Examples with LEGATO legato.LEGATO used on opensource projects

Example 6 with LEGATO

use of legato.LEGATO in project legato by DOREMUS-ANR.

the class GUI method initialize.

/**
 * Initialize the contents of the frame.
 */
private void initialize() {
    try {
        frame = new JFrame();
        frame.setTitle("LEGATO");
        frame.setSize(890, 900);
        frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
        Dimension dim = Toolkit.getDefaultToolkit().getScreenSize();
        frame.setLocation(dim.width / 2 - frame.getSize().width / 2, dim.height / 2 - frame.getSize().height / 2);
        frame.getContentPane().setLayout(null);
        /**
         ***************************
         * Description panel
         ****************************
         */
        JPanel panel_1 = new JPanel();
        panel_1.setFont(new Font("Tahoma", Font.PLAIN, 11));
        panel_1.setBorder(new TitledBorder(UIManager.getBorder("TitledBorder.border"), "Results", TitledBorder.LEADING, TitledBorder.TOP, null, new Color(0, 70, 213)));
        panel_1.setBounds(25, 677, 828, 151);
        panel_1.setLayout(null);
        resultsArea = new JTextArea();
        JScrollPane scrollPane = new JScrollPane(resultsArea);
        scrollPane.setBounds(15, 39, 798, 96);
        panel_1.add(scrollPane);
        frame.getContentPane().add(panel_1);
        JPanel panel_2 = new JPanel();
        panel_2.setFont(new Font("Tahoma", Font.PLAIN, 11));
        panel_2.setBorder(new TitledBorder(UIManager.getBorder("TitledBorder.border"), "Properties", TitledBorder.LEADING, TitledBorder.TOP, null, new Color(0, 70, 213)));
        panel_2.setBounds(15, 298, 838, 384);
        panel_2.setLayout(null);
        inputProp = new JTextArea();
        inputProp.addMouseListener(new MouseAdapter() {

            @Override
            public void mouseClicked(MouseEvent e) {
                int line;
                try {
                    line = inputProp.getLineOfOffset(inputProp.getCaretPosition());
                    int start = inputProp.getLineStartOffset(line);
                    int end = inputProp.getLineEndOffset(line);
                    DefaultHighlighter highlighter = (DefaultHighlighter) inputProp.getHighlighter();
                    DefaultHighlighter.DefaultHighlightPainter painter = new DefaultHighlighter.DefaultHighlightPainter(Color.lightGray);
                    // this is the key line
                    highlighter.setDrawsLayeredHighlights(false);
                    highlighter.addHighlight(start, end, painter);
                    selectedProp = inputProp.getDocument().getText(start, end - start);
                } catch (BadLocationException e1) {
                    e1.printStackTrace();
                }
            }
        });
        JScrollPane scrollPane2 = new JScrollPane(inputProp);
        scrollPane2.setBounds(15, 36, 342, 330);
        panel_2.add(scrollPane2);
        frame.getContentPane().add(panel_2);
        JScrollPane scrollPane_1 = new JScrollPane((Component) null);
        scrollPane_1.setBounds(500, 36, 323, 330);
        panel_2.add(scrollPane_1);
        JTextArea outputProp = new JTextArea();
        scrollPane_1.setViewportView(outputProp);
        outputProp.addMouseListener(new MouseAdapter() {

