_perf_analyzer by yahoo.
the class SNMPSettings method readConfig.
private synchronized boolean readConfig() {
File cfgFile = new File(this.myperfSnmpConfigPath);
if (!cfgFile.exists()) {
logger.info("There is no customized snmp configuration file");
return true;
}
FileInputStream in = null;
try {
in = new FileInputStream(cfgFile);
JsonReader jr = javax.json.Json.createReader(in);
JsonObject jsonObject = jr.readObject();
jr.close();
this.setSiteSetting(readFromJson(jsonObject.getJsonObject("site")));
JsonArray groups = jsonObject.getJsonArray("group");
if (groups != null) {
int len = groups.size();
for (int i = 0; i < len; i++) {
JsonObject grp = groups.getJsonObject(i);
SNMPSetting grpSetting = readFromJson(grp);
String grpName = grp.getString("dbgroup", null);
if (grpName != null && grpSetting != null)
this.groupSettings.put(grpName, grpSetting);
}
}
JsonArray hosts = jsonObject.getJsonArray("host");
if (hosts != null) {
int len = hosts.size();
for (int i = 0; i < len; i++) {
JsonObject host = hosts.getJsonObject(i);
SNMPSetting hostSetting = readFromJson(host);
String hostName = host.getString("dbhost", null);
if (hostName != null && hostSetting != null)
this.hostSettings.put(hostName, hostSetting);
}
}
return true;
} catch (Exception ex) {
logger.log(Level.SEVERE, "Failed to read SNMP configuration file " + cfgFile.getAbsolutePath(), ex);
} finally {
if (in != null) {
try {
in.close();
} catch (Exception fex) {
}
;
}
}
return false;
}
use of javax.json.JsonReader in project mysql_perf_analyzer by yahoo.
the class AlertDefinition method createFromJson.
public static AlertDefinition createFromJson(java.io.InputStream in) {
JsonReader jsonReader = null;
AlertDefinition alert = null;
try {
jsonReader = javax.json.Json.createReader(in);
JsonObject jsonObject = jsonReader.readObject();
jsonReader.close();
alert = new AlertDefinition(jsonObject.getString("name"));
alert.setSource(jsonObject.getString("source"));
alert.setMetricName(jsonObject.getString("metricName", null));
alert.setMetricValueType(jsonObject.getString("metricValueType", null));
alert.setMetricComparison(jsonObject.getString("metricComparison", null));
try {
alert.setDefaultThreshold(Float.parseFloat(jsonObject.getString("defaultThreshold", null)));
} catch (Exception ex) {
}
alert.setSqlId(jsonObject.getString("sqlId", null));
alert.setSqlText(jsonObject.getString("sqlText", null));
JsonArray params = jsonObject.getJsonArray("params");
if (params != null) {
int mlen = params.size();
for (int i = 0; i < mlen; i++) {
JsonObject mobj = params.getJsonObject(i);
alert.addParam(mobj.getString("name"), mobj.getString("defaultValue"));
}
}
return alert;
} catch (Exception ex) {
logger.log(Level.WARNING, "Error to parse UDM", ex);
}
return null;
}
use of javax.json.JsonReader in project azure-iot-sdk-java by Azure.
the class IotHubExceptionManager method httpResponseVerification.
