Examples with EtchedBorder javax.swing.border.EtchedBorder used on opensource projects

Example 66 with EtchedBorder

use of javax.swing.border.EtchedBorder in project freeplane by freeplane.

the class AddAttributeAction method getPanel.

/**
 * This method creates the input dialog
 *
 * @return : the input dialog
 */
private JPanel getPanel() {
    final JPanel panel = new JPanel();
    panel.setLayout(new GridBagLayout());
    panel.setBorder(new EtchedBorder());
    final GridBagConstraints gridBagConstraints = new GridBagConstraints();
    gridBagConstraints.gridx = 0;
    gridBagConstraints.gridy = 0;
    gridBagConstraints.anchor = GridBagConstraints.CENTER;
    gridBagConstraints.insets = new Insets(20, 10, 2, 10);
    // Size of JComboBoxes
    final String pattern = "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX";
    final JLabel patternLabel = new JLabel(pattern);
    final Dimension comboBoxMaximumSize = patternLabel.getPreferredSize();
    comboBoxMaximumSize.width += 4;
    comboBoxMaximumSize.height += 10;
    // Label: name
    final JLabel nameLabel = new JLabel(TextUtils.getText("attribute_name"));
    panel.add(nameLabel, gridBagConstraints);
    gridBagConstraints.gridx++;
    // Label: value
    final JLabel valueLabel = new JLabel(TextUtils.getText("attribute_value"));
    panel.add(valueLabel, gridBagConstraints);
    gridBagConstraints.gridx = 0;
    gridBagConstraints.gridy++;
    // Attribute name combo-box
    gridBagConstraints.insets = new Insets(2, 10, 20, 10);
    attributeNames = new JComboBoxWithBorder();
    final MapModel map = Controller.getCurrentController().getMap();
    final AttributeRegistry attributes = AttributeRegistry.getRegistry(map);
    final ComboBoxModel names = attributes.getComboBoxModel();
    attributeNames.setModel(new ClonedComboBoxModel(names));
    attributeNames.setEditable(true);
    attributeNames.setMaximumSize(comboBoxMaximumSize);
    attributeNames.setPreferredSize(comboBoxMaximumSize);
    attributeNames.addItemListener(new ItemListener() {

        public void itemStateChanged(final ItemEvent e) {
            selectedAttributeChanged(e.getItem(), attributeValues);
        }
    });
    panel.add(attributeNames, gridBagConstraints);
    // Attribute value combo-box
    attributeValues = new JComboBoxWithBorder();
    attributeValues.setRenderer(new TypedListCellRenderer());
    attributeValues.setMaximumSize(comboBoxMaximumSize);
    attributeValues.setPreferredSize(comboBoxMaximumSize);
    gridBagConstraints.gridx++;
    panel.add(attributeValues, gridBagConstraints);
    // set focus to attributeNames
    panel.addHierarchyListener(new HierarchyListener() {

        public void hierarchyChanged(HierarchyEvent e) {
            final Component component = e.getComponent();
            if (component.isShowing()) {
                attributeNames.requestFocus();
                component.removeHierarchyListener(this);
            }
        }
    });
    return panel;
}

Example 67 with EtchedBorder

use of javax.swing.border.EtchedBorder in project bacter by tgvaughan.

the class ACGAnnotator method getOptionsGUI.