            @Override
            public void mouseClicked(MouseEvent e) {
                int line;
                try {
                    line = outputProp.getLineOfOffset(outputProp.getCaretPosition());
                    int start = outputProp.getLineStartOffset(line);
                    int end = outputProp.getLineEndOffset(line);
                    DefaultHighlighter highlighter = (DefaultHighlighter) outputProp.getHighlighter();
                    DefaultHighlighter.DefaultHighlightPainter painter = new DefaultHighlighter.DefaultHighlightPainter(Color.lightGray);
                    // this is the key line
                    highlighter.setDrawsLayeredHighlights(false);
                    highlighter.addHighlight(start, end, painter);
                    propForDelete = outputProp.getDocument().getText(start, end - start);
                } catch (BadLocationException e1) {
                    e1.printStackTrace();
                }
            }
        });
        JPanel panel = new JPanel();
        panel.setFont(new Font("Tahoma", Font.BOLD, 12));
        panel.setBorder(new TitledBorder(UIManager.getBorder("TitledBorder.border"), "Input Files", TitledBorder.LEADING, TitledBorder.TOP, null, new Color(0, 70, 213)));
        panel.setBounds(14, 12, 839, 132);
        frame.getContentPane().add(panel);
        panel.setLayout(null);
        JLabel lblSourceDataset = new JLabel("Source Dataset :");
        lblSourceDataset.setBounds(15, 29, 125, 20);
        panel.add(lblSourceDataset);
        JLabel lblTargetDataset = new JLabel("Target Dataset :");
        lblTargetDataset.setBounds(15, 63, 125, 20);
        panel.add(lblTargetDataset);
        JLabel lblAlignmentFile = new JLabel("Alignment File :");
        lblAlignmentFile.setBounds(15, 99, 125, 20);
        panel.add(lblAlignmentFile);
        sourceField = new JTextField();
        sourceField.setBounds(138, 26, 603, 26);
        panel.add(sourceField);
        sourceField.setColumns(10);
        targetField = new JTextField();
        targetField.setColumns(10);
        targetField.setBounds(138, 60, 603, 26);
        panel.add(targetField);
        alignmentField = new JTextField();
        alignmentField.setColumns(10);
        alignmentField.setBounds(138, 96, 603, 26);
        panel.add(alignmentField);
        JPanel panel_3 = new JPanel();
        panel_3.setBorder(new TitledBorder(UIManager.getBorder("TitledBorder.border"), "Classes", TitledBorder.LEADING, TitledBorder.TOP, null, Color.BLUE));
        panel_3.setToolTipText("");
        panel_3.setBounds(15, 172, 838, 123);
        frame.getContentPane().add(panel_3);
        panel_3.setLayout(null);
        JScrollPane scrollPane_2 = new JScrollPane((Component) null);
        scrollPane_2.setBounds(15, 26, 342, 81);
        panel_3.add(scrollPane_2);
        JTextArea inputClasses = new JTextArea();
        scrollPane_2.setViewportView(inputClasses);
        inputClasses.addMouseListener(new MouseAdapter() {

            @Override
            public void mouseClicked(MouseEvent e) {
                int line;
                try {
                    line = inputClasses.getLineOfOffset(inputClasses.getCaretPosition());
                    int start = inputClasses.getLineStartOffset(line);
                    int end = inputClasses.getLineEndOffset(line);
                    DefaultHighlighter highlighter = (DefaultHighlighter) inputClasses.getHighlighter();
                    DefaultHighlighter.DefaultHighlightPainter painter = new DefaultHighlighter.DefaultHighlightPainter(Color.lightGray);
                    // this is the key line
                    highlighter.setDrawsLayeredHighlights(false);
                    highlighter.addHighlight(start, end, painter);
                    selectedClass = inputClasses.getDocument().getText(start, end - start);
                } catch (BadLocationException e1) {
                    e1.printStackTrace();
                }
            }
        });
        JScrollPane scrollPane_3 = new JScrollPane((Component) null);
        scrollPane_3.setBounds(496, 26, 327, 81);
        panel_3.add(scrollPane_3);
        JTextArea outputClasses = new JTextArea();
        outputClasses.addMouseListener(new MouseAdapter() {

