Examples with ItemGroupMetadataBean org.akaza.openclinica.bean.submit.ItemGroupMetadataBean used on opensource projects

Example 26 with ItemGroupMetadataBean

use of org.akaza.openclinica.bean.submit.ItemGroupMetadataBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method showNew.

public void showNew(Integer itemDataId, List<PropertyBean> properties, UserAccountBean ub, RuleSetBean ruleSet) {
    ItemDataBean itemDataBeanA = (ItemDataBean) getItemDataDAO().findByPK(itemDataId);
    EventCRFBean eventCrfBeanA = (EventCRFBean) getEventCRFDAO().findByPK(itemDataBeanA.getEventCRFId());
    ItemGroupMetadataBean itemGroupMetadataBeanA = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemDataBeanA.getItemId(), eventCrfBeanA.getCRFVersionId());
    Boolean isGroupARepeating = isGroupRepeating(itemGroupMetadataBeanA);
    String itemGroupAOrdinal = getExpressionService().getGroupOrdninalCurated(ruleSet.getTarget().getValue());
    for (PropertyBean propertyBean : properties) {
        String oid = propertyBean.getOid();
        ItemOrItemGroupHolder itemOrItemGroup = getItemOrItemGroup(oid);
        // OID is an item
        if (itemOrItemGroup.getItemBean() != null) {
            String expression = getExpressionService().constructFullExpressionIfPartialProvided(propertyBean.getOid(), ruleSet.getTarget().getValue());
            ItemBean itemBeanB = getExpressionService().getItemBeanFromExpression(expression);
            ItemGroupBean itemGroupBeanB = getExpressionService().getItemGroupExpression(expression);
            EventCRFBean eventCrfBeanB = eventCrfBeanA;
            ItemGroupMetadataBean itemGroupMetadataBeanB = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemBeanB.getId(), eventCrfBeanB.getCRFVersionId());
            Boolean isGroupBRepeating = isGroupRepeating(itemGroupMetadataBeanB);
            String itemGroupBOrdinal = getExpressionService().getGroupOrdninalCurated(expression);
            List<ItemDataBean> itemDataBeans = new ArrayList<ItemDataBean>();
            // If A and B are both non repeating groups
            if (!isGroupARepeating && !isGroupBRepeating) {
                ItemDataBean oidBasedItemData = oneToOne(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, 1);
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is not repeating group & B is a repeating group with no index selected
            if (!isGroupARepeating && isGroupBRepeating && itemGroupBOrdinal.equals("")) {
                List<ItemDataBean> oidBasedItemDatas = oneToMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub);
                itemDataBeans.addAll(oidBasedItemDatas);
            }
            // If A is not repeating group & B is a repeating group with index selected
            if (!isGroupARepeating && isGroupBRepeating && !itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupBOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is repeating group with index & B is a repeating group with index selected
            if (isGroupARepeating && isGroupBRepeating && !itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupBOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is repeating group with index & B is a repeating group with no index selected
            if (isGroupARepeating && isGroupBRepeating && itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupAOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            logger.debug("** found item data beans: " + itemDataBeans.toString());
            for (ItemDataBean oidBasedItemData : itemDataBeans) {
                ItemFormMetadataBean itemFormMetadataBean = getItemFormMetadataDAO().findByItemIdAndCRFVersionId(itemBeanB.getId(), eventCrfBeanB.getCRFVersionId());
                DynamicsItemFormMetadataBean dynamicsMetadataBean = getDynamicsItemFormMetadataBean(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
                if (dynamicsMetadataBean == null) {
                    showItem(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
                // itemsAlreadyShown.add(new Integer(oidBasedItemData.getId()));
                } else if (dynamicsMetadataBean != null && !dynamicsMetadataBean.isShowItem()) {
                    dynamicsMetadataBean.setShowItem(true);
                    getDynamicsItemFormMetadataDao().saveOrUpdate(dynamicsMetadataBean);
                // itemsAlreadyShown.add(new Integer(oidBasedItemData.getId()));
                } else if (eventCrfBeanA.getStage().equals(DataEntryStage.DOUBLE_DATA_ENTRY)) {
                    logger.debug("hit DDE here: idb " + oidBasedItemData.getId());
                    // need a guard clause to guarantee DDE
                    // if we get there, it means that we've hit DDE and the bean exists
                    //setVersion(1);// version 1 = passed DDE
                    dynamicsMetadataBean.setPassedDde(1);
                    getDynamicsItemFormMetadataDao().saveOrUpdate(dynamicsMetadataBean);
                }
            }
        } else // OID is a group
        {
            logger.debug("found item group id 1 " + oid);
            ItemGroupBean itemGroupBean = itemOrItemGroup.getItemGroupBean();
            ArrayList sectionBeans = getSectionDAO().findAllByCRFVersionId(eventCrfBeanA.getCRFVersionId());
            for (int i = 0; i < sectionBeans.size(); i++) {
                SectionBean sectionBean = (SectionBean) sectionBeans.get(i);
                // System.out.println("found section " + sectionBean.getId());
                List<ItemGroupMetadataBean> itemGroupMetadataBeans = getItemGroupMetadataDAO().findMetaByGroupAndSection(itemGroupBean.getId(), eventCrfBeanA.getCRFVersionId(), sectionBean.getId());
                for (ItemGroupMetadataBean itemGroupMetadataBean : itemGroupMetadataBeans) {
                    if (itemGroupMetadataBean.getItemGroupId() == itemGroupBean.getId()) {
                        // System.out.println("found item group id 2 " + oid);
                        DynamicsItemGroupMetadataBean dynamicsGroupBean = getDynamicsItemGroupMetadataBean(itemGroupMetadataBean, eventCrfBeanA);
                        if (dynamicsGroupBean == null) {
                            showGroup(itemGroupMetadataBean, eventCrfBeanA);
                        } else if (dynamicsGroupBean != null && !dynamicsGroupBean.isShowGroup()) {
                            dynamicsGroupBean.setShowGroup(true);
                            getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsGroupBean);
                        } else if (eventCrfBeanA.getStage().equals(DataEntryStage.DOUBLE_DATA_ENTRY)) {
                            //setVersion(1); // version 1 = passed DDE
                            dynamicsGroupBean.setPassedDde(1);
                            getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsGroupBean);
                        }
                    }
                }
            }
        }
    }
}

