Examples with MissingLibraryException loci.formats.MissingLibraryException used on opensource projects

Example 16 with MissingLibraryException

use of loci.formats.MissingLibraryException in project bioformats by openmicroscopy.

the class OMEXMLWriter method setId.

// -- FormatWriter API methods --
/* @see loci.formats.FormatWriter#setId(String) */
@Override
public void setId(String id) throws FormatException, IOException {
    if (id.equals(currentId)) {
        return;
    }
    super.setId(id);
    MetadataRetrieve retrieve = getMetadataRetrieve();
    String xml;
    try {
        ServiceFactory factory = new ServiceFactory();
        service = factory.getInstance(OMEXMLService.class);
        xml = service.getOMEXML(retrieve);
        OMEXMLMetadata noBin = service.createOMEXMLMetadata(xml);
        service.removeBinData(noBin);
        OMEXMLMetadataRoot root = (OMEXMLMetadataRoot) noBin.getRoot();
        root.setCreator(FormatTools.CREATOR);
        xml = service.getOMEXML(noBin);
    } catch (DependencyException de) {
        throw new MissingLibraryException(OMEXMLServiceImpl.NO_OME_XML_MSG, de);
    } catch (ServiceException se) {
        throw new FormatException(se);
    }
    xmlFragments = new ArrayList<String>();
    currentFragment = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>";
    XMLTools.parseXML(xml, new OMEHandler());
    xmlFragments.add(currentFragment);
}

Example 17 with MissingLibraryException

use of loci.formats.MissingLibraryException in project bioformats by openmicroscopy.

the class IPWReader method initPOIService.

private void initPOIService() throws FormatException, IOException {
    try {
        ServiceFactory factory = new ServiceFactory();
        poi = factory.getInstance(POIService.class);
    } catch (DependencyException de) {
        throw new MissingLibraryException("POI library not found", de);
    }
    poi.initialize(Location.getMappedId(getCurrentFile()));
}