            @Override
            public void mouseClicked(MouseEvent e) {
                int line;
                try {
                    line = outputClasses.getLineOfOffset(outputClasses.getCaretPosition());
                    int start = outputClasses.getLineStartOffset(line);
                    int end = outputClasses.getLineEndOffset(line);
                    DefaultHighlighter highlighter = (DefaultHighlighter) outputClasses.getHighlighter();
                    DefaultHighlighter.DefaultHighlightPainter painter = new DefaultHighlighter.DefaultHighlightPainter(Color.lightGray);
                    // this is the key line
                    highlighter.setDrawsLayeredHighlights(false);
                    highlighter.addHighlight(start, end, painter);
                    classForDelete = outputClasses.getDocument().getText(start, end - start);
                } catch (BadLocationException e1) {
                    e1.printStackTrace();
                }
            }
        });
        scrollPane_3.setViewportView(outputClasses);
        /**
         ************************
         * Buttons
         *************************
         */
        JButton propAdd = new JButton("Add");
        propAdd.addActionListener(new ActionListener() {

            public void actionPerformed(ActionEvent e) {
                if (!selectedProp.equals(null)) {
                    if (!outputProp.getText().contains(selectedProp)) {
                        outputProp.setText((outputProp.getText() + "\n" + selectedProp).trim());
                        selectedProp = null;
                    }
                }
            }
        });
        propAdd.setBounds(372, 142, 115, 29);
        panel_2.add(propAdd);
        JButton propDelete = new JButton("Delete");
        propDelete.addActionListener(new ActionListener() {

            public void actionPerformed(ActionEvent e) {
                if (!propForDelete.equals(null)) {
                    if (outputProp.getText().contains(propForDelete)) {
                        outputProp.setText((outputProp.getText().replaceAll(propForDelete, "")).trim());
                    }
                }
            }
        });
        propDelete.setBounds(372, 199, 115, 29);
        panel_2.add(propDelete);
        JButton btnRun = new JButton("Run");
        btnRun.addActionListener(new ActionListener() {

            public void actionPerformed(ActionEvent e) {
                long beginTime = System.currentTimeMillis() / 1000;
                LEGATO legato = LEGATO.getInstance();
                legato.setBeginTime(beginTime);
                legato.addClasses(outputClasses.getText().trim());
                if (!alignmentField.getText().isEmpty())
                    legato.setRefAlign(new File(alignmentField.getText()));
                if (rdbtnAutomatic.isSelected()) {
                    matching = "automatic";
                    PropList propList = new PropList();
                    legato.setPropList(propList);
                    try {
                        PropertyHandler.clean(sourceField.getText(), targetField.getText());
                    } catch (IOException e1) {
                        e1.printStackTrace();
                    }
                } else if (rdbtnManuel.isSelected()) {
                    matching = "manual";
                    legato.addProperties(outputProp.getText().trim());
                    Model srcModel = ModelManager.loadModel(sourceField.getText());
                    Model tgtModel = ModelManager.loadModel(targetField.getText());
                    try {
                        legato.setSource(FileManager.getCreatedRDFile("source", srcModel));
                        legato.setTarget(FileManager.getCreatedRDFile("target", tgtModel));
                    } catch (IOException e1) {
                        e1.printStackTrace();
                    }
                }
                try {
                    legato.buildDocuments();
                } catch (Exception e1) {
                    e1.printStackTrace();
                }
            }
        });
        btnRun.setBounds(372, 339, 115, 29);
        panel_2.add(btnRun);
        JButton sourceAdd = new JButton("Add");
        sourceAdd.addActionListener(new ActionListener() {

            public void actionPerformed(ActionEvent arg0) {
                DatasetFileChooser dfc = new DatasetFileChooser(sourceField);
            }
        });
        sourceAdd.setBounds(756, 29, 68, 24);
        panel.add(sourceAdd);
        JButton targetAdd = new JButton("Add");
        targetAdd.addActionListener(new ActionListener() {

            public void actionPerformed(ActionEvent arg0) {
                DatasetFileChooser dfc = new DatasetFileChooser(targetField);
            }
        });
        targetAdd.setBounds(756, 64, 68, 24);
        panel.add(targetAdd);
        JButton alignmentAdd = new JButton("Add");
        alignmentAdd.addActionListener(new ActionListener() {

