Examples with StateEdit javax.swing.undo.StateEdit used on opensource projects

Example 16 with StateEdit

use of javax.swing.undo.StateEdit in project knetbuilder by Rothamsted.

the class SubGraphFilter method callFilter.

private void callFilter() throws InvalidPluginArgumentException {
    StateEdit edit = new StateEdit(new VisibilityUndo(viewer.getONDEXJUNGGraph()), this.getName());
    OVTK2Desktop desktop = OVTK2Desktop.getInstance();
    desktop.setRunningProcess(this.getName());
    // contains results
    Set<ONDEXConcept> concepts = null;
    Set<ONDEXRelation> relations = null;
    // get user choices
    PickedState<ONDEXMetaConcept> ccPI = visviewer.getPickedVertexState();
    PickedState<ONDEXMetaRelation> rtPI = visviewer.getPickedEdgeState();
    // seed nodes from viewer start subgraph at each of them
    for (Object o : nodeSelection.getSelectedValuesList()) {
        ONDEXConcept root = ((ONDEXNodeWrapper) o).node;
        ConceptClass rootCC = root.getOfType();
        // execute filter
        Filter filter = new Filter();
        ONDEXPluginArguments fa = new ONDEXPluginArguments(filter.getArgumentDefinitions());
        fa.addOption(ArgumentNames.ROOT_ARG, root.getId());
        // graph traversal to identify selected concept classes
        for (ONDEXMetaConcept mc : meta.getVertices()) {
            // found root, make sure its still picked
            if (mc.getMetaData().equals(rootCC) && ccPI.isPicked(mc)) {
                seenConcepts = new HashSet<ONDEXMetaConcept>();
                seenRelations = new HashSet<ONDEXMetaRelation>();
                traverseGraph(fa, ccPI, rtPI, mc);
            }
        }
        filter.setArguments(fa);
        filter.setONDEXGraph(graph);
        try {
            filter.start();
        } catch (Exception e) {
            e.printStackTrace();
        }
        // concatenate results
        if (concepts == null) {
            concepts = filter.getVisibleConcepts();
            relations = filter.getVisibleRelations();
        } else {
            concepts = BitSetFunctions.or(concepts, filter.getVisibleConcepts());
            relations = BitSetFunctions.or(relations, filter.getVisibleRelations());
        }
    }
    // show results in graph
    if (concepts != null) {
        // set all relations to invisible
        graph.setVisibility(graph.getRelations(), false);
        // set all concepts to invisible
        graph.setVisibility(graph.getConcepts(), false);
        // first set concepts visible
        graph.setVisibility(concepts, true);
        // second set relations visible
        graph.setVisibility(relations, true);
        // propagate change to viewer
        viewer.getVisualizationViewer().getModel().fireStateChanged();
    }
    edit.end();
    viewer.getUndoManager().addEdit(edit);
    desktop.getOVTK2Menu().updateUndoRedo(viewer);
    desktop.notifyTerminationOfProcess();
}

Example 17 with StateEdit

use of javax.swing.undo.StateEdit in project knetbuilder by Rothamsted.

the class DialogEdges method actionPerformed.

