Examples with JPanel javax.swing.JPanel used on opensource projects

Example 86 with JPanel

use of javax.swing.JPanel in project EnrichmentMapApp by BaderLab.

the class EdgeWidthDialog method createSignatureSetPanel.

private JPanel createSignatureSetPanel() {
    JPanel panel = new JPanel();
    panel.setBorder(LookAndFeelUtil.createTitledBorder("Signature Set (Post Analysis)"));
    panel.setLayout(new GridBagLayout());
    GridBagConstraints gbc;
    JLabel pValueLabel = new JLabel("p-value:  ");
    gbc = gridBagConstraints(0, 0);
    gbc.weightx = 1.0;
    panel.add(pValueLabel, gbc);
    JLabel lessThan100 = new JLabel("<= cutoff/100     ");
    gbc = gridBagConstraints(1, 0);
    panel.add(lessThan100, gbc);
    JLabel lessThan10 = new JLabel("<= cutoff/10     ");
    gbc = gridBagConstraints(2, 0);
    panel.add(lessThan10, gbc);
    JLabel greaterThan = new JLabel("> cutoff/10     ");
    gbc = gridBagConstraints(3, 0);
    panel.add(greaterThan, gbc);
    // Width
    JLabel widthLabel = new JLabel("Width:");
    gbc = gridBagConstraints(0, 1);
    panel.add(widthLabel, gbc);
    lessThan100Text = new JFormattedTextField(new DecimalFormat());
    lessThan100Text.setPreferredSize(new Dimension(50, lessThan100Text.getPreferredSize().height));
    lessThan100Text.setHorizontalAlignment(JTextField.RIGHT);
    gbc = gridBagConstraints(1, 1);
    gbc.insets = new Insets(5, 5, 5, 0);
    panel.add(lessThan100Text, gbc);
    lessThan10Text = new JFormattedTextField(new DecimalFormat());
    lessThan10Text.setPreferredSize(new Dimension(50, lessThan10Text.getPreferredSize().height));
    lessThan10Text.setHorizontalAlignment(JTextField.RIGHT);
    gbc = gridBagConstraints(2, 1);
    gbc.insets = new Insets(5, 5, 5, 0);
    panel.add(lessThan10Text, gbc);
    greaterThanText = new JFormattedTextField(new DecimalFormat());
    greaterThanText.setPreferredSize(new Dimension(50, greaterThanText.getPreferredSize().height));
    greaterThanText.setHorizontalAlignment(JTextField.RIGHT);
    gbc = gridBagConstraints(3, 1);
    gbc.insets = new Insets(5, 5, 5, 0);
    panel.add(greaterThanText, gbc);
    makeSmall(pValueLabel, lessThan100, lessThan10, greaterThan, widthLabel, lessThan100Text, lessThan10Text, greaterThanText);
    return panel;
}

Example 87 with JPanel

use of javax.swing.JPanel in project EnrichmentMapApp by BaderLab.

the class EdgeWidthDialog method createGenesetOverlapPanel.

private JPanel createGenesetOverlapPanel() {
    JPanel panel = new JPanel();
    panel.setBorder(LookAndFeelUtil.createTitledBorder("Geneset Overlap"));
    panel.setLayout(new GridBagLayout());
    GridBagConstraints gbc;
    // Similarity Coefficient
    JLabel similarityLabel = new JLabel("Similarity Coefficient:    ");
    gbc = gridBagConstraints(0, 0);
    gbc.weightx = 1.0;
    panel.add(similarityLabel, gbc);
    JLabel lowerBound = new JLabel(String.format("%.1f", similarityCutoff));
    lowerBound.setHorizontalAlignment(JLabel.RIGHT);
    gbc = gridBagConstraints(1, 0);
    panel.add(lowerBound, gbc);
    // hardcoded
    JLabel upperBound = new JLabel("1.0");
    upperBound.setHorizontalAlignment(JLabel.RIGHT);
    gbc = gridBagConstraints(2, 0);
    panel.add(upperBound, gbc);
    JLabel spacer = new JLabel("");
    gbc = gridBagConstraints(3, 0);
    panel.add(spacer, gbc);
    // Width
    JLabel widthLabel = new JLabel("Width:");
    gbc = gridBagConstraints(0, 1);
    panel.add(widthLabel, gbc);
    emLowerWidthText = new JFormattedTextField(new DecimalFormat());
    emLowerWidthText.setPreferredSize(new Dimension(50, emLowerWidthText.getPreferredSize().height));
    emLowerWidthText.setHorizontalAlignment(JTextField.RIGHT);
    gbc = gridBagConstraints(1, 1);
    gbc.insets = new Insets(5, 5, 5, 0);
    panel.add(emLowerWidthText, gbc);
    emUpperWidthText = new JFormattedTextField(new DecimalFormat());
    emUpperWidthText.setPreferredSize(new Dimension(50, emUpperWidthText.getPreferredSize().height));
    emUpperWidthText.setHorizontalAlignment(JTextField.RIGHT);
    gbc = gridBagConstraints(2, 1);
    gbc.insets = new Insets(5, 5, 5, 0);
    panel.add(emUpperWidthText, gbc);
    JLabel mappingText = new JLabel("(continuous mapping) ");
    gbc = gridBagConstraints(3, 1);
    panel.add(mappingText, gbc);
    makeSmall(similarityLabel, lowerBound, upperBound, spacer, widthLabel, emLowerWidthText, emUpperWidthText, mappingText);
    return panel;
}

