Examples with BufferedImageReader loci.formats.gui.BufferedImageReader used on opensource projects

Example 6 with BufferedImageReader

use of loci.formats.gui.BufferedImageReader in project bioformats by openmicroscopy.

the class SumPlanes method main.

public static void main(String[] args) throws Exception {
    String id = args[0];
    BufferedImageReader r = new BufferedImageReader();
    System.out.print("Reading " + id);
    r.setId(id);
    int imageCount = r.getImageCount();
    BufferedImage[] images = new BufferedImage[imageCount];
    for (int i = 0; i < imageCount; i++) {
        System.out.print(".");
        images[i] = r.openImage(i);
    }
    r.close();
    System.out.println(" [done]");
    String outId = id + ".tif";
    BufferedImageWriter w = new BufferedImageWriter();
    System.out.print("Writing " + outId);
    w.setId(outId);
    w.saveImage(0, sum(images));
    w.close();
    System.out.println(" [done]");
}

Example 7 with BufferedImageReader

use of loci.formats.gui.BufferedImageReader in project digilib by robcast.

the class BioFormatsDocuImage method loadImage.

@Override
public void loadImage(ImageInput ii) throws FileOpException {
    logger.debug("loadImage: " + ii);
    this.input = ii;
    reader = new ImageReader();
    try {
        // construct the object that stores OME-XML metadata
        ServiceFactory factory = new ServiceFactory();
        OMEXMLService service = factory.getInstance(OMEXMLService.class);
        meta = service.createOMEXMLMetadata();
        // set up the reader and associate it with the input file
        reader = new ImageReader();
        reader.setMetadataStore(meta);
        reader.setId(ii.getFile().getAbsolutePath());
        BufferedImageReader biReader = BufferedImageReader.makeBufferedImageReader(reader);
        img = biReader.openImage(0);
        logger.debug("image loaded: " + img);
    } catch (FormatException e) {
        throw new FileOpException("Unable to load image format: " + e);
    } catch (IOException e) {
        throw new FileOpException("Unable to load image file: " + e);
    } catch (ServiceException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
    } catch (DependencyException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
    }
}