/**
 * @see java.awt.event.ActionListener#actionPerformed(java.awt.event.ActionEvent)
 */
public void actionPerformed(ActionEvent arg0) {
    String cmd = arg0.getActionCommand();
    // sync visibility
    if (cmd.equals("apply")) {
        StateEdit edit = new StateEdit(new VisibilityUndo(viewer.getONDEXJUNGGraph()), this.getName());
        // this is for edge visibility
        Map<ONDEXRelation, Boolean> visible = model.getData();
        for (ONDEXRelation relation : visible.keySet()) {
            graph.setVisibility(relation, visible.get(relation));
        }
        viewer.getVisualizationViewer().getModel().fireStateChanged();
        edit.end();
        viewer.getUndoManager().addEdit(edit);
        OVTK2Desktop.getInstance().getOVTK2Menu().updateUndoRedo(viewer);
    } else // cancel dialog
    if (cmd.equals("cancel")) {
        try {
            this.setClosed(true);
        } catch (PropertyVetoException e) {
            ErrorDialog.show(e);
        }
    } else // load visible flags from Attribute
    if (cmd.equals("load")) {
        // clear existing visibility list
        Map<ONDEXRelation, Boolean> visible = model.getData();
        for (ONDEXRelation key : visible.keySet()) {
            visible.put(key, false);
        }
        // fill from Attribute
        for (ONDEXRelation relation : graph.getRelationsOfAttributeName(an)) {
            Attribute attribute = relation.getAttribute(an);
            visible.put(relation, (Boolean) attribute.getValue());
        }
        // clear existing visibility list
        elv.clear();
        // fill from Attribute
        for (ONDEXRelation relation : graph.getRelationsOfAttributeName(anELV)) {
            Attribute attribute = relation.getAttribute(anELV);
            elv.put(relation, ((Boolean) attribute.getValue()).booleanValue());
        }
        model.fireTableDataChanged();
    } else // store visible flags to Attribute
    if (cmd.equals("store")) {
        Map<ONDEXRelation, Boolean> visible = model.getData();
        for (ONDEXRelation relation : visible.keySet()) {
            Attribute attribute = relation.getAttribute(an);
            // set edge visibility
            if (attribute == null) {
                relation.createAttribute(an, visible.get(relation), false);
            } else {
                attribute.setValue(visible.get(relation));
            }
            // set label visibility
            attribute = relation.getAttribute(anELV);
            if (attribute == null) {
                relation.createAttribute(anELV, elv.get(relation), false);
            } else {
                attribute.setValue(elv.get(relation));
            }
        }
    } else // toggle all visible
    if (cmd.equals("visible")) {
        if (visibleAll.getText().equals(Config.language.getProperty("Dialog.Edges.SelectAllVisible"))) {
            for (int x = 0, y = table.getRowCount(); x < y; x++) {
                table.setValueAt(true, x, table.convertColumnIndexToView(3));
            }
            visibleAll.setText(Config.language.getProperty("Dialog.Edges.DeSelectAllVisible"));
        } else if (visibleAll.getText().equals(Config.language.getProperty("Dialog.Edges.DeSelectAllVisible"))) {
            for (int x = 0, y = table.getRowCount(); x < y; x++) {
                table.setValueAt(false, x, table.convertColumnIndexToView(3));
            }
            visibleAll.setText(Config.language.getProperty("Dialog.Edges.SelectAllVisible"));
        }
        visibleAll.repaint();
    } else // toggle all labels
    if (cmd.equals("labels")) {
        if (labelsAll.getText().equals(Config.language.getProperty("Dialog.Edges.SelectAllLabels"))) {
            for (int x = 0, y = table.getRowCount(); x < y; x++) {
                table.setValueAt(true, x, table.convertColumnIndexToView(4));
            }
            labelsAll.setText(Config.language.getProperty("Dialog.Edges.DeSelectAllLabels"));
        } else if (labelsAll.getText().equals(Config.language.getProperty("Dialog.Edges.DeSelectAllLabels"))) {
            for (int x = 0, y = table.getRowCount(); x < y; x++) {
                table.setValueAt(false, x, table.convertColumnIndexToView(4));
            }
            labelsAll.setText(Config.language.getProperty("Dialog.Edges.SelectAllLabels"));
        }
        labelsAll.repaint();
    }
}

Example 18 with StateEdit

use of javax.swing.undo.StateEdit in project knetbuilder by Rothamsted.

the class DialogNodes method actionPerformed.