/**
 * Use a GUI to retrieve ACGAnnotator options.
 *
 * @param options options object to populate using GUI
 * @return true if options successfully collected, false otherwise
 */
private static boolean getOptionsGUI(ACGAnnotatorOptions options) {
    boolean[] canceled = { false };
    JDialog dialog = new JDialog((JDialog) null, true);
    dialog.setDefaultCloseOperation(WindowConstants.DISPOSE_ON_CLOSE);
    dialog.setLocationRelativeTo(null);
    dialog.setTitle("ACGAnnotator");
    JLabel logFileLabel = new JLabel("ACG log file:");
    JLabel outFileLabel = new JLabel("Output file:");
    JLabel burninLabel = new JLabel("Burn-in percentage:");
    JLabel summaryMethodLabel = new JLabel("Position summary method:");
    JLabel thresholdLabel = new JLabel("Posterior conversion support threshold:");
    JCheckBox geneFlowCheckBox = new JCheckBox("Record gene flow");
    JTextField inFilename = new JTextField(20);
    inFilename.setEditable(false);
    JButton inFileButton = new JButton("Choose File");
    JTextField outFilename = new JTextField(20);
    outFilename.setText(options.outFile.getName());
    outFilename.setEditable(false);
    JButton outFileButton = new JButton("Choose File");
    JTextField gfOutFilename = new JTextField(20);
    gfOutFilename.setText(options.geneFlowOutFile.getName());
    gfOutFilename.setEditable(false);
    gfOutFilename.setEnabled(false);
    JButton gfOutFileButton = new JButton("Choose File");
    gfOutFileButton.setEnabled(false);
    JSlider burninSlider = new JSlider(JSlider.HORIZONTAL, 0, 100, (int) (options.burninPercentage));
    burninSlider.setMajorTickSpacing(50);
    burninSlider.setMinorTickSpacing(10);
    burninSlider.setPaintTicks(true);
    burninSlider.setPaintLabels(true);
    burninSlider.setSnapToTicks(true);
    JComboBox<SummaryStrategy> heightMethodCombo = new JComboBox<>(SummaryStrategy.values());
    JSlider thresholdSlider = new JSlider(JSlider.HORIZONTAL, 0, 100, (int) (options.convSupportThresh));
    thresholdSlider.setMajorTickSpacing(50);
    thresholdSlider.setMinorTickSpacing(10);
    thresholdSlider.setPaintTicks(true);
    thresholdSlider.setPaintLabels(true);
    thresholdSlider.setSnapToTicks(true);
    Container cp = dialog.getContentPane();
    BoxLayout boxLayout = new BoxLayout(cp, BoxLayout.PAGE_AXIS);
    cp.setLayout(boxLayout);
    JPanel mainPanel = new JPanel();
    GroupLayout layout = new GroupLayout(mainPanel);
    mainPanel.setLayout(layout);
    layout.setAutoCreateGaps(true);
    layout.setAutoCreateContainerGaps(true);
    layout.setHorizontalGroup(layout.createSequentialGroup().addGroup(layout.createParallelGroup().addComponent(logFileLabel).addComponent(outFileLabel).addComponent(burninLabel).addComponent(summaryMethodLabel).addComponent(thresholdLabel).addComponent(geneFlowCheckBox)).addGroup(layout.createParallelGroup(GroupLayout.Alignment.LEADING, false).addComponent(inFilename).addComponent(outFilename).addComponent(burninSlider).addComponent(heightMethodCombo).addComponent(thresholdSlider).addComponent(gfOutFilename)).addGroup(layout.createParallelGroup(GroupLayout.Alignment.LEADING, false).addComponent(inFileButton).addComponent(outFileButton).addComponent(gfOutFileButton)));
    layout.setVerticalGroup(layout.createSequentialGroup().addGroup(layout.createParallelGroup().addComponent(logFileLabel).addComponent(inFilename, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE).addComponent(inFileButton)).addGroup(layout.createParallelGroup().addComponent(outFileLabel).addComponent(outFilename, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE).addComponent(outFileButton)).addGroup(layout.createParallelGroup().addComponent(burninLabel).addComponent(burninSlider, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE)).addGroup(layout.createParallelGroup().addComponent(summaryMethodLabel).addComponent(heightMethodCombo, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE)).addGroup(layout.createParallelGroup().addComponent(thresholdLabel).addComponent(thresholdSlider, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE)).addGroup(layout.createParallelGroup().addComponent(geneFlowCheckBox).addComponent(gfOutFilename).addComponent(gfOutFileButton)));
    mainPanel.setBorder(new EtchedBorder());
    cp.add(mainPanel);
    JPanel buttonPanel = new JPanel();
    JButton runButton = new JButton("Analyze");
    runButton.addActionListener((e) -> {
        options.burninPercentage = burninSlider.getValue();
        options.convSupportThresh = thresholdSlider.getValue();
        options.summaryStrategy = (SummaryStrategy) heightMethodCombo.getSelectedItem();
        options.recordGeneFlow = geneFlowCheckBox.isSelected();
        dialog.setVisible(false);
    });
    runButton.setEnabled(false);
    buttonPanel.add(runButton);
    JButton cancelButton = new JButton("Quit");
    cancelButton.addActionListener((e) -> {
        dialog.setVisible(false);
        canceled[0] = true;
    });
    buttonPanel.add(cancelButton);
    JFileChooser inFileChooser = new JFileChooser();
    inFileButton.addActionListener(e -> {
        inFileChooser.setDialogTitle("Select ACG log file to summarize");
        if (options.inFile == null)
            inFileChooser.setCurrentDirectory(new File(System.getProperty("user.dir")));
        int returnVal = inFileChooser.showOpenDialog(dialog);
        if (returnVal == JFileChooser.APPROVE_OPTION) {
            options.inFile = inFileChooser.getSelectedFile();
            inFilename.setText(inFileChooser.getSelectedFile().getName());
            runButton.setEnabled(true);
        }
    });
    JFileChooser outFileChooser = new JFileChooser();
    outFileButton.addActionListener(e -> {
        outFileChooser.setDialogTitle("Select output file name.");
        if (options.inFile != null)
            outFileChooser.setCurrentDirectory(options.inFile);
        else
            outFileChooser.setCurrentDirectory(new File(System.getProperty("user.dir")));
        outFileChooser.setSelectedFile(options.outFile);
        int returnVal = outFileChooser.showOpenDialog(dialog);
        if (returnVal == JFileChooser.APPROVE_OPTION) {
            options.outFile = outFileChooser.getSelectedFile();
            outFilename.setText(outFileChooser.getSelectedFile().getName());
        }
    });
    geneFlowCheckBox.addActionListener(e -> {
        boolean newValue = geneFlowCheckBox.isSelected();
        gfOutFilename.setEnabled(newValue);
        gfOutFileButton.setEnabled(newValue);
    });
    JFileChooser gfOutFileChooser = new JFileChooser();
    gfOutFileButton.addActionListener(e -> {
        gfOutFileChooser.setDialogTitle("Select gene flow output file name.");
        if (options.inFile != null)
            gfOutFileChooser.setCurrentDirectory(options.inFile);
        else
            gfOutFileChooser.setCurrentDirectory(new File(System.getProperty("user.dir")));
        gfOutFileChooser.setSelectedFile(options.geneFlowOutFile);
        int returnVal = gfOutFileChooser.showOpenDialog(dialog);
        if (returnVal == JFileChooser.APPROVE_OPTION) {
            options.geneFlowOutFile = gfOutFileChooser.getSelectedFile();
            gfOutFilename.setText(gfOutFileChooser.getSelectedFile().getName());
        }
    });
    cp.add(buttonPanel);
    dialog.pack();
    dialog.setResizable(false);
    dialog.setVisible(true);
    return !canceled[0];
}

