Examples with DefaultTableModel javax.swing.table.DefaultTableModel used on opensource projects

Example 61 with DefaultTableModel

use of javax.swing.table.DefaultTableModel in project MassBank-web by MassBank.

the class SearchPage method createWindow.

/**
 * �E�C���h�E����
 */
private void createWindow() {
    // �c�[���`�b�v�}�l�[�W���[�ݒ�
    ToolTipManager ttm = ToolTipManager.sharedInstance();
    ttm.setInitialDelay(50);
    ttm.setDismissDelay(8000);
    // Search�p�l��
    JPanel mainPanel = new JPanel();
    mainPanel.setLayout(new BorderLayout());
    Border border = BorderFactory.createCompoundBorder(BorderFactory.createEtchedBorder(), new EmptyBorder(1, 1, 1, 1));
    mainPanel.setBorder(border);
    // *********************************************************************
    // User File Query�^�u
    // *********************************************************************
    DefaultTableModel fileDm = new DefaultTableModel();
    fileSorter = new TableSorter(fileDm, TABLE_QUERY_FILE);
    queryFileTable = new JTable(fileSorter) {

        @Override
        public boolean isCellEditable(int row, int column) {
            // �I�[�o�[���C�h�ŃZ���ҏW��s�‚Ƃ���
            return false;
        }
    };
    queryFileTable.addMouseListener(new TblMouseListener());
    fileSorter.setTableHeader(queryFileTable.getTableHeader());
    queryFileTable.setRowSelectionAllowed(true);
    queryFileTable.setColumnSelectionAllowed(false);
    queryFileTable.setAutoResizeMode(JTable.AUTO_RESIZE_OFF);
    String[] col = { COL_LABEL_NO, COL_LABEL_NAME, COL_LABEL_ID };
    ((DefaultTableModel) fileSorter.getTableModel()).setColumnIdentifiers(col);
    (queryFileTable.getColumn(queryFileTable.getColumnName(0))).setPreferredWidth(44);
    (queryFileTable.getColumn(queryFileTable.getColumnName(1))).setPreferredWidth(LEFT_PANEL_WIDTH - 44);
    (queryFileTable.getColumn(queryFileTable.getColumnName(2))).setPreferredWidth(70);
    ListSelectionModel lm = queryFileTable.getSelectionModel();
    lm.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
    lm.addListSelectionListener(new LmFileListener());
    queryFilePane = new JScrollPane(queryFileTable);
    queryFilePane.addMouseListener(new PaneMouseListener());
    queryFilePane.setPreferredSize(new Dimension(300, 300));
    // *********************************************************************
    // Result�^�u
    // *********************************************************************
    DefaultTableModel resultDm = new DefaultTableModel();
    resultSorter = new TableSorter(resultDm, TABLE_RESULT);
    resultTable = new JTable(resultSorter) {

        @Override
        public String getToolTipText(MouseEvent me) {
            // super.getToolTipText(me);
            // �I�[�o�[���C�h�Ńc�[���`�b�v�̕������Ԃ�
            Point pt = me.getPoint();
            int row = rowAtPoint(pt);
            if (row < 0) {
                return null;
            } else {
                int nameCol = getColumnModel().getColumnIndex(COL_LABEL_NAME);
                return " " + getValueAt(row, nameCol) + " ";
            }
        }

