Examples with Location loci.common.Location used on opensource projects

Example 71 with Location

use of loci.common.Location in project bioformats by openmicroscopy.

the class ImageFaker method fakeScreen.

public boolean fakeScreen(String[] args) {
    DebugTools.enableLogging("INFO");
    boolean validArgs = parseArgs(args);
    if (!validArgs || targetDirectoryPath == null) {
        printUsage();
        return false;
    }
    // make sure that we don't end up with just a ".fake" directory
    if (new Location(targetDirectoryPath).exists()) {
        Location p = new Location(targetDirectoryPath, "screen.fake");
        int index = 1;
        while (p.exists()) {
            p = new Location(targetDirectoryPath, "screen" + index + ".fake");
            index++;
        }
        targetDirectoryPath = p.getAbsolutePath();
    }
    Location directoryRoot;
    if (!FormatHandler.checkSuffix(targetDirectoryPath, ResourceNamer.FAKE_EXT)) {
        directoryRoot = new Location(targetDirectoryPath + ResourceNamer.DOT + ResourceNamer.FAKE_EXT);
    } else {
        directoryRoot = new Location(targetDirectoryPath);
    }
    FakeImage fake = new FakeImage(directoryRoot);
    fake.generateScreen(plates, plateAcquisitions, rows, columns, fields);
    return true;
}

Example 72 with Location

use of loci.common.Location in project bioformats by openmicroscopy.

the class FormatReaderTest method writeConfigFile.

@Test(groups = { "config" })
public void writeConfigFile() {
    setupReader();
    if (!initFile(false))
        return;
    String file = reader.getCurrentFile();
    try {
        String parent = new Location(file).getParent();
        String configDir = configTree.getConfigDirectory();
        String rootDir = configTree.getRootDirectory();
        if (configDir != null) {
            parent = parent.replaceAll(rootDir, configDir);
            File parentDir = new File(parent);
            if (!parentDir.exists()) {
                parentDir.mkdirs();
            }
        }
        File f = new File(parent, ".bioformats");
        LOGGER.info("Generating configuration: {}", f);
        Configuration newConfig = new Configuration(reader, f.getAbsolutePath());
        newConfig.saveToFile();
        reader.close();
    } catch (Throwable t) {
        LOGGER.info("", t);
        assert false;
    }
}

Example 73 with Location

use of loci.common.Location in project bioformats by openmicroscopy.

the class TestTools method getExternalSymlinkConfigFile.

/**
 * Retrieve an external symlinked configuration file given a root directory
 * and a test configuration.
 * @deprecated No replacement.
 */
@Deprecated
public static String getExternalSymlinkConfigFile(String root, final ConfigurationTree config) {
    // Look for a configuration file under the configuration directory
    try {
        String canonicalRoot = new Location(root).getCanonicalPath();
        if (!root.equals(canonicalRoot)) {
            String configCanonicalRoot = config.relocateToConfig(canonicalRoot);
            Location configFile = new Location(configCanonicalRoot, baseConfigName);
            if (configFile.exists()) {
                return configFile.getAbsolutePath();
            }
        }
    } catch (IOException e) {
    }
    ;
    return null;
}

Example 74 with Location

use of loci.common.Location in project bioformats by openmicroscopy.

the class Configuration method putTableName.

private void putTableName(IniTable table, IFormatReader reader, String suffix) {
    Location file = new Location(reader.getCurrentFile());
    table.put(IniTable.HEADER_KEY, file.getName() + suffix);
}

Example 75 with Location

use of loci.common.Location in project bioformats by openmicroscopy.

the class Configuration method setSeries.

public void setSeries(int series) {
    Location file = new Location(dataFile);
    currentTable = ini.getTable(file.getName() + SERIES + series);
}