Example 68 with EtchedBorder

use of javax.swing.border.EtchedBorder in project MultiTypeTree by tgvaughan.

the class MigrationModelInputEditor method init.

@Override
public void init(Input<?> input, BEASTInterface beastObject, int itemNr, ExpandOption bExpandOption, boolean bAddButtons) {
    // Set up fields
    m_bAddButtons = bAddButtons;
    m_input = input;
    m_beastObject = beastObject;
    this.itemNr = itemNr;
    // Adds label to left of input editor
    addInputLabel();
    // Create component models and fill them with data from input
    migModel = (SCMigrationModel) input.get();
    fullTypeListModel = new DefaultListModel<>();
    additionalTypeListModel = new DefaultListModel<>();
    popSizeModel = new DefaultTableModel();
    rateMatrixModel = new DefaultTableModel() {

        @Override
        public boolean isCellEditable(int row, int column) {
            return row != column && column != migModel.getNTypes();
        }
    };
    popSizeEstCheckBox = new JCheckBox("estimate pop. sizes");
    rateMatrixEstCheckBox = new JCheckBox("estimate mig. rates");
    popSizeScaleFactorEstCheckBox = new JCheckBox("estimate scale factor");
    rateMatrixScaleFactorEstCheckBox = new JCheckBox("estimate scale factor");
    loadFromMigrationModel();
    JPanel panel = new JPanel(new GridBagLayout());
    panel.setBorder(new EtchedBorder());
    GridBagConstraints c = new GridBagConstraints();
    c.insets = new Insets(3, 3, 3, 3);
    c.weighty = 0.5;
    // Type list:
    c.gridx = 0;
    c.gridy = 0;
    c.weightx = 0.0;
    c.anchor = GridBagConstraints.LINE_END;
    panel.add(new JLabel("<html><body>Type list:</body></html>"), c);
    JList<String> jlist;
    Box tlBox = Box.createHorizontalBox();
    Box tlBoxLeft = Box.createVerticalBox();
    JLabel labelLeft = new JLabel("All types");
    tlBoxLeft.add(labelLeft);
    jlist = new JList<>(fullTypeListModel);
    jlist.setSelectionModel(new DefaultListSelectionModel() {