        @Override
        public boolean isCellEditable(int row, int column) {
            // �I�[�o�[���C�h�ŃZ���ҏW��s�‚Ƃ���
            return false;
        }
    };
    resultTable.addMouseListener(new TblMouseListener());
    resultSorter.setTableHeader(resultTable.getTableHeader());
    JPanel dbPanel = new JPanel();
    dbPanel.setLayout(new BorderLayout());
    resultPane = new JScrollPane(resultTable);
    resultPane.addMouseListener(new PaneMouseListener());
    resultTable.setRowSelectionAllowed(true);
    resultTable.setColumnSelectionAllowed(false);
    resultTable.setAutoResizeMode(JTable.AUTO_RESIZE_OFF);
    String[] col2 = { COL_LABEL_NAME, COL_LABEL_SCORE, COL_LABEL_HIT, COL_LABEL_ID, COL_LABEL_ION, COL_LABEL_CONTRIBUTOR, COL_LABEL_NO };
    resultDm.setColumnIdentifiers(col2);
    (resultTable.getColumn(resultTable.getColumnName(0))).setPreferredWidth(LEFT_PANEL_WIDTH - 180);
    (resultTable.getColumn(resultTable.getColumnName(1))).setPreferredWidth(70);
    (resultTable.getColumn(resultTable.getColumnName(2))).setPreferredWidth(20);
    (resultTable.getColumn(resultTable.getColumnName(3))).setPreferredWidth(70);
    (resultTable.getColumn(resultTable.getColumnName(4))).setPreferredWidth(20);
    (resultTable.getColumn(resultTable.getColumnName(5))).setPreferredWidth(70);
    (resultTable.getColumn(resultTable.getColumnName(6))).setPreferredWidth(50);
    ListSelectionModel lm2 = resultTable.getSelectionModel();
    lm2.addListSelectionListener(new LmResultListener());
    resultPane.setPreferredSize(new Dimension(LEFT_PANEL_WIDTH, 200));
    dbPanel.add(resultPane, BorderLayout.CENTER);
    // *********************************************************************
    // DB Query�^�u
    // *********************************************************************
    DefaultTableModel dbDm = new DefaultTableModel();
    querySorter = new TableSorter(dbDm, TABLE_QUERY_DB);
    queryDbTable = new JTable(querySorter) {

        @Override
        public boolean isCellEditable(int row, int column) {
            // �I�[�o�[���C�h�ŃZ���ҏW��s�‚Ƃ���
            return false;
        }
    };
    queryDbTable.addMouseListener(new TblMouseListener());
    querySorter.setTableHeader(queryDbTable.getTableHeader());
    queryDbPane = new JScrollPane(queryDbTable);
    queryDbPane.addMouseListener(new PaneMouseListener());
    int h = (int) Toolkit.getDefaultToolkit().getScreenSize().getHeight();
    queryDbPane.setPreferredSize(new Dimension(LEFT_PANEL_WIDTH, h));
    queryDbTable.setRowSelectionAllowed(true);
    queryDbTable.setColumnSelectionAllowed(false);
    queryDbTable.setAutoResizeMode(JTable.AUTO_RESIZE_OFF);
    String[] col3 = { COL_LABEL_ID, COL_LABEL_NAME, COL_LABEL_CONTRIBUTOR, COL_LABEL_NO };
    DefaultTableModel model = (DefaultTableModel) querySorter.getTableModel();
    model.setColumnIdentifiers(col3);
    // �񕝃Z�b�g
    queryDbTable.getColumn(queryDbTable.getColumnName(0)).setPreferredWidth(70);
    queryDbTable.getColumn(queryDbTable.getColumnName(1)).setPreferredWidth(LEFT_PANEL_WIDTH - 70);
    queryDbTable.getColumn(queryDbTable.getColumnName(2)).setPreferredWidth(70);
    queryDbTable.getColumn(queryDbTable.getColumnName(3)).setPreferredWidth(50);
    ListSelectionModel lm3 = queryDbTable.getSelectionModel();
    lm3.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
    lm3.addListSelectionListener(new LmQueryDbListener());
    // �{�^���p�l��
    JPanel btnPanel = new JPanel();
    btnName.addActionListener(new BtnSearchNameListener());
    btnAll.addActionListener(new BtnAllListener());
    btnPanel.add(btnName);
    btnPanel.add(btnAll);
    parentPanel2 = new JPanel();
    parentPanel2.setLayout(new BoxLayout(parentPanel2, BoxLayout.PAGE_AXIS));
    parentPanel2.add(btnPanel);
    parentPanel2.add(queryDbPane);
    // �I�v�V�����p�l��
    JPanel dispModePanel = new JPanel();
    isDispSelected = dispSelected.isSelected();
    isDispRelated = dispRelated.isSelected();
    if (isDispSelected) {
        resultTable.getSelectionModel().setSelectionMode(ListSelectionModel.MULTIPLE_INTERVAL_SELECTION);
    } else if (isDispRelated) {
        resultTable.getSelectionModel().setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
    }
    Object[] retRadio = new Object[] { dispSelected, dispRelated };
    for (int i = 0; i < retRadio.length; i++) {
        ((JRadioButton) retRadio[i]).addActionListener(new ActionListener() {

