Examples with Plate ome.xml.model.Plate used on opensource projects

Example 6 with Plate

use of ome.xml.model.Plate in project bioformats by openmicroscopy.

the class FileWriteSPW method export.

/**
 * Save a single byte plane of data.
 * @param plane  data
 * @param series  image no in plate
 * @param index t plane within image
 */
private void export(byte[] plane, int series, int index, String imageDescription) {
    Exception exception = null;
    if (initializationSuccess) {
        if (series != writer.getSeries()) {
            try {
                writer.setSeries(series);
            } catch (FormatException e) {
                exception = e;
            }
        }
        try {
            writer.saveBytes(index, plane);
            if (index == 0) {
                OMEXMLMetadataRoot root = (OMEXMLMetadataRoot) omexml.getRoot();
                Plate plate = root.getPlate(0);
                Image im = root.getImage(series);
                im.setDescription(imageDescription);
            }
            expectedImages[series]++;
        } catch (FormatException | IOException e) {
            exception = e;
        }
    }
    if (exception != null) {
        System.err.println("Failed to write data!");
    }
}

Example 7 with Plate

use of ome.xml.model.Plate in project bioformats by openmicroscopy.

the class BackReferenceTest method testPlateWellReferences.

@Test
public void testPlateWellReferences() {
    metadata.setPlateID("Plate:0", 0);
    metadata.setWellID("Well:0:0", 0, 0);
    OME root = (OME) metadata.getRoot();
    Plate plate = root.getPlate(0);
    Well well = plate.getWell(0);
    assertNotNull(plate);
    assertNotNull(well);
    assertEquals(plate, well.getPlate());
}