/**
 * @see java.awt.event.ActionListener#actionPerformed(java.awt.event.ActionEvent)
 */
public void actionPerformed(ActionEvent arg0) {
    String cmd = arg0.getActionCommand();
    // sync visibility
    if (cmd.equals("apply")) {
        StateEdit edit = new StateEdit(new VisibilityUndo(graph), this.getName());
        // this is for node visibility
        Map<ONDEXConcept, Boolean> visible = model.getData();
        for (ONDEXConcept concept : visible.keySet()) {
            graph.setVisibility(concept, visible.get(concept));
        }
        // backward sync just in case
        Set<ONDEXConcept> visibleSet = new HashSet<ONDEXConcept>();
        for (ONDEXConcept concept : graph.getConcepts()) {
            if (graph.isVisible(concept))
                visibleSet.add(concept);
        }
        // include neighbours of given level
        int levelValue = (Integer) level.getValue();
        BitSet expanded = new BitSet();
        if (levelValue > 0) {
            for (ONDEXConcept concept : visibleSet) {
                BitSet[] temp = StandardFunctions.getNeighboursAtLevel(concept, graph, levelValue);
                expanded.or(temp[0]);
            }
            for (int i = expanded.nextSetBit(0); i >= 0; i = expanded.nextSetBit(i + 1)) visibleSet.add(graph.getConcept(i));
        }
        // set neighbours visible too
        for (ONDEXConcept concept : visibleSet) graph.setVisibility(concept, true);
        // update node labels with new mask
        viewer.getVisualizationViewer().getModel().fireStateChanged();
        edit.end();
        viewer.getUndoManager().addEdit(edit);
        OVTK2Desktop.getInstance().getOVTK2Menu().updateUndoRedo(viewer);
    } else // cancel dialog
    if (cmd.equals("cancel")) {
        try {
            this.setClosed(true);
        } catch (PropertyVetoException e) {
            ErrorDialog.show(e);
        }
    } else // load visible flags from Attribute
    if (cmd.equals("load")) {
        // clear existing visibility list
        Map<ONDEXConcept, Boolean> visible = model.getData();
        for (ONDEXConcept concept : visible.keySet()) {
            visible.put(concept, false);
        }
        // fill from Attribute
        for (ONDEXConcept concept : graph.getConceptsOfAttributeName(an)) {
            Attribute attribute = concept.getAttribute(an);
            visible.put(concept, (Boolean) attribute.getValue());
        }
        // clear existing visibility list
        nlv.clear();
        // fill from Attribute
        for (ONDEXConcept concept : graph.getConceptsOfAttributeName(anNLV)) {
            Attribute attribute = concept.getAttribute(anNLV);
            nlv.put(concept, ((Boolean) attribute.getValue()).booleanValue());
        }
        model.fireTableDataChanged();
    } else // store visible flags to Attribute
    if (cmd.equals("store")) {
        Map<ONDEXConcept, Boolean> visible = model.getData();
        for (ONDEXConcept concept : visible.keySet()) {
            Attribute attribute = concept.getAttribute(an);
            // set node visibility
            if (attribute == null) {
                concept.createAttribute(an, visible.get(concept), false);
            } else {
                attribute.setValue(visible.get(concept));
            }
            // set label visibility
            attribute = concept.getAttribute(anNLV);
            if (attribute == null) {
                concept.createAttribute(anNLV, nlv.get(concept), false);
            } else {
                attribute.setValue(nlv.get(concept));
            }
        }
    } else // toggle all visible
    if (cmd.equals("visible")) {
        if (visibleAll.getText().equals(Config.language.getProperty("Dialog.Nodes.SelectAllVisible"))) {
            for (int x = 0, y = table.getRowCount(); x < y; x++) {
                table.setValueAt(true, x, table.convertColumnIndexToView(3));
            }
            visibleAll.setText(Config.language.getProperty("Dialog.Nodes.DeSelectAllVisible"));
        } else if (visibleAll.getText().equals(Config.language.getProperty("Dialog.Nodes.DeSelectAllVisible"))) {
            for (int x = 0, y = table.getRowCount(); x < y; x++) {
                table.setValueAt(false, x, table.convertColumnIndexToView(3));
            }
            visibleAll.setText(Config.language.getProperty("Dialog.Nodes.SelectAllVisible"));
        }
        visibleAll.repaint();
    } else // toggle all labels
    if (cmd.equals("labels")) {
        if (labelsAll.getText().equals(Config.language.getProperty("Dialog.Nodes.SelectAllLabels"))) {
            for (int x = 0, y = table.getRowCount(); x < y; x++) {
                table.setValueAt(true, x, table.convertColumnIndexToView(4));
            }
            labelsAll.setText(Config.language.getProperty("Dialog.Nodes.DeSelectAllLabels"));
        } else if (labelsAll.getText().equals(Config.language.getProperty("Dialog.Nodes.DeSelectAllLabels"))) {
            for (int x = 0, y = table.getRowCount(); x < y; x++) {
                table.setValueAt(false, x, table.convertColumnIndexToView(4));
            }
            labelsAll.setText(Config.language.getProperty("Dialog.Nodes.SelectAllLabels"));
        }
        labelsAll.repaint();
    }
}

Example 19 with StateEdit

use of javax.swing.undo.StateEdit in project knetbuilder by Rothamsted.

the class AttributeValueFilter method actionPerformed.