            public void actionPerformed(ActionEvent arg0) {
                if (isDispSelected != dispSelected.isSelected() || isDispRelated != dispRelated.isSelected()) {
                    isDispSelected = dispSelected.isSelected();
                    isDispRelated = dispRelated.isSelected();
                    // ���ʃ��R�[�h�I����Ԃ�����
                    resultTable.clearSelection();
                    resultPlot.clear();
                    compPlot.setPeaks(null, 1);
                    resultPlot.setPeaks(null, 0);
                    setAllPlotAreaRange();
                    pkgView.initResultRecInfo();
                    if (isDispSelected) {
                        resultTable.getSelectionModel().setSelectionMode(ListSelectionModel.MULTIPLE_INTERVAL_SELECTION);
                    } else if (isDispRelated) {
                        resultTable.getSelectionModel().setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
                    }
                }
            }
        });
    }
    ButtonGroup disGroup = new ButtonGroup();
    disGroup.add(dispSelected);
    disGroup.add(dispRelated);
    dispModePanel.add(lbl2);
    dispModePanel.add(dispSelected);
    dispModePanel.add(dispRelated);
    JPanel paramPanel = new JPanel();
    paramPanel.add(etcPropertyButton);
    etcPropertyButton.setMargin(new Insets(0, 10, 0, 10));
    etcPropertyButton.addActionListener(new ActionListener() {

        private ParameterSetWindow ps = null;

        public void actionPerformed(ActionEvent e) {
            // �q��ʂ��J���Ă��Ȃ���ΐ���
            if (!isSubWindow) {
                ps = new ParameterSetWindow();
            } else {
                ps.requestFocus();
            }
        }
    });
    JPanel optionPanel = new JPanel();
    optionPanel.setLayout(new BoxLayout(optionPanel, BoxLayout.Y_AXIS));
    optionPanel.add(dispModePanel);
    optionPanel.add(paramPanel);
    // PackageView�����y�сA������
    pkgView = new PackageViewPanel();
    pkgView.initAllRecInfo();
    queryTabPane.addTab("DB", parentPanel2);
    queryTabPane.setToolTipTextAt(TAB_ORDER_DB, "Query from DB.");
    queryTabPane.addTab("File", queryFilePane);
    queryTabPane.setToolTipTextAt(TAB_ORDER_FILE, "Query from user file.");
    queryTabPane.setSelectedIndex(TAB_ORDER_DB);
    queryTabPane.setFocusable(false);
    queryTabPane.addChangeListener(new ChangeListener() {

