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Example 6 with TranslatedTextBean

use of org.akaza.openclinica.bean.odmbeans.TranslatedTextBean in project OpenClinica by OpenClinica.

the class OdmExtractDAO method getBasicDefinitions.

public void getBasicDefinitions(int studyId, BasicDefinitionsBean basicDef) {
    ArrayList<MeasurementUnitBean> units = basicDef.getMeasurementUnits();
    String uprev = "";
    this.setStudyMeasurementUnitsTypesExpected();
    ArrayList rows = this.select(this.getStudyMeasurementUnitsSql(studyId));
    Iterator it = rows.iterator();
    while (it.hasNext()) {
        HashMap row = (HashMap) it.next();
        String oid = (String) row.get("mu_oid");
        String name = (String) row.get("name");
        MeasurementUnitBean u = new MeasurementUnitBean();
        SymbolBean symbol = new SymbolBean();
        ArrayList<TranslatedTextBean> texts = new ArrayList<TranslatedTextBean>();
        if (uprev.equals(oid)) {
            u = units.get(units.size() - 1);
            symbol = u.getSymbol();
            texts = symbol.getTranslatedText();
        } else {
            u.setOid(oid);
            u.setName(name);
            units.add(u);
        }
        TranslatedTextBean t = new TranslatedTextBean();
        t.setText(name);
        texts.add(t);
        symbol.setTranslatedText(texts);
        u.setSymbol(symbol);
    }
}
Also used : HashMap(java.util.HashMap) LinkedHashMap(java.util.LinkedHashMap) ArrayList(java.util.ArrayList) Iterator(java.util.Iterator) MeasurementUnitBean(org.akaza.openclinica.bean.odmbeans.MeasurementUnitBean) SymbolBean(org.akaza.openclinica.bean.odmbeans.SymbolBean) TranslatedTextBean(org.akaza.openclinica.bean.odmbeans.TranslatedTextBean)

Example 7 with TranslatedTextBean

use of org.akaza.openclinica.bean.odmbeans.TranslatedTextBean in project OpenClinica by OpenClinica.

the class MetaDataReportBean method addItemDef.