        @Override
        public void setSelectionInterval(int index0, int index1) {
            super.setSelectionInterval(-1, -1);
        }
    });
    JScrollPane listScrollPane = new JScrollPane(jlist);
    listScrollPane.setVerticalScrollBarPolicy(ScrollPaneConstants.VERTICAL_SCROLLBAR_ALWAYS);
    tlBoxLeft.add(listScrollPane);
    tlBox.add(tlBoxLeft);
    Box tlBoxRight = Box.createVerticalBox();
    JLabel labelRight = new JLabel("Additional types");
    tlBoxRight.add(labelRight);
    jlist = new JList<>(additionalTypeListModel);
    additionalTypeListSelectionModel = jlist.getSelectionModel();
    listScrollPane = new JScrollPane(jlist);
    listScrollPane.setVerticalScrollBarPolicy(ScrollPaneConstants.VERTICAL_SCROLLBAR_ALWAYS);
    tlBoxRight.add(listScrollPane);
    Box addRemBox = Box.createHorizontalBox();
    addTypeButton = new JButton("+");
    remTypeButton = new JButton("-");
    remTypeButton.setEnabled(false);
    addTypesFromFileButton = new JButton("Add from file...");
    addRemBox.add(addTypeButton);
    addRemBox.add(remTypeButton);
    addRemBox.add(addTypesFromFileButton);
    tlBoxRight.add(addRemBox);
    tlBox.add(tlBoxRight);
    c.gridx = 1;
    c.gridy = 0;
    c.weightx = 1.0;
    c.anchor = GridBagConstraints.LINE_START;
    panel.add(tlBox, c);
    // Population size table
    c.gridx = 0;
    c.gridy = 1;
    c.weightx = 0.0;
    c.anchor = GridBagConstraints.LINE_END;
    Box psBox = Box.createVerticalBox();
    psBox.add(new JLabel("Population sizes: "), c);
    loadPopSizesFromFileButton = new JButton("Load from file...");
    psBox.add(loadPopSizesFromFileButton);
    panel.add(psBox, c);
    JTable popSizeTable = new JTable(popSizeModel) {

        @Override
        public TableCellRenderer getCellRenderer(int row, int column) {
            return new DefaultTableCellRenderer() {

                @Override
                public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                    setHorizontalAlignment(SwingConstants.CENTER);
                    return super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                }
            };
        }
    };
    popSizeTable.setShowVerticalLines(true);
    popSizeTable.setCellSelectionEnabled(true);
    popSizeTable.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
    popSizeTable.setMaximumSize(new Dimension(100, Short.MAX_VALUE));
    c.gridx = 1;
    c.gridy = 1;
    c.weightx = 1.0;
    c.anchor = GridBagConstraints.LINE_START;
    panel.add(popSizeTable, c);
    popSizeEstCheckBox.setSelected(((RealParameter) migModel.popSizesInput.get()).isEstimatedInput.get());
    popSizeScaleFactorEstCheckBox.setSelected(((RealParameter) migModel.popSizesScaleFactorInput.get()).isEstimatedInput.get());
    c.gridx = 2;
    c.gridy = 1;
    c.anchor = GridBagConstraints.LINE_END;
    c.weightx = 1.0;
    Box estBox = Box.createVerticalBox();
    estBox.add(popSizeEstCheckBox);
    estBox.add(popSizeScaleFactorEstCheckBox);
    panel.add(estBox, c);
    // Migration rate table
    // (Uses custom cell renderer to grey out diagonal elements.)
    c.gridx = 0;
    c.gridy = 2;
    c.weightx = 0.0;
    c.anchor = GridBagConstraints.LINE_END;
    Box mrBox = Box.createVerticalBox();
    mrBox.add(new JLabel("Migration rates: "), c);
    loadMigRatesFromFileButton = new JButton("Load from file...");
    mrBox.add(loadMigRatesFromFileButton);
    panel.add(mrBox, c);
    JTable rateMatrixTable = new JTable(rateMatrixModel) {