        public void stateChanged(ChangeEvent e) {
            // �v���b�g�y�C��������
            queryPlot.clear();
            compPlot.clear();
            resultPlot.clear();
            queryPlot.setPeaks(null, 0);
            compPlot.setPeaks(null, 1);
            resultPlot.setPeaks(null, 0);
            // PackageView������
            pkgView.initAllRecInfo();
            // DB Hit�^�u�֘A������
            if (resultTabPane.getTabCount() > 0) {
                resultTabPane.setSelectedIndex(0);
            }
            DefaultTableModel dataModel = (DefaultTableModel) resultSorter.getTableModel();
            dataModel.setRowCount(0);
            hitLabel.setText(" ");
            // DB�^�u�AUser File�^�u�̑I���ς݃��R�[�h���f����
            queryTabPane.update(queryTabPane.getGraphics());
            if (queryTabPane.getSelectedIndex() == TAB_ORDER_DB) {
                parentPanel2.update(parentPanel2.getGraphics());
                updateSelectQueryTable(queryDbTable);
            } else if (queryTabPane.getSelectedIndex() == TAB_ORDER_FILE) {
                queryFilePane.update(queryFilePane.getGraphics());
                updateSelectQueryTable(queryFileTable);
            }
        }
    });
    // ���C�A�E�g
    JPanel queryPanel = new JPanel();
    queryPanel.setLayout(new BorderLayout());
    queryPanel.add(queryTabPane, BorderLayout.CENTER);
    queryPanel.add(optionPanel, BorderLayout.SOUTH);
    queryPanel.setMinimumSize(new Dimension(0, 170));
    JPanel jtp2Panel = new JPanel();
    jtp2Panel.setLayout(new BorderLayout());
    jtp2Panel.add(dbPanel, BorderLayout.CENTER);
    jtp2Panel.add(hitLabel, BorderLayout.SOUTH);
    jtp2Panel.setMinimumSize(new Dimension(0, 70));
    Color colorGreen = new Color(0, 128, 0);
    hitLabel.setForeground(colorGreen);
    resultTabPane.addTab("Result", jtp2Panel);
    resultTabPane.setToolTipTextAt(TAB_RESULT_DB, "Result of DB hit.");
    resultTabPane.setFocusable(false);
    queryPlot.setMinimumSize(new Dimension(0, 100));
    compPlot.setMinimumSize(new Dimension(0, 120));
    resultPlot.setMinimumSize(new Dimension(0, 100));
    int height = initAppletHight / 3;
    JSplitPane jsp_cmp2db = new JSplitPane(JSplitPane.VERTICAL_SPLIT, compPlot, resultPlot);
    JSplitPane jsp_qry2cmp = new JSplitPane(JSplitPane.VERTICAL_SPLIT, queryPlot, jsp_cmp2db);
    jsp_cmp2db.setDividerLocation(height);
    jsp_qry2cmp.setDividerLocation(height - 25);
    jsp_qry2cmp.setMinimumSize(new Dimension(190, 0));
    viewTabPane.addTab("Compare View", jsp_qry2cmp);
    viewTabPane.addTab("Package View", pkgView);
    viewTabPane.setToolTipTextAt(TAB_VIEW_COMPARE, "Comparison of query and result spectrum.");
    viewTabPane.setToolTipTextAt(TAB_VIEW_PACKAGE, "Package comparison of query and result spectrum.");
    viewTabPane.setSelectedIndex(TAB_VIEW_COMPARE);
    viewTabPane.setFocusable(false);
    JSplitPane jsp = new JSplitPane(JSplitPane.VERTICAL_SPLIT, queryPanel, resultTabPane);
    jsp.setDividerLocation(310);
    jsp.setMinimumSize(new Dimension(180, 0));
    jsp.setOneTouchExpandable(true);
    JSplitPane jsp2 = new JSplitPane(JSplitPane.HORIZONTAL_SPLIT, jsp, viewTabPane);
    int divideSize = (int) (initAppletWidth * 0.4);
    divideSize = (divideSize >= 180) ? divideSize : 180;
    jsp2.setDividerLocation(divideSize);
    jsp2.setOneTouchExpandable(true);
    mainPanel.add(jsp2, BorderLayout.CENTER);
    add(mainPanel);
    queryPlot.setSearchPage(this);
    compPlot.setSearchPage(this);
    resultPlot.setSearchPage(this);
}

Example 62 with DefaultTableModel

use of javax.swing.table.DefaultTableModel in project MassBank-web by MassBank.

the class SearchPage method loadFile.