/**
* Verify Http response using response status
*
* @param httpResponse Http response object to verify
* @throws IotHubBadFormatException This exception is thrown if the response status equal 400
* @throws IotHubUnathorizedException This exception is thrown if the response status equal 401
* @throws IotHubTooManyDevicesException This exception is thrown if the response status equal 403
* @throws IotHubNotFoundException This exception is thrown if the response status equal 404
* @throws IotHubPreconditionFailedException This exception is thrown if the response status equal 412
* @throws IotHubTooManyRequestsException This exception is thrown if the response status equal 429
* @throws IotHubInternalServerErrorException This exception is thrown if the response status equal 500
* @throws IotHubBadGatewayException This exception is thrown if the response status equal 502
* @throws IotHubServerBusyException This exception is thrown if the response status equal 503
* @throws IotHubGatewayTimeoutException This exception is thrown if the response status equal 504
* @throws IotHubException This exception is thrown if the response status none of them above and greater then 300
*/
public static void httpResponseVerification(HttpResponse httpResponse) throws IotHubBadFormatException, IotHubUnathorizedException, IotHubTooManyDevicesException, IotHubPreconditionFailedException, IotHubTooManyRequestsException, IotHubInternalServerErrorException, IotHubServerBusyException, IotHubBadGatewayException, IotHubNotFoundException, IotHubGatewayTimeoutException, IotHubException {
int responseStatus = httpResponse.getStatus();
String errorMessage = "";
try {
String jsonString = new String(httpResponse.getErrorReason(), StandardCharsets.UTF_8);
try (JsonReader jsonReader = Json.createReader(new StringReader(jsonString))) {
JsonObject jsonObject = jsonReader.readObject();
if ((jsonObject != JsonObject.NULL) && (jsonObject != null)) {
errorMessage = Tools.getValueFromJsonObject(jsonObject, "ExceptionMessage");
}
}
} catch (Exception e) {
/* If it cannot parser the errorReason, just log a error without message.*/
// Codes_SRS_SERVICE_SDK_JAVA_IOTHUBEXCEPTIONMANAGER_21_013: [If the httpresponse contains a reason message, the function must print this reason in the error message]
}
// Codes_SRS_SERVICE_SDK_JAVA_IOTHUBEXCEPTIONMANAGER_12_001: [The function shall throw IotHubBadFormatException if the Http response status equal 400]
if (400 == responseStatus) {
throw new IotHubBadFormatException(errorMessage);
} else // Codes_SRS_SERVICE_SDK_JAVA_IOTHUBEXCEPTIONMANAGER_12_002: [The function shall throw IotHubUnathorizedException if the Http response status equal 401]
if (401 == responseStatus) {
throw new IotHubUnathorizedException(errorMessage);
} else // Codes_SRS_SERVICE_SDK_JAVA_IOTHUBEXCEPTIONMANAGER_12_003: [The function shall throw IotHubTooManyDevicesException if the Http response status equal 403]
if (403 == responseStatus) {
throw new IotHubTooManyDevicesException(errorMessage);
} else // Codes_SRS_SERVICE_SDK_JAVA_IOTHUBEXCEPTIONMANAGER_12_004: [The function shall throw IotHubNotFoundException if the Http response status equal 404]
if (404 == responseStatus) {
throw new IotHubNotFoundException(errorMessage);
} else // Codes_SRS_SERVICE_SDK_JAVA_IOTHUBEXCEPTIONMANAGER_12_005: [The function shall throw IotHubPreconditionFailedException if the Http response status equal 412]
if (412 == responseStatus) {
throw new IotHubPreconditionFailedException(errorMessage);
} else // Codes_SRS_SERVICE_SDK_JAVA_IOTHUBEXCEPTIONMANAGER_12_006: [The function shall throw IotHubTooManyRequestsException if the Http response status equal 429]
if (429 == responseStatus) {
throw new IotHubTooManyRequestsException(errorMessage);
} else // Codes_SRS_SERVICE_SDK_JAVA_IOTHUBEXCEPTIONMANAGER_12_007: [The function shall throw IotHubInternalServerErrorException if the Http response status equal 500]
if (500 == responseStatus) {
throw new IotHubInternalServerErrorException(errorMessage);
} else // Codes_SRS_SERVICE_SDK_JAVA_IOTHUBEXCEPTIONMANAGER_21_008: [The function shall throw IotHubBadGatewayException if the Http response status equal 502]
if (502 == responseStatus) {
throw new IotHubBadGatewayException(errorMessage);
} else // Codes_SRS_SERVICE_SDK_JAVA_IOTHUBEXCEPTIONMANAGER_12_009: [The function shall throw IotHubServerBusyException if the Http response status equal 503]
if (503 == responseStatus) {
throw new IotHubServerBusyException(errorMessage);
} else // Codes_SRS_SERVICE_SDK_JAVA_IOTHUBEXCEPTIONMANAGER_21_010: [The function shall throw IotHubGatewayTimeoutException if the Http response status equal 504]
if (504 == responseStatus) {
throw new IotHubGatewayTimeoutException(errorMessage);
} else // Codes_SRS_SERVICE_SDK_JAVA_IOTHUBEXCEPTIONMANAGER_12_011: [The function shall throw IotHubException if the Http response status none of them above and greater than 300 copying the error Http reason to the exception]
if (responseStatus > 300) {
if (errorMessage.isEmpty()) {
throw new IotHubException("Unknown error reason");
} else {
throw new IotHubException(errorMessage);
}
}
// Codes_SRS_SERVICE_SDK_JAVA_IOTHUBEXCEPTIONMANAGER_12_012: [The function shall return without exception if the response status equal or less than 300]
}
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