        @Override
        public TableCellRenderer getCellRenderer(int row, int column) {
            return new DefaultTableCellRenderer() {

                @Override
                public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                    if (row == column) {
                        JLabel label = new JLabel();
                        label.setOpaque(true);
                        label.setBackground(Color.GRAY);
                        return label;
                    } else {
                        Component c = super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                        if (column == migModel.getNTypes()) {
                            c.setBackground(panel.getBackground());
                            c.setForeground(Color.gray);
                            setHorizontalAlignment(SwingConstants.LEFT);
                        } else {
                            int l = 1, r = 1, t = 1, b = 1;
                            if (column > 0)
                                l = 0;
                            if (row > 0)
                                t = 0;
                            setBorder(BorderFactory.createMatteBorder(t, l, b, r, Color.GRAY));
                            setHorizontalAlignment(SwingConstants.CENTER);
                        }
                        return c;
                    }
                }
            };
        }
    };
    rateMatrixTable.setShowGrid(false);
    rateMatrixTable.setIntercellSpacing(new Dimension(0, 0));
    rateMatrixTable.setCellSelectionEnabled(true);
    rateMatrixTable.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
    rateMatrixTable.setAutoResizeMode(JTable.AUTO_RESIZE_OFF);
    TableColumn col = rateMatrixTable.getColumnModel().getColumn(migModel.getNTypes());
    FontMetrics metrics = new Canvas().getFontMetrics(getFont());
    int maxWidth = 0;
    for (String rowName : rowNames) maxWidth = Math.max(maxWidth, metrics.stringWidth(rowName + "M"));
    col.setPreferredWidth(maxWidth);
    c.gridx = 1;
    c.gridy = 2;
    c.anchor = GridBagConstraints.LINE_START;
    c.weightx = 1.0;
    panel.add(rateMatrixTable, c);
    rateMatrixEstCheckBox.setSelected(((RealParameter) migModel.rateMatrixInput.get()).isEstimatedInput.get());
    rateMatrixScaleFactorEstCheckBox.setSelected(((RealParameter) migModel.rateMatrixScaleFactorInput.get()).isEstimatedInput.get());
    c.gridx = 2;
    c.gridy = 2;
    c.anchor = GridBagConstraints.LINE_END;
    c.weightx = 1.0;
    estBox = Box.createVerticalBox();
    estBox.add(rateMatrixEstCheckBox);
    estBox.add(rateMatrixScaleFactorEstCheckBox);
    panel.add(estBox, c);
    c.gridx = 1;
    c.gridy = 3;
    c.anchor = GridBagConstraints.LINE_START;
    c.weightx = 1.0;
    panel.add(new JLabel("Rows: sources, columns: sinks (backwards in time)"), c);
    c.gridx = 1;
    c.gridy = 4;
    c.anchor = GridBagConstraints.LINE_START;
    c.weightx = 1.0;
    JLabel multilineLabel = new JLabel();
    multilineLabel.setText("<html><body>Correspondence between row/col indices<br>" + "and deme names shown to right of matrix.</body></html>");
    panel.add(multilineLabel, c);
    add(panel);
    // Event handlers
    popSizeModel.addTableModelListener(e -> {
        if (e.getType() != TableModelEvent.UPDATE)
            return;
        if (!fileLoadInProgress)
            saveToMigrationModel();
    });
    popSizeEstCheckBox.addItemListener(e -> saveToMigrationModel());
    popSizeScaleFactorEstCheckBox.addItemListener(e -> saveToMigrationModel());
    rateMatrixModel.addTableModelListener(e -> {
        if (e.getType() != TableModelEvent.UPDATE)
            return;
        if (!fileLoadInProgress)
            saveToMigrationModel();
    });
    rateMatrixEstCheckBox.addItemListener(e -> saveToMigrationModel());
    rateMatrixScaleFactorEstCheckBox.addItemListener(e -> saveToMigrationModel());
    addTypeButton.addActionListener(e -> {
        String newTypeName = JOptionPane.showInputDialog("Name of type");
        if (newTypeName != null) {
            if (migModel.getTypeSet().containsTypeWithName(newTypeName)) {
                JOptionPane.showMessageDialog(panel, "Type with this name already present.", "Error", JOptionPane.ERROR_MESSAGE);
            } else {
                additionalTypeListModel.add(additionalTypeListModel.size(), newTypeName);
                saveToMigrationModel();
            }
        }
    });
    addTypesFromFileButton.addActionListener(e -> {
        JFileChooser fc = new JFileChooser();
        fc.setDialogTitle("Choose file containing type names (one per line)");
        fc.setFileSelectionMode(JFileChooser.FILES_ONLY);
        fc.setMultiSelectionEnabled(false);
        int result = fc.showDialog(panel, "Load");
        if (result == JFileChooser.APPROVE_OPTION) {
            File file = fc.getSelectedFile();
            try {
                BufferedReader reader = new BufferedReader(new InputStreamReader(new FileInputStream(file)));
                String line;
                while ((line = reader.readLine()) != null) {
                    line = line.trim();
                    if (!line.isEmpty())
                        additionalTypeListModel.add(additionalTypeListModel.size(), line);
                }
                saveToMigrationModel();
            } catch (IOException e1) {
