Examples with ImageReader loci.formats.ImageReader used on opensource projects

Example 41 with ImageReader

use of loci.formats.ImageReader in project bioformats by openmicroscopy.

the class ImageReaderTest method testOptionsExplicit.

@Test
public void testOptionsExplicit() throws Exception {
    DynamicMetadataOptions opt = new DynamicMetadataOptions();
    opt.set(KEY, VALUE);
    ImageReader reader = new ImageReader();
    reader.setMetadataOptions(opt);
    reader.setId("test.fake");
    MetadataOptions rOpt = reader.getReader().getMetadataOptions();
    assertTrue(rOpt instanceof DynamicMetadataOptions);
    String v = ((DynamicMetadataOptions) rOpt).get(KEY);
    assertNotNull(v);
    assertEquals(v, VALUE);
    reader.close();
}

Example 42 with ImageReader

use of loci.formats.ImageReader in project bioformats by openmicroscopy.

the class IsThisTypeTests method setUp.

@BeforeMethod
public void setUp() {
    openReader = new ImageReader();
    noOpenReader = new ImageReader();
    noOpenReader.setAllowOpenFiles(false);
}

Example 43 with ImageReader

use of loci.formats.ImageReader in project bioformats by openmicroscopy.

the class ReaderEqualityTest method createEqualWrappers.

@DataProvider(name = "equalWrappers")
public Object[][] createEqualWrappers() {
    Location.mapId(TEST_FILE_A, TEST_FILE_A);
    Location.mapId(TEST_FILE_B, TEST_FILE_B);
    Object[][] wrappers = new Object[][] { { new ImageReader(), new ImageReader() }, { new ImageReader(), new ImageReader() }, { new MinMaxCalculator(new ChannelSeparator(new ChannelFiller())), new MinMaxCalculator(new ChannelSeparator(new ChannelFiller())) }, { new DimensionSwapper(new ChannelMerger()), new DimensionSwapper(new ChannelMerger()) } };
    for (int i = 1; i < wrappers.length; i++) {
        IFormatReader readerA = (IFormatReader) wrappers[i][0];
        IFormatReader readerB = (IFormatReader) wrappers[i][1];
        try {
            readerA.setId(TEST_FILE_A);
            readerB.setId(TEST_FILE_B);
        } catch (FormatException e) {
            e.printStackTrace();
        } catch (IOException e) {
            e.printStackTrace();
        }
    }
    return wrappers;
}

Example 44 with ImageReader

use of loci.formats.ImageReader in project bioformats by openmicroscopy.

the class ReaderEqualityTest method createUnequalWrappers.

@DataProvider(name = "unequalWrappers")
public Object[][] createUnequalWrappers() {
    Object[][] wrappers = new Object[][] { { new ImageReader(), new ImageReader() }, { new ImageReader(), new ImageReader() }, { new MinMaxCalculator(new ChannelSeparator(new ChannelFiller())), new MinMaxCalculator(new ChannelSeparator()) }, { new DimensionSwapper(new ChannelMerger()), new DimensionSwapper(new ChannelMerger()) } };
    for (int i = 0; i < wrappers.length; i++) {
        IFormatReader readerA = (IFormatReader) wrappers[i][0];
        IFormatReader readerB = (IFormatReader) wrappers[i][1];
        try {
            if (i != 1) {
                readerA.setId(TEST_FILE_A);
            } else {
                readerA.setId(TEST_FILE_B);
            }
            if (i > 1) {
                readerB.setId(TEST_FILE_B);
            } else if (i == 1) {
                readerB.setId(TEST_FILE_A);
            }
        } catch (FormatException e) {
            e.printStackTrace();
        } catch (IOException e) {
            e.printStackTrace();
        }
    }
    return wrappers;
}

Example 45 with ImageReader

use of loci.formats.ImageReader in project bioformats by openmicroscopy.

the class WrapperTest method createWrappers.

@DataProvider(name = "wrappers")
public Object[][] createWrappers() {
    Location.mapId(TEST_FILE, TEST_FILE);
    Object[][] wrappers = new Object[][] { { new ChannelFiller() }, { new ChannelMerger() }, { new ChannelSeparator() }, { new DimensionSwapper() }, { new FileStitcher() }, { new ImageReader() }, { new MinMaxCalculator() }, { new Memoizer() } };
    for (int i = 0; i < wrappers.length; i++) {
        IFormatReader reader = (IFormatReader) wrappers[i][0];
        try {
            reader.setId(TEST_FILE);
        } catch (FormatException e) {
            e.printStackTrace();
        } catch (IOException e) {
            e.printStackTrace();
        }
    }
    return wrappers;
}