Example 88 with JPanel

use of javax.swing.JPanel in project EnrichmentMapApp by BaderLab.

the class EdgeWidthDialog method createContents.

private void createContents() {
    JPanel genesetOverlapPanel = createGenesetOverlapPanel();
    JPanel signatureSetPanel = createSignatureSetPanel();
    JPanel widthPanel = new JPanel();
    widthPanel.setLayout(new BoxLayout(widthPanel, BoxLayout.Y_AXIS));
    widthPanel.add(genesetOverlapPanel);
    widthPanel.add(Box.createVerticalStrut(5));
    widthPanel.add(signatureSetPanel);
    JPanel buttonPanel = createButtonPanel();
    JPanel panel = new JPanel();
    final GroupLayout layout = new GroupLayout(panel);
    panel.setLayout(layout);
    layout.setAutoCreateContainerGaps(true);
    layout.setAutoCreateGaps(!LookAndFeelUtil.isAquaLAF());
    layout.setHorizontalGroup(layout.createParallelGroup(Alignment.CENTER, true).addComponent(widthPanel, DEFAULT_SIZE, DEFAULT_SIZE, Short.MAX_VALUE).addComponent(buttonPanel, DEFAULT_SIZE, DEFAULT_SIZE, Short.MAX_VALUE));
    layout.setVerticalGroup(layout.createSequentialGroup().addComponent(widthPanel, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addComponent(buttonPanel, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE));
    add(panel);
}

Example 89 with JPanel

use of javax.swing.JPanel in project EnrichmentMapApp by BaderLab.

the class LegendPanel method updateNodeColorPanel.

private void updateNodeColorPanel(Collection<EMDataSet> dataSets, EnrichmentMap map) {
    JPanel p = getNodeColorPanel();
    p.removeAll();
    if (dataSets != null && dataSets.size() == 1) {
        EMDataSet ds = dataSets.iterator().next();
        ColorLegendPanel clp = new ColorLegendPanel(Colors.MAX_PHENOTYPE_1, Colors.MAX_PHENOTYPE_2, ds.getEnrichments().getPhenotype1(), ds.getEnrichments().getPhenotype2());
        GroupLayout layout = (GroupLayout) p.getLayout();
        layout.setHorizontalGroup(layout.createSequentialGroup().addGap(0, 0, Short.MAX_VALUE).addComponent(clp, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addGap(0, 0, Short.MAX_VALUE));
        layout.setVerticalGroup(layout.createParallelGroup(Alignment.CENTER, false).addComponent(clp));
        p.setVisible(true);
    } else {
        p.setVisible(false);
    }
}

Example 90 with JPanel

use of javax.swing.JPanel in project EnrichmentMapApp by BaderLab.

the class PostAnalysisInputPanel method createContent.

@AfterInjection
private void createContent() {
    JPanel analysisTypePanel = createAnalysisTypePanel();
    JPanel namePanel = createNamePanel();
    final GroupLayout layout = new GroupLayout(this);
    setLayout(layout);
    layout.setAutoCreateContainerGaps(false);
    layout.setAutoCreateGaps(false);
    layout.setHorizontalGroup(layout.createParallelGroup(Alignment.CENTER, true).addComponent(analysisTypePanel, DEFAULT_SIZE, DEFAULT_SIZE, Short.MAX_VALUE).addComponent(namePanel, DEFAULT_SIZE, DEFAULT_SIZE, Short.MAX_VALUE).addComponent(getUserInputScrollPane(), DEFAULT_SIZE, DEFAULT_SIZE, Short.MAX_VALUE));
    layout.setVerticalGroup(layout.createSequentialGroup().addComponent(analysisTypePanel, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addComponent(namePanel, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addComponent(getUserInputScrollPane(), DEFAULT_SIZE, DEFAULT_SIZE, Short.MAX_VALUE));
    if (LookAndFeelUtil.isAquaLAF())
        setOpaque(false);
    initialize();
}