/**
 * �t�@�C���ǂݍ��ݏ���
 * @param fileName �t�@�C����
 */
private void loadFile(String fileName) {
    seaqCompound = 0;
    seaqId = 0;
    String reqUrl = baseUrl + "jsp/SearchPage.jsp?file=" + fileName;
    ArrayList<String> lineList = new ArrayList<String>();
    try {
        URL url = new URL(reqUrl);
        URLConnection con = url.openConnection();
        // ���X�|���X�擾
        BufferedReader in = new BufferedReader(new InputStreamReader(con.getInputStream()));
        String line = "";
        while ((line = in.readLine()) != null) {
            lineList.add(line);
        }
        in.close();
        // 1�s���ǂݍ��߂Ȃ������ꍇ
        if (lineList.size() == 0) {
            // ERROR�F�t�@�C��������܂���
            JOptionPane.showMessageDialog(null, "No file.", "Error", JOptionPane.ERROR_MESSAGE);
            return;
        }
    } catch (MalformedURLException mue) {
        // URL��������
        mue.printStackTrace();
        // ERROR�F�T�[�o�[�G���[
        JOptionPane.showMessageDialog(null, "Server error.", "Error", JOptionPane.ERROR_MESSAGE);
        return;
    } catch (IOException ie) {
        // ���o�͗�O
        ie.printStackTrace();
        // ERROR�F�T�[�o�[�G���[
        JOptionPane.showMessageDialog(null, "Server error.", "Error", JOptionPane.ERROR_MESSAGE);
        return;
    }
    DefaultTableModel dataModel = (DefaultTableModel) fileSorter.getTableModel();
    dataModel.setRowCount(0);
    Object[] row;
    String line = "";
    String peaksLine = "";
    UserFileData usrData = null;
    Vector<UserFileData> tmpUserDataList = new Vector<UserFileData>();
    int dataNum = 0;
    try {
        for (int i = 0; i < lineList.size(); i++) {
            line = lineList.get(i);
            // �R�����g�s�ǂݔ�΂�
            if (line.trim().startsWith("//")) {
                continue;
            }
            // ���R�[�h���擾����
            if (line.trim().indexOf(":") == -1 && line.trim().length() != 0) {
                if (usrData == null) {
                    usrData = new UserFileData();
                }
                if (line.lastIndexOf(";") != -1) {
                    peaksLine += line.trim();
                } else {
                    peaksLine += line.trim() + ";";
                }
            } else if (line.trim().startsWith("Name:")) {
                if (usrData == null) {
                    usrData = new UserFileData();
                }
                usrData.setName(line.substring(5).trim());
            } else if (line.trim().startsWith("ID:")) {
                if (usrData == null) {
                    usrData = new UserFileData();
                }
                usrData.setId(line.substring(3).trim());
            }
            // ���R�[�h���lj�����
            if (line.trim().length() == 0 || i == lineList.size() - 1) {
                if (usrData != null) {
                    dataNum++;
                    // === ID ===
                    if (usrData.getId().equals("")) {
                        usrData.setId(createId());
                    }
                    // === �������� ===
                    if (usrData.getName().equals("")) {
                        usrData.setName(createName());
                    }
                    if (peaksLine.length() != 0) {
                        // �s�[�N�����H(m/z������m/z�Ƌ��x�̑g�ݍ��킹)
                        double max = 0d;
                        ArrayList<String> peakList = new ArrayList<String>(Arrays.asList(peaksLine.split(";")));
                        for (int j = 0; j < peakList.size(); j++) {
                            peakList.set(j, peakList.get(j).replaceAll("^ +", ""));
                            peakList.set(j, peakList.get(j).replaceAll(" +", "\t"));
                            // �ő勭�x�ێ�
                            if (max < Double.parseDouble(peakList.get(j).split("\t")[1])) {
                                max = Double.parseDouble(peakList.get(j).split("\t")[1]);
                            }
                        }
                        Collections.sort(peakList, new PeakComparator());
                        // �����I�ɋ��x�𑊑΋��x�ɕϊ�
                        for (int j = 0; j < peakList.size(); j++) {
                            // m/z�ޔ�
                            String tmpMz = peakList.get(j).split("\t")[0];
                            // ���̋��x
                            String beforeVal = peakList.get(j).split("\t")[1];
                            // ���΋��x
                            long tmpVal = Math.round(Double.parseDouble(beforeVal) / max * 999d);
                            if (tmpVal > 999) {
                                tmpVal = 999;
                            }
                            if (tmpVal < 1) {
                                tmpVal = 1;
                            }
                            String afterVal = String.valueOf(tmpVal);
                            peakList.set(j, tmpMz + "\t" + afterVal);
                        }
                        usrData.setPeaks((String[]) peakList.toArray(new String[peakList.size()]));
                    }
                    // ���[�U�f�[�^���lj�
                    tmpUserDataList.add(usrData);
                    // �e�[�u�����lj�
                    row = new Object[3];
                    row[0] = String.valueOf(dataNum);
                    row[1] = usrData.getName();
                    row[2] = usrData.getId();
                    dataModel.addRow(row);
                }
                usrData = null;
                peaksLine = "";
            }
        }
    } catch (Exception e) {
        System.out.println("Illegal file format.");
        e.printStackTrace();
        // WARNING�F�t�@�C���t�H�[�}�b�g���s���ł�
        JOptionPane.showMessageDialog(null, "Illegal file format.", "Warning", JOptionPane.WARNING_MESSAGE);
        return;
    }
    userDataList = (UserFileData[]) tmpUserDataList.toArray(new UserFileData[tmpUserDataList.size()]);
    queryTabPane.setSelectedIndex(TAB_ORDER_FILE);
}

