Examples with PeakList net.sf.mzmine.datamodel.PeakList used on opensource projects

Example 71 with PeakList

use of net.sf.mzmine.datamodel.PeakList in project mzmine2 by mzmine.

the class ComplexSearchModule method runModule.

@Override
@Nonnull
public ExitCode runModule(@Nonnull MZmineProject project, @Nonnull ParameterSet parameters, @Nonnull Collection<Task> tasks) {
    PeakList[] peakLists = parameters.getParameter(ComplexSearchParameters.peakLists).getValue().getMatchingPeakLists();
    for (PeakList peakList : peakLists) {
        Task newTask = new ComplexSearchTask(parameters, peakList);
        tasks.add(newTask);
    }
    return ExitCode.OK;
}

Example 72 with PeakList

use of net.sf.mzmine.datamodel.PeakList in project mzmine2 by mzmine.

the class Ms2SearchModule method runModule.

@Override
@Nonnull
public ExitCode runModule(@Nonnull MZmineProject project, @Nonnull ParameterSet parameters, @Nonnull Collection<Task> tasks) {
    PeakList[] peakList1 = parameters.getParameter(Ms2SearchParameters.peakList1).getValue().getMatchingPeakLists();
    PeakList[] peakList2 = parameters.getParameter(Ms2SearchParameters.peakList2).getValue().getMatchingPeakLists();
    // Previously iterated over all the peaklists & did a separate task for each.
    // Now a single task.
    Task newTask = new Ms2SearchTask(parameters, peakList1[0], peakList2[0]);
    tasks.add(newTask);
    return ExitCode.OK;
}

Example 73 with PeakList

use of net.sf.mzmine.datamodel.PeakList in project mzmine2 by mzmine.

the class LipidSearchModule method runModule.

@Override
@Nonnull
public ExitCode runModule(@Nonnull MZmineProject project, @Nonnull ParameterSet parameters, @Nonnull Collection<Task> tasks) {
    PeakList[] peakLists = parameters.getParameter(LipidSearchParameters.peakLists).getValue().getMatchingPeakLists();
    for (PeakList peakList : peakLists) {
        Task newTask = new LipidSearchTask(parameters, peakList);
        tasks.add(newTask);
    }
    return ExitCode.OK;
}

Example 74 with PeakList

use of net.sf.mzmine.datamodel.PeakList in project mzmine2 by mzmine.

the class FormulaPredictionPeakListModule method runModule.

@Override
@Nonnull
public ExitCode runModule(@Nonnull MZmineProject project, @Nonnull ParameterSet parameters, @Nonnull Collection<Task> tasks) {
    PeakList[] peakLists = parameters.getParameter(FormulaPredictionPeakListParameters.PEAK_LISTS).getValue().getMatchingPeakLists();
    for (PeakList peakList : peakLists) {
        Task newTask = new FormulaPredictionPeakListTask(peakList, parameters);
        tasks.add(newTask);
    }
    return ExitCode.OK;
}

Example 75 with PeakList

use of net.sf.mzmine.datamodel.PeakList in project mzmine2 by mzmine.

the class IsotopePeakScannerModule method runModule.

@Override
@Nonnull
public ExitCode runModule(@Nonnull MZmineProject project, @Nonnull ParameterSet parameters, @Nonnull Collection<Task> tasks) {
    PeakList[] peakLists = parameters.getParameter(IsotopePeakScannerParameters.PEAK_LISTS).getValue().getMatchingPeakLists();
    for (PeakList peakList : peakLists) {
        Task newTask = new IsotopePeakScannerTask(project, peakList, parameters);
        tasks.add(newTask);
    }
    return ExitCode.OK;
}