Examples with PositiveInteger ome.xml.model.primitives.PositiveInteger used on opensource projects

Example 11 with PositiveInteger

use of ome.xml.model.primitives.PositiveInteger in project bioformats by openmicroscopy.

the class OMETiffWriterTest method testGetPlaneCount.

@Test
public void testGetPlaneCount() throws IOException, FormatException {
    writer.setMetadataRetrieve(metadata);
    writer.setSeries(0);
    assertEquals(WriterUtilities.SIZE_T * WriterUtilities.SIZE_Z * WriterUtilities.SIZE_C, writer.getPlaneCount());
    metadata.setPixelsSizeC(new PositiveInteger(4), 0);
    metadata.setPixelsType(PixelType.INT16, 0);
    writer.setMetadataRetrieve(metadata);
    assertEquals(WriterUtilities.SIZE_T * WriterUtilities.SIZE_Z * 4, writer.getPlaneCount());
}

Example 12 with PositiveInteger

use of ome.xml.model.primitives.PositiveInteger in project bioformats by openmicroscopy.

the class TiffWriterTest method testGetTileSizeY.

@Test
public void testGetTileSizeY() throws IOException, FormatException {
    writer.setMetadataRetrieve(metadata);
    assertEquals(WriterUtilities.SIZE_Y, writer.getTileSizeY());
    writer.close();
    writer = new TiffWriter();
    metadata.setPixelsSizeY(new PositiveInteger(100), 0);
    writer.setMetadataRetrieve(metadata);
    assertEquals(100, writer.getTileSizeY());
}

Example 13 with PositiveInteger

use of ome.xml.model.primitives.PositiveInteger in project bioformats by openmicroscopy.

the class TiffWriterTest method testGetTileSizeX.

@Test
public void testGetTileSizeX() throws IOException, FormatException {
    writer.setMetadataRetrieve(metadata);
    assertEquals(WriterUtilities.SIZE_X, writer.getTileSizeX());
    writer.close();
    writer = new TiffWriter();
    metadata.setPixelsSizeX(new PositiveInteger(100), 0);
    writer.setMetadataRetrieve(metadata);
    assertEquals(100, writer.getTileSizeX());
}

Example 14 with PositiveInteger

use of ome.xml.model.primitives.PositiveInteger in project bioformats by openmicroscopy.

the class TiffWriterTest method testSetBigTiffAutomatic.

@Test
public void testSetBigTiffAutomatic() throws IOException, FormatException {
    // Test that no exception is thrown when bigTiff is set automatically due to size
    metadata.setPixelsSizeT(new PositiveInteger(1000), 0);
    writer.setMetadataRetrieve(metadata);
    ((TiffWriterMock) writer).createOutputBuffer(true);
    long length = 4294967296L;
    ((TiffWriterMock) writer).setBufferLength(length);
    writer.setId("test.tiff");
    writer.saveBytes(0, buf, ifd);
}

Example 15 with PositiveInteger

use of ome.xml.model.primitives.PositiveInteger in project bioformats by openmicroscopy.

the class OMETiffWriterLargeImageWidthTest method setUp.

@BeforeClass
public void setUp() throws Exception {
    target = File.createTempFile("OMETiffWriterTest", ".ome.tiff");
    ServiceFactory sf = new ServiceFactory();
    OMEXMLService service = sf.getInstance(OMEXMLService.class);
    ms = service.createOMEXMLMetadata();
    ms.setImageID("Image:1", 0);
    ms.setPixelsID("Pixels:1", 0);
    ms.setPixelsDimensionOrder(DimensionOrder.XYZCT, 0);
    ms.setPixelsSizeX(new PositiveInteger(SIZE_X), 0);
    ms.setPixelsSizeY(new PositiveInteger(SIZE_Y), 0);
    ms.setPixelsSizeZ(new PositiveInteger(SIZE_Z), 0);
    ms.setPixelsSizeC(new PositiveInteger(SIZE_C), 0);
    ms.setPixelsSizeT(new PositiveInteger(SIZE_T), 0);
    ms.setPixelsType(PixelType.UINT8, 0);
    ms.setPixelsBinDataBigEndian(true, 0, 0);
    ms.setChannelID("Channel:1", 0, 0);
    ms.setChannelSamplesPerPixel(new PositiveInteger(1), 0, 0);
}