Example 63 with DefaultTableModel

use of javax.swing.table.DefaultTableModel in project MassBank-web by MassBank.

the class SearchPage method searchDb.

/**
 * DB����
 * �N�G���[�Ƀq�b�g����s�[�N�̃X�y�N�g����DB���猟������B
 * @param ps �s�[�N���
 * @param precursor �v���J�[�T�[
 * @param queryName �N�G���[��������
 * @param queryKey �N�G���[���R�[�h�L�[
 */
private void searchDb(String[] ps, String precursor, String queryName, String queryKey) {
    queryPlot.clear();
    compPlot.clear();
    resultPlot.clear();
    queryPlot.setPeaks(null, 0);
    compPlot.setPeaks(null, 1);
    resultPlot.setPeaks(null, 0);
    DefaultTableModel dataModel = (DefaultTableModel) resultSorter.getTableModel();
    dataModel.setRowCount(0);
    hitLabel.setText("");
    if (queryTabPane.getSelectedIndex() == TAB_ORDER_DB) {
        queryPlot.setSpectrumInfo(queryName, queryKey, precursor, PeakPanel.SP_TYPE_QUERY, false);
    } else if (queryTabPane.getSelectedIndex() == TAB_ORDER_FILE) {
        queryPlot.setSpectrumInfo(queryName, queryKey, precursor, PeakPanel.SP_TYPE_QUERY, true);
    }
    // �N�G�����X�y�N�g���̃s�[�N���Ȃ��ꍇ
    if (ps.length == 0 || (ps.length == 1 && ps[0].split("\t")[0].equals("0") && ps[0].split("\t")[1].equals("0"))) {
        queryPlot.setNoPeak(true);
        hitLabel.setText(" 0 Hit.    (" + ((PRECURSOR < 1) ? "" : "Precursor : " + PRECURSOR + ", ") + "Tolerance : " + TOLERANCE + " " + ((tolUnit1.isSelected()) ? tolUnit1.getText() : tolUnit2.getText()) + ", Cutoff threshold : " + CUTOFF_THRESHOLD + ")");
        // �}�E�X�J�[�\�����f�t�H���g�J�[�\����
        this.setCursor(Cursor.getDefaultCursor());
        return;
    }
    // POST�f�[�^���쐬
    StringBuffer post = new StringBuffer();
    if (isRecInteg)
        post.append("INTEG=true&");
    else if (isRecActu)
        post.append("INTEG=false&");
    if (PRECURSOR > 0) {
        post.append("PRE=" + PRECURSOR + "&");
    }
    post.append("CUTOFF=" + CUTOFF_THRESHOLD + "&");
    post.append("TOLERANCE=" + TOLERANCE + "&");
    if (tolUnit2.isSelected())
        post.append("TOLUNIT=ppm&");
    else
        post.append("TOLUNIT=unit&");
    post.append("INST=");
    StringBuffer instTmp = new StringBuffer();
    boolean isInstAll = true;
    for (Iterator i = isInstCheck.keySet().iterator(); i.hasNext(); ) {
        String key = (String) i.next();
        if ((isInstCheck.get(key))) {
            if (instTmp.length() > 0) {
                instTmp.append(",");
            }
            instTmp.append(key);
        } else {
            isInstAll = false;
        }
    }
    if (isInstAll) {
        if (instTmp.length() > 0) {
            instTmp.append(",");
        }
        instTmp.append("ALL");
    }
    post.append(instTmp.toString() + "&");
    post.append("MS=");
    StringBuffer msTmp = new StringBuffer();
    boolean isMsAll = true;
    for (Iterator i = isMsCheck.keySet().iterator(); i.hasNext(); ) {
        String key = (String) i.next();
        if ((isMsCheck.get(key))) {
            if (msTmp.length() > 0) {
                msTmp.append(",");
            }
            msTmp.append(key);
        } else {
            isMsAll = false;
        }
    }
    if (isMsAll) {
        if (msTmp.length() > 0) {
            msTmp.append(",");
        }
        msTmp.append("ALL");
    }
    post.append(msTmp.toString() + "&");
    if (isIonRadio.get("Posi")) {
        post.append("ION=1&");
    } else if (isIonRadio.get("Nega")) {
        post.append("ION=-1&");
    } else {
        post.append("ION=0&");
    }
    post.append("VAL=");
    for (int i = 0; i < ps.length; i++) {
        post.append(ps[i].replace("\t", ",") + "@");
    }
    // ��ʑ���𖳌�����
    setOperationEnbled(false);
    // �������_�C�A���O�\������
    dlg.setVisible(true);
    this.param = post.toString();
    this.ps = ps;
    SwingWorker worker = new SwingWorker() {