            public void actionPerformed(ActionEvent e) {
                DatasetFileChooser dfc = new DatasetFileChooser(alignmentField);
            }
        });
        alignmentAdd.setBounds(756, 100, 68, 24);
        panel.add(alignmentAdd);
        JButton classAdd = new JButton("Add");
        classAdd.addActionListener(new ActionListener() {

            public void actionPerformed(ActionEvent e) {
                if (!selectedClass.equals(null)) {
                    if (!outputClasses.getText().contains(selectedClass)) {
                        outputClasses.setText((outputClasses.getText() + "\n" + selectedClass).trim());
                    }
                }
            }
        });
        classAdd.setBounds(372, 26, 115, 29);
        panel_3.add(classAdd);
        JButton classDelete = new JButton("Delete");
        classDelete.addActionListener(new ActionListener() {

            public void actionPerformed(ActionEvent e) {
                if (!classForDelete.equals(null)) {
                    if (outputClasses.getText().contains(classForDelete)) {
                        outputClasses.setText((outputClasses.getText().replaceAll(classForDelete, "")).trim());
                    }
                }
            }
        });
        classDelete.setBounds(372, 71, 115, 29);
        panel_3.add(classDelete);
        rdbtnManuel = new JRadioButton("Manual");
        rdbtnManuel.addActionListener(new ActionListener() {

            public void actionPerformed(ActionEvent e) {
                rdbtnAutomatic.setSelected(false);
                Model srcModel = ModelManager.loadModel(sourceField.getText());
                Model tgtModel = ModelManager.loadModel(targetField.getText());
                List<Resource> classList = new ArrayList<Resource>();
                classList = ModelManager.getAllClassesFromModels(srcModel, tgtModel);
                inputClasses.setText(classList.toString().replaceAll(", ", "\n"));
                List<Property> propList = new ArrayList<Property>();
                propList = ModelManager.getAllPropFromModels(srcModel, tgtModel);
                inputProp.setText(propList.toString().replaceAll(", ", "\n"));
            }
        });
        rdbtnManuel.setBounds(465, 147, 155, 29);
        frame.getContentPane().add(rdbtnManuel);
        rdbtnAutomatic = new JRadioButton("Automatic");
        rdbtnAutomatic.addActionListener(new ActionListener() {

            public void actionPerformed(ActionEvent e) {
                rdbtnManuel.setSelected(false);
                inputProp.setText("");
                outputProp.setText("");
                Model srcModel = ModelManager.loadModel(sourceField.getText());
                Model tgtModel = ModelManager.loadModel(targetField.getText());
                List<Resource> classList = new ArrayList<Resource>();
                classList = ModelManager.getAllClassesFromModels(srcModel, tgtModel);
                inputClasses.setText(classList.toString().replaceAll(", ", "\n"));
            }
        });
        rdbtnAutomatic.setBounds(323, 147, 155, 29);
        frame.getContentPane().add(rdbtnAutomatic);
    } catch (Exception e) {
        e.printStackTrace();
    }
/*	JButton btnMatch = new JButton("Run");
		btnMatch.addActionListener(new ActionListener() {
			public void actionPerformed(ActionEvent e) {
				long beginTime = System.currentTimeMillis()/1000;
				LEGATO legato = LEGATO.getInstance();
				legato.setBeginTime(beginTime);
				PropList propList = new PropList();
				legato.setPropList(propList);
				if (!alignmentField.getText().isEmpty()) legato.setRefAlign(new File(alignmentField.getText()));
					try {
					//	ConceptFinder.loadVocabularies();
						PropertyHandler.clean(sourceField.getText(), targetField.getText());
						legato.buildDocuments();
					} catch (Exception e1) {
						e1.printStackTrace();
					}
			}
		});
		btnMatch.setBounds(306, 129, 68, 24);
		panel.add(btnMatch);*/
}

Example 7 with LEGATO

use of legato.LEGATO in project legato by DOREMUS-ANR.

the class CBDBuilder method getAllCBDs.