public void addItemDef(boolean isStudy, String currentIndent) {
    StringBuffer xml = this.getXmlOutput();
    String indent = this.getIndent();
    ArrayList<ItemDefBean> items = (ArrayList<ItemDefBean>) odmstudy.getMetaDataVersion().getItemDefs();
    String ODMVersion = this.getODMVersion();
    for (ItemDefBean item : items) {
        xml.append(currentIndent + "<ItemDef OID=\"" + StringEscapeUtils.escapeXml(item.getOid()) + "\" Name=\"" + StringEscapeUtils.escapeXml(item.getName()) + "\" DataType=\"" + item.getDateType() + "\"");
        int len = item.getLength();
        if (len > 0) {
            xml.append(" Length=\"" + len + "\"");
        }
        len = item.getSignificantDigits();
        if (len > 0) {
            xml.append(" SignificantDigits=\"" + len + "\"");
        }
        xml.append(" SASFieldName=\"" + this.getSasNameValidator().getValidName(item.getPreSASFieldName()) + "\"");
        if (item.getComment().length() > 0) {
            xml.append(" Comment=\"" + StringEscapeUtils.escapeXml(item.getComment()) + "\"");
        }
        if ("oc1.2".equalsIgnoreCase(ODMVersion) || "oc1.3".equalsIgnoreCase(ODMVersion)) {
            xml.append(" OpenClinica:FormOID=\"" + item.getFormOIDs() + "\"");
        }
        boolean hasNode = false;
        // add question
        TranslatedTextBean t = item.getQuestion().getQuestion();
        if (t != null && t.getText() != null && t.getText().length() > 0) {
            if (!hasNode) {
                hasNode = true;
                xml.append(">");
                xml.append(nls);
            }
            if ("oc1.3".equalsIgnoreCase(ODMVersion)) {
                String qn = item.getQuestion().getQuestionNumber();
                if (qn != null && qn.length() > 0) {
                    xml.append(currentIndent + indent + "<Question OpenClinica:QuestionNumber=\"" + item.getQuestion().getQuestionNumber() + "\">");
                } else {
                    xml.append(currentIndent + indent + "<Question>");
                }
            } else {
                xml.append(currentIndent + indent + "<Question>");
            }
            xml.append(nls);
            xml.append(currentIndent + indent + indent + "<TranslatedText>");
            xml.append(nls);
            xml.append(currentIndent + indent + indent + StringEscapeUtils.escapeXml(t.getText()));
            xml.append(nls);
            xml.append(currentIndent + indent + indent + "</TranslatedText>");
            xml.append(nls);
            xml.append(currentIndent + indent + "</Question>");
            xml.append(nls);
        }
        // add MeasurementUnitRef
        String muRefOid = item.getMeasurementUnitRef().getElementDefOID();
        if (muRefOid != null && muRefOid.length() > 0) {
            if (!hasNode) {
                hasNode = true;
                xml.append(">");
                xml.append(nls);
            }
            xml.append(currentIndent + indent + this.measurementUnitRefString(muRefOid));
            xml.append(nls);
        }
        // add RangeCheck
        if (item.getRangeCheck() != null) {
            ArrayList<RangeCheckBean> rcs = (ArrayList<RangeCheckBean>) item.getRangeCheck();
            for (RangeCheckBean rc : rcs) {
                if (rc.getComparator().length() > 0) {
                    if (!hasNode) {
                        hasNode = true;
                        xml.append(">");
                        xml.append(nls);
                    }
                    xml.append(currentIndent + indent + "<RangeCheck Comparator=\"" + StringEscapeUtils.escapeXml(rc.getComparator()) + "\" SoftHard=\"" + rc.getSoftHard() + "\">");
                    xml.append(nls);
                    xml.append(currentIndent + indent + indent + "<CheckValue>" + StringEscapeUtils.escapeXml(rc.getCheckValue()) + "</CheckValue>");
                    xml.append(nls);
                    // supported
                    if (muRefOid != null && muRefOid.length() > 0) {
                        xml.append(currentIndent + indent + indent + this.measurementUnitRefString(muRefOid));
                        xml.append(nls);
                    }
                    xml.append(currentIndent + indent + indent + "<ErrorMessage><TranslatedText>" + StringEscapeUtils.escapeXml(rc.getErrorMessage().getText()) + "</TranslatedText></ErrorMessage>");
                    xml.append(nls);
                    xml.append(currentIndent + indent + "</RangeCheck>");
                    xml.append(nls);
                }
            }
        }
        // add CodeListRef
        String clOid = item.getCodeListOID();
        if (clOid != null && clOid.length() > 0) {
            if (!hasNode) {
                hasNode = true;
                xml.append(">");
                xml.append(nls);
            }
            xml.append(currentIndent + indent + "<CodeListRef CodeListOID=\"" + StringEscapeUtils.escapeXml(clOid) + "\"/>");
            xml.append(nls);
        }
        // add MultiSelectListRef
        if ("oc1.2".equalsIgnoreCase(ODMVersion) || "oc1.3".equalsIgnoreCase(ODMVersion)) {
            if (item.getMultiSelectListRef() != null) {
                String mslOid = item.getMultiSelectListRef().getElementDefOID();
                if (mslOid != null && mslOid.length() > 0) {
                    if (!hasNode) {
                        hasNode = true;
                        xml.append(">");
                        xml.append(nls);
                    }
                    // xml.append(currentIndent + indent +
                    // "<OpenClinica:MultiSelectListRef OpenClinica:MultiSelectListID=\""
                    xml.append(currentIndent + indent + "<OpenClinica:MultiSelectListRef MultiSelectListID=\"" + StringEscapeUtils.escapeXml(mslOid) + "\"/>");
                    xml.append(nls);
                }
            }
        }
        // add ItemDetails for oc1.3
        if ("oc1.3".equals(ODMVersion)) {
            if (!hasNode) {
                hasNode = true;
                xml.append(">");
                xml.append(nls);
            }
        // this.addItemDetails(item.getItemDetails(), currentIndent + indent);
        }
        if (hasNode) {
            xml.append(currentIndent + "</ItemDef>");
            xml.append(nls);
            hasNode = false;
        } else {
            xml.append("/>");
            xml.append(nls);
        }
    }
}
Also used : RangeCheckBean(org.akaza.openclinica.bean.odmbeans.RangeCheckBean) ArrayList(java.util.ArrayList) ItemDefBean(org.akaza.openclinica.bean.odmbeans.ItemDefBean) TranslatedTextBean(org.akaza.openclinica.bean.odmbeans.TranslatedTextBean)

Example 8 with TranslatedTextBean

use of org.akaza.openclinica.bean.odmbeans.TranslatedTextBean in project OpenClinica by OpenClinica.