                JOptionPane.showMessageDialog(panel, "Error reading from file: " + e1.getMessage(), "Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });
    additionalTypeListSelectionModel.addListSelectionListener(e -> {
        if (additionalTypeListSelectionModel.getMinSelectionIndex() < 0)
            remTypeButton.setEnabled(false);
        else
            remTypeButton.setEnabled(true);
    });
    remTypeButton.addActionListener(e -> {
        int selectionMin = additionalTypeListSelectionModel.getMinSelectionIndex();
        int selectionMax = additionalTypeListSelectionModel.getMaxSelectionIndex();
        additionalTypeListModel.removeRange(selectionMin, selectionMax);
        additionalTypeListSelectionModel.clearSelection();
        saveToMigrationModel();
    });
    loadPopSizesFromFileButton.addActionListener(e -> {
        JFileChooser fc = new JFileChooser();
        fc.setDialogTitle("Choose file containing population sizes (one per line)");
        fc.setFileSelectionMode(JFileChooser.FILES_ONLY);
        fc.setMultiSelectionEnabled(false);
        int result = fc.showDialog(panel, "Load");
        if (result == JFileChooser.APPROVE_OPTION) {
            File file = fc.getSelectedFile();
            try {
                BufferedReader reader = new BufferedReader(new InputStreamReader(new FileInputStream(file)));
                List<Double> popSizes = new ArrayList<>();
                String line;
                while ((line = reader.readLine()) != null) {
                    line = line.trim();
                    if (!line.isEmpty())
                        popSizes.add(Double.parseDouble(line));
                }
                if (popSizes.size() == migModel.getNTypes()) {
                    fileLoadInProgress = true;
                    for (int i = 0; i < popSizes.size(); i++) popSizeModel.setValueAt(popSizes.get(i), 0, i);
                    fileLoadInProgress = false;
                    saveToMigrationModel();
                } else {
                    JOptionPane.showMessageDialog(panel, "<html>File must contain exactly one population<br> size for each type/deme.</html>", "Error", JOptionPane.ERROR_MESSAGE);
                }
            } catch (IOException ex) {
                JOptionPane.showMessageDialog(panel, "Error reading from file: " + ex.getMessage(), "Error", JOptionPane.ERROR_MESSAGE);
            } catch (NumberFormatException ex) {
                JOptionPane.showMessageDialog(panel, "<html>File contains non-numeric line. " + "Every line must contain<br> exactly one population size.</html>", "Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });
    loadMigRatesFromFileButton.addActionListener(e -> {
        JFileChooser fc = new JFileChooser();
        fc.setDialogTitle("Choose CSV file containing migration rate matrix (diagonal ignored)");
        fc.setFileSelectionMode(JFileChooser.FILES_ONLY);
        fc.setMultiSelectionEnabled(false);
        int result = fc.showDialog(panel, "Load");
        if (result == JFileChooser.APPROVE_OPTION) {
            File file = fc.getSelectedFile();
            try {
                BufferedReader reader = new BufferedReader(new InputStreamReader(new FileInputStream(file)));
                List<Double> migRates = new ArrayList<>();
                String line;
                while ((line = reader.readLine()) != null) {
                    line = line.trim();
                    for (String field : line.split(",")) {
                        if (!field.isEmpty())
                            migRates.add(Double.parseDouble(field));
                    }
                }
                boolean diagonalsPresent = (migRates.size() == migModel.getNTypes() * migModel.getNTypes());
                if (diagonalsPresent || migRates.size() == migModel.getNTypes() * (migModel.getNTypes() - 1)) {
                    fileLoadInProgress = true;
                    for (int i = 0; i < migModel.getNTypes(); i++) {
                        for (int j = 0; j < migModel.getNTypes(); j++) {
                            if (i == j)
                                continue;
                            int offset;
                            if (diagonalsPresent)
                                offset = i * migModel.getNTypes() + j;
                            else {
                                offset = i * (migModel.getNTypes() - 1) + j;
                                if (j > i)
                                    offset -= 1;
                            }
                            rateMatrixModel.setValueAt(migRates.get(offset), i, j);
                        }
                    }
                    fileLoadInProgress = false;
                    saveToMigrationModel();
                } else {
                    JOptionPane.showMessageDialog(panel, "<html>CSV file must contain a square matrix with exactly one<br>" + "row for each type/deme.</html>", "Error", JOptionPane.ERROR_MESSAGE);
                }
            } catch (IOException ex) {
                JOptionPane.showMessageDialog(panel, "Error reading from file: " + ex.getMessage(), "Error", JOptionPane.ERROR_MESSAGE);
            } catch (NumberFormatException ex) {
                JOptionPane.showMessageDialog(panel, "<html>CSV file contains non-numeric element.</html", "Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });
}