/**
 *******************************************
 * Get the CBD of all resources from an RDF model
 ********************************************
 */
public static Model getAllCBDs(Model model) {
    LEGATO legato = LEGATO.getInstance();
    List<Resource> resources = new ArrayList<Resource>();
    resources = getResources(model, legato.getClassResources());
    Model allCBDs = ModelFactory.createDefaultModel();
    Iterator iter = resources.iterator();
    while (iter.hasNext()) {
        Resource resource = (Resource) iter.next();
        String sparqlQueryString = "DESCRIBE <" + resource + ">";
        QueryFactory.create(sparqlQueryString);
        QueryExecution qexec = QueryExecutionFactory.create(sparqlQueryString, model);
        Model cbd = qexec.execDescribe();
        allCBDs.add(cbd);
        qexec.close();
    }
    return allCBDs;
}

Example 8 with LEGATO

use of legato.LEGATO in project legato by DOREMUS-ANR.

the class FileManager method getCreatedRDFile.

public static File getCreatedRDFile(String fileName, Model model) throws IOException {
    LEGATO legato = LEGATO.getInstance();
    FileWriter out = new FileWriter(legato.getPath() + File.separator + fileName + ".rdf");
    model.write(out, "RDF/XML");
    File file = new File(legato.getPath() + File.separator + fileName + ".rdf");
    out.close();
    return file;
}

Example 9 with LEGATO

use of legato.LEGATO in project legato by DOREMUS-ANR.

the class Align method evaluateMappings.

public static void evaluateMappings() throws AlignmentException {
    LEGATO legato = LEGATO.getInstance();
    if (legato.getRefAlign() == null)
        GUI.resultsArea.append("\nNo reference alignment file found !");
    else {
        AlignmentParser parser = new AlignmentParser(0);
        Alignment refAlign = parser.parse((legato.refAlign).toURI());
        Alignment mapFile = parser.parse(new File(legato.getPath() + File.separator + "results.rdf").toURI());
        Properties p = new Properties();
        Evaluator evaluator = new PRecEvaluator(refAlign, mapFile);
        evaluator.eval(p);
        GUI.resultsArea.append("\nEvaluation results:");
        GUI.resultsArea.append("\nF-Measure = " + Math.floor(((PRecEvaluator) evaluator).getFmeasure() * 100) / 100);
        GUI.resultsArea.append("\nPrecision = " + Math.floor(((PRecEvaluator) evaluator).getPrecision() * 100) / 100);
        GUI.resultsArea.append("\nRecall = " + Math.floor(((PRecEvaluator) evaluator).getRecall() * 100) / 100);
    }
}

Example 10 with LEGATO

use of legato.LEGATO in project legato by DOREMUS-ANR.

the class Align method saveMappings.

/**
 *******
 ** Create and save the alignment file
 ********
 */
public static void saveMappings(MapList mapList) throws Exception {
    LEGATO legato = LEGATO.getInstance();
    FileWriter alignFile = new FileWriter(legato.getPath() + File.separator + "results.rdf");
    BufferedWriter bw = new BufferedWriter(alignFile);
    PrintWriter pw = new PrintWriter(bw);
    pw.println("<?xml version='1.0' encoding='utf-8'?>");
    pw.println("<rdf:RDF xmlns='http://knowledgeweb.semanticweb.org/heterogeneity/alignment'");
    pw.println("xmlns:rdf='http://www.w3.org/1999/02/22-rdf-syntax-ns#'");
    pw.println("xmlns:xsd='http://www.w3.org/2001/XMLSchema#'>");
    pw.println("<Alignment>");
    pw.println("<xml>yes</xml>");
    pw.println("<level>0</level>");
    pw.println("<type>??</type>");
    pw.println(mapList.getAlignments());
    pw.println("</Alignment>");
    pw.println("</rdf:RDF>");
    pw.close();
    GUI.resultsArea.append("\nRunning time = " + (System.currentTimeMillis() / 1000 - legato.getBeginTime()) + " seconds");
    evaluateMappings();
}