@Override
public void actionPerformed(ActionEvent ae) {
    StateEdit edit = new StateEdit(new VisibilityUndo(viewer.getONDEXJUNGGraph()), this.getName());
    OVTK2Desktop desktop = OVTK2Desktop.getInstance();
    desktop.setRunningProcess(this.getName());
    Filter filter = new Filter();
    filter.addONDEXListener(this);
    try {
        ONDEXPluginArguments fa = new ONDEXPluginArguments(filter.getArgumentDefinitions());
        fa.addOption(ArgumentNames.ATTRNAME_ARG, target.getId());
        for (int index : values.getSelectedIndices()) {
            fa.addOption(ArgumentNames.VALUE_ARG, vlm.getObjectAt(index).toString());
        }
        fa.addOption(ArgumentNames.OPERATOR_ARG, "=");
        fa.addOption(ArgumentNames.INCLUDING_ARG, Boolean.FALSE);
        fa.addOption(ArgumentNames.MODULUS_ARG, Boolean.FALSE);
        filter.setArguments(fa);
        filter.setONDEXGraph(graph);
        filter.start();
    } catch (Exception e) {
        ErrorDialog.show(e);
    }
    for (ONDEXRelation r : filter.getInVisibleRelations()) {
        graph.setVisibility(r, visibility);
    }
    for (ONDEXConcept c : filter.getInVisibleConcepts()) {
        graph.setVisibility(c, visibility);
    }
    viewer.getVisualizationViewer().getModel().fireStateChanged();
    edit.end();
    viewer.getUndoManager().addEdit(edit);
    desktop.getOVTK2Menu().updateUndoRedo(viewer);
    desktop.notifyTerminationOfProcess();
    used = true;
}

Example 20 with StateEdit

use of javax.swing.undo.StateEdit in project knetbuilder by Rothamsted.

the class ConceptClassFilter method callFilter.

/**
 * Calls backend filter.
 */
private void callFilter() throws InvalidPluginArgumentException {
    // this is the exit condition just to make sure
    if (conceptClassTargets == null || conceptClassTargets.size() == 0)
        return;
    // now start now undo edit
    StateEdit edit = new StateEdit(new VisibilityUndo(viewer.getONDEXJUNGGraph()), this.getName());
    OVTK2Desktop desktop = OVTK2Desktop.getInstance();
    desktop.setRunningProcess(this.getName());
    // new instance of filter and set arguments
    Filter filter = new Filter();
    // construct filter arguments
    ONDEXPluginArguments fa = new ONDEXPluginArguments(filter.getArgumentDefinitions());
    fa.addOption(Filter.EXCLUDE_ARG, true);
    // add all concept class restrictions
    Iterator<ConceptClass> it = conceptClassTargets.iterator();
    while (it.hasNext()) {
        fa.addOption(Filter.TARGETCC_ARG, it.next().getId());
    }
    // optional data source restriction
    if (dataSourceList.getSelectedValue() != null) {
        fa.addOption(Filter.FILTER_CV_ARG, dataSourceListModel.getDataSourceAt(dataSourceList.getSelectedIndex()).getId());
    }
    // set filter arguments
    filter.setONDEXGraph(graph);
    filter.setArguments(fa);
    // execute filter
    filter.start();
    // get results from filter
    Set<ONDEXConcept> concepts = filter.getInVisibleConcepts();
    Set<ONDEXRelation> relations = filter.getInVisibleRelations();
    // check for visibility selection
    if (visibility) {
        graph.setVisibility(concepts, true);
        graph.setVisibility(relations, true);
    } else {
        graph.setVisibility(relations, false);
        graph.setVisibility(concepts, false);
    }
    // propagate change to viewer
    viewer.getVisualizationViewer().getModel().fireStateChanged();
    edit.end();
    viewer.getUndoManager().addEdit(edit);
    desktop.getOVTK2Menu().updateUndoRedo(viewer);
    desktop.notifyTerminationOfProcess();
}