Examples with MassList net.sf.mzmine.datamodel.MassList used on opensource projects

Example 36 with MassList

use of net.sf.mzmine.datamodel.MassList in project mzmine2 by mzmine.

the class StorableScan method addMassList.

@Override
public synchronized void addMassList(@Nonnull final MassList massList) {
    // Remove all mass lists with same name, if there are any
    MassList[] currentMassLists = massLists.toArray(new MassList[0]);
    for (MassList ml : currentMassLists) {
        if (ml.getName().equals(massList.getName()))
            removeMassList(ml);
    }
    StorableMassList storedMassList;
    if (massList instanceof StorableMassList) {
        storedMassList = (StorableMassList) massList;
    } else {
        DataPoint[] massListDataPoints = massList.getDataPoints();
        try {
            int mlStorageID = rawDataFile.storeDataPoints(massListDataPoints);
            storedMassList = new StorableMassList(rawDataFile, mlStorageID, massList.getName(), this);
        } catch (IOException e) {
            logger.severe("Could not write data to temporary file " + e.toString());
            return;
        }
    }
    // Add the new mass list
    massLists.add(storedMassList);
    // Add the mass list to the tree model
    MZmineProjectImpl project = (MZmineProjectImpl) MZmineCore.getProjectManager().getCurrentProject();
    // Check if we are adding to the current project
    if (Arrays.asList(project.getDataFiles()).contains(rawDataFile)) {
        final RawDataTreeModel treeModel = project.getRawDataTreeModel();
        treeModel.addObjectWithoutGUIUpdate(storedMassList);
    }
}