        private ArrayList<String> result = null;

        public Object construct() {
            // �T�[�u���b�g�Ăяo��-�}���`�X���b�h��CGI���N��
            String cgiType = MassBankCommon.CGI_TBL[MassBankCommon.CGI_TBL_NUM_TYPE][MassBankCommon.CGI_TBL_TYPE_SEARCH];
            result = mbcommon.execMultiDispatcher(baseUrl, cgiType, SearchPage.this.param);
            return null;
        }

        public void finished() {
            // ��ʑ��얳������������
            setOperationEnbled(true);
            // �������_�C�A���O���\���ɂ���
            dlg.setVisible(false);
            int total = 0;
            if (result != null && result.size() > 0) {
                total = result.size();
                DefaultTableModel dataModel = (DefaultTableModel) resultSorter.getTableModel();
                // �������ʂ�DBTable�ɃZ�b�g
                siteList = new String[total];
                for (int i = 0; i < total; i++) {
                    String line = (String) result.get(i);
                    String[] item = line.split("\t");
                    String id = item[0];
                    String name = item[1];
                    // Score, Hit
                    String score = "";
                    String hit = "";
                    String hitScore = item[2];
                    int pos = hitScore.indexOf(".");
                    if (pos > 0) {
                        score = "0" + hitScore.substring(pos);
                        hit = hitScore.substring(0, pos);
                    } else {
                        score = "0";
                        hit = hitScore;
                    }
                    Double dblScore = Double.parseDouble(score);
                    Integer ihit = Integer.parseInt(hit);
                    // Ion
                    int iIon = Integer.parseInt(item[3]);
                    String ion = "";
                    if (iIon > 0) {
                        ion = "P";
                    } else if (iIon < 0) {
                        ion = "N";
                    } else {
                        ion = "-";
                    }
                    // SiteName
                    String siteName = siteNameList[Integer.parseInt(item[4])];
                    siteList[i] = item[4];
                    // Name, Score, Hit, ID, Ion, SiteName, No.
                    Object[] rowData = { name, dblScore, ihit, id, ion, siteName, (i + 1) };
                    dataModel.addRow(rowData);
                }
            }
            PeakData peak = new PeakData(SearchPage.this.ps);
            queryPlot.setPeaks(peak, 0);
            compPlot.setPeaks(peak, 0);
            resultTabPane.setSelectedIndex(0);
            setAllPlotAreaRange(queryPlot);
            SearchPage.this.setCursor(Cursor.getDefaultCursor());
            hitLabel.setText(" " + total + " Hit.    (" + ((PRECURSOR < 1) ? "" : "Precursor : " + PRECURSOR + ", ") + "Tolerance : " + TOLERANCE + " " + ((tolUnit1.isSelected()) ? tolUnit1.getText() : tolUnit2.getText()) + ", Cutoff threshold : " + CUTOFF_THRESHOLD + ")");
            hitLabel.setToolTipText(" " + total + " Hit.    (" + ((PRECURSOR < 1) ? "" : "Precursor : " + PRECURSOR + ", ") + "Tolerance : " + TOLERANCE + " " + ((tolUnit1.isSelected()) ? tolUnit1.getText() : tolUnit2.getText()) + ", Cutoff threshold : " + CUTOFF_THRESHOLD + ")");
        }
    };
    worker.start();
}