Example 69 with EtchedBorder

use of javax.swing.border.EtchedBorder in project beast2 by CompEvol.

the class TaxonSetDialog method createCancelOKButtons.

// createTaxonSelector
Component createCancelOKButtons() {
    Box cancelOkBox = Box.createHorizontalBox();
    cancelOkBox.setBorder(new EtchedBorder());
    JButton okButton = new JButton("Ok");
    okButton.setName("OK");
    okButton.addActionListener(e -> {
        taxonSet.setID(id);
        List<Taxon> taxa = taxonSet.taxonsetInput.get();
        while (taxa.size() > 0) {
            taxa.remove(0);
        }
        for (int i = 0; i < listModel2.size(); i++) {
            taxa.add(listModel2.get(i));
        }
        isOK = true;
        dispose();
    });
    JButton cancelButton = new JButton("Cancel");
    cancelButton.setName("Cancel");
    cancelButton.addActionListener(e -> {
        dispose();
    });
    cancelOkBox.add(Box.createHorizontalGlue());
    cancelOkBox.add(okButton);
    cancelOkBox.add(Box.createHorizontalGlue());
    cancelOkBox.add(cancelButton);
    cancelOkBox.add(Box.createHorizontalGlue());
    return cancelOkBox;
}

Example 70 with EtchedBorder

use of javax.swing.border.EtchedBorder in project GenericKnimeNodes by genericworkflownodes.

the class ParameterDialog method createHeader.

private void createHeader() {
    // use JPanel to be able to create a border
    headerpanel = new JPanel();
    headerpanel.setLayout(new BorderLayout());
    TitledBorder b = new TitledBorder(new EtchedBorder(), "Please cite:");
    b.setTitleFont(MAND_FONT);
    headerpanel.setBorder(b);
    headerpanel.setPreferredSize(new Dimension(table.getWidth(), 50));
    // fill the Panel with a non-editable HTML TextPane
    header = new JTextPane();
    header.setContentType("text/html");
    header.setEditable(false);
    header.addHyperlinkListener(new HyperlinkListener() {

        // Open Desktop browser when clicking links (e.g. dois)
        public void hyperlinkUpdate(HyperlinkEvent e) {
            if (e.getEventType() == HyperlinkEvent.EventType.ACTIVATED) {
                if (Desktop.isDesktopSupported()) {
                    try {
                        Desktop.getDesktop().browse(e.getURL().toURI());
                    } catch (IOException e1) {
                        // TODO Auto-generated catch block
                        e1.printStackTrace();
                    } catch (URISyntaxException e1) {
                        // TODO Auto-generated catch block
                        e1.printStackTrace();
                    }
                }
            }
        }
    });
    headerpanel.add(new JScrollPane(header));
}