the class MetaDataReportBean method addCodeList.

public void addCodeList(String currentIndent) {
    StringBuffer xml = this.getXmlOutput();
    String indent = this.getIndent();
    if (odmstudy.getMetaDataVersion().getCodeLists() != null) {
        ArrayList<CodeListBean> cls = (ArrayList<CodeListBean>) odmstudy.getMetaDataVersion().getCodeLists();
        if (cls.size() > 0) {
            for (CodeListBean cl : cls) {
                boolean isString = cl.getDataType().equalsIgnoreCase("text") ? true : false;
                xml.append(currentIndent + "<CodeList OID=\"" + StringEscapeUtils.escapeXml(cl.getOid()) + "\" Name=\"" + StringEscapeUtils.escapeXml(cl.getName()) + "\" DataType=\"" + cl.getDataType() + "\" SASFormatName=\"" + this.getSasFormValidator().getValidSASFormatName(cl.getName(), isString) + "\">");
                xml.append(nls);
                ArrayList<CodeListItemBean> clis = (ArrayList<CodeListItemBean>) cl.getCodeListItems();
                if (clis != null && clis.size() > 0) {
                    for (CodeListItemBean cli : clis) {
                        xml.append(currentIndent + indent + "<CodeListItem CodedValue=\"" + StringEscapeUtils.escapeXml(cli.getCodedVale()) + "\">");
                        xml.append(nls);
                        xml.append(currentIndent + indent + indent + "<Decode>");
                        xml.append(nls);
                        TranslatedTextBean tt = cli.getDecode();
                        if (tt.getXmlLang().length() > 0) {
                            xml.append(currentIndent + indent + indent + indent + "<TranslatedText xml:lang=\"" + tt.getXmlLang() + "\">" + StringEscapeUtils.escapeXml(cli.getDecode().getText()) + "</TranslatedText>");
                        } else {
                            xml.append(currentIndent + indent + indent + indent + "<TranslatedText>" + StringEscapeUtils.escapeXml(cli.getDecode().getText()) + "</TranslatedText>");
                        }
                        xml.append(nls);
                        xml.append(currentIndent + indent + indent + "</Decode>");
                        xml.append(nls);
                        xml.append(currentIndent + indent + "</CodeListItem>");
                        xml.append(nls);
                    }
                }
                xml.append(currentIndent + "</CodeList>");
                xml.append(nls);
            }
        }
    }
}
Also used : CodeListBean(org.akaza.openclinica.bean.odmbeans.CodeListBean) ArrayList(java.util.ArrayList) CodeListItemBean(org.akaza.openclinica.bean.odmbeans.CodeListItemBean) TranslatedTextBean(org.akaza.openclinica.bean.odmbeans.TranslatedTextBean)

Aggregations

TranslatedTextBean (org.akaza.openclinica.bean.odmbeans.TranslatedTextBean)8 ArrayList (java.util.ArrayList)7 HashMap (java.util.HashMap)4 Iterator (java.util.Iterator)4 LinkedHashMap (java.util.LinkedHashMap)4 CodeListBean (org.akaza.openclinica.bean.odmbeans.CodeListBean)3 CodeListItemBean (org.akaza.openclinica.bean.odmbeans.CodeListItemBean)3 ItemDefBean (org.akaza.openclinica.bean.odmbeans.ItemDefBean)3 MultiSelectListBean (org.akaza.openclinica.bean.odmbeans.MultiSelectListBean)3 MultiSelectListItemBean (org.akaza.openclinica.bean.odmbeans.MultiSelectListItemBean)3 SymbolBean (org.akaza.openclinica.bean.odmbeans.SymbolBean)3 HashSet (java.util.HashSet)2 ElementRefBean (org.akaza.openclinica.bean.odmbeans.ElementRefBean)2 FormDefBean (org.akaza.openclinica.bean.odmbeans.FormDefBean)2 ItemGroupDefBean (org.akaza.openclinica.bean.odmbeans.ItemGroupDefBean)2 MeasurementUnitBean (org.akaza.openclinica.bean.odmbeans.MeasurementUnitBean)2 MetaDataVersionProtocolBean (org.akaza.openclinica.bean.odmbeans.MetaDataVersionProtocolBean)1 RangeCheckBean (org.akaza.openclinica.bean.odmbeans.RangeCheckBean)1 StudyEventDefBean (org.akaza.openclinica.bean.odmbeans.StudyEventDefBean)1