Example 64 with DefaultTableModel

use of javax.swing.table.DefaultTableModel in project knime-core by knime.

the class ShapeManagerNodeDialogPane method columnChanged.

private void columnChanged(final String column) {
    final LinkedHashMap<DataCell, Shape> domMap = m_map.get(column);
    TableModel tableModel = new DefaultTableModel() {

        private final DataCell[] m_valueNames = new DataCell[domMap.size()];

        {
            int row = 0;
            for (DataCell cell : domMap.keySet()) {
                m_valueNames[row] = cell;
                row++;
            }
        }

        @Override
        public String getColumnName(final int columnIdx) {
            if (columnIdx == 1) {
                return "Shapes";
            } else {
                return "Values of " + column;
            }
        }

        @Override
        public boolean isCellEditable(final int row, final int columnIdx) {
            return (columnIdx == 1);
        }

        @Override
        public int getRowCount() {
            return domMap.size();
        }

        @Override
        public int getColumnCount() {
            return 2;
        }

        @Override
        public Class<?> getColumnClass(final int columnIndex) {
            if (columnIndex == 1) {
                return Shape.class;
            } else {
                return DataCell.class;
            }
        }

        @Override
        public Object getValueAt(final int row, final int columnIndex) {
            if (columnIndex == 1) {
                return domMap.get(m_valueNames[row]);
            } else {
                return m_valueNames[row];
            }
        }

        @Override
        public void setValueAt(final Object aValue, final int row, final int columnIdx) {
            assert aValue instanceof Shape;
            assert columnIdx == 1;
            domMap.put(m_valueNames[row], (Shape) aValue);
        }
    };
    m_valueTable.setModel(tableModel);
    m_valueTable.getColumnModel().getColumn(1).setCellEditor(new DefaultCellEditor(new ShapeSelectionComboBox()));
    m_valueTable.getColumnModel().getColumn(1).setCellRenderer(new ShapeSelectionComboBoxRenderer());
}

Example 65 with DefaultTableModel

use of javax.swing.table.DefaultTableModel in project knime-core by knime.

the class AbstractAccuracyScorerNodeView method modelChanged.

/**
 * {@inheritDoc}
 */
@Override
public void modelChanged() {
    ScorerViewData viewData = getScorerViewData();
    if (viewData == null) {
        // model is not executed yet, or was reset.
        // m_precision.setText(" n/a ");
        String na = " n/a ";
        setLabels(na, na, na, null, na, null, na, null);
        setTableViewModel(new DefaultTableModel());
        if (m_hiLite) {
            setCellHilited(new boolean[0][0]);
        }
        return;
    }
    String rowHeaderDescription = viewData.getFirstCompareColumn();
    String columnHeaderDescription = viewData.getSecondCompareColumn();
    if (m_hiLite) {
        // init the boolean array determining which cell is selected
        setCellHilited(new boolean[viewData.getScorerCount().length][viewData.getScorerCount().length]);
        updateHilitedCells();
    }
    ConfusionTableModel dataModel = new ConfusionTableModel(viewData.getScorerCount(), viewData.getTargetValues(), rowHeaderDescription, columnHeaderDescription);
    setTableViewModel(dataModel);
    double error = 100.0 * viewData.getError();
    double accuracy = 100.0 * viewData.getAccuracy();
    double cohenKappa = viewData.getCohenKappa();
    setLabels(viewData.getCorrectCount(), viewData.getFalseCount(), error, accuracy, cohenKappa);
}