Example 27 with ItemGroupMetadataBean

use of org.akaza.openclinica.bean.submit.ItemGroupMetadataBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method isGroupShown.

public boolean isGroupShown(int metadataId, int eventCrfBeanId) throws OpenClinicaException {
    ItemGroupMetadataBean itemGroupMetadataBean = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByPK(metadataId);
    DynamicsItemGroupMetadataBean dynamicsMetadataBean = getDynamicsItemGroupMetadataBean(itemGroupMetadataBean, eventCrfBeanId);
    if (dynamicsMetadataBean != null) {
        return dynamicsMetadataBean.isShowGroup();
    } else {
        // System.out.println("didnt find a group row in the db ");
        return false;
    }
}

Example 28 with ItemGroupMetadataBean

use of org.akaza.openclinica.bean.submit.ItemGroupMetadataBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method hideGroup.

public boolean hideGroup(ItemGroupMetadataBean metadataBean, EventCRFBean eventCrfBean) {
    ItemGroupMetadataBean itemGroupMetadataBean = metadataBean;
    itemGroupMetadataBean.setShowGroup(false);
    DynamicsItemGroupMetadataBean dynamicsMetadataBean = new DynamicsItemGroupMetadataBean(itemGroupMetadataBean, eventCrfBean);
    dynamicsMetadataBean.setPassedDde(0);
    getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsMetadataBean);
    return true;
}

Example 29 with ItemGroupMetadataBean

use of org.akaza.openclinica.bean.submit.ItemGroupMetadataBean in project OpenClinica by OpenClinica.

the class CRFVersionMetadataUtil method retrieveFormMetadata.

/**
     * Builds and returns an ArrayList of SectionBeans that comprise the metadata of a CRFVersion.
     */
public ArrayList<SectionBean> retrieveFormMetadata(FormLayoutBean formLayout) throws Exception {
    ItemDAO idao = new ItemDAO(dataSource);
    ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO(dataSource);
    // tbh, 102007
    SectionDAO sdao = new SectionDAO(dataSource);
    ItemGroupDAO igdao = new ItemGroupDAO(dataSource);
    ItemGroupMetadataDAO igmdao = new ItemGroupMetadataDAO(dataSource);
    ArrayList sections = (ArrayList) sdao.findByLayoutId(formLayout.getId());
    HashMap versionMap = new HashMap();
    for (int i = 0; i < sections.size(); i++) {
        SectionBean section = (SectionBean) sections.get(i);
        versionMap.put(new Integer(section.getId()), section.getItems());
        // YW 08-21-2007, add group metadata
        ArrayList<ItemGroupBean> igs = (ArrayList<ItemGroupBean>) igdao.findGroupByLayoutId(formLayout.getId());
        for (int j = 0; j < igs.size(); ++j) {
            ArrayList<ItemGroupMetadataBean> igms = (ArrayList<ItemGroupMetadataBean>) igmdao.findMetaByGroupAndSection(igs.get(j).getId(), section.getCRFVersionId(), section.getId());
            if (!igms.isEmpty()) {
                // Note, the following logic has been adapted here -
                // "for a given crf version,
                // all the items in the same group have the same group
                // metadata
                // so we can get one of them and set metadata for the
                // group"
                igs.get(j).setMeta(igms.get(0));
                igs.get(j).setItemGroupMetaBeans(igms);
            }
        }
        ((SectionBean) sections.get(i)).setGroups(igs);
    // YW >>
    }
    ArrayList items = idao.findAllItemsByLayoutId(formLayout.getId());
    // then different query will be used
    if (igmdao.versionIncluded(formLayout.getId())) {
        for (int i = 0; i < items.size(); i++) {
            ItemBean item = (ItemBean) items.get(i);
            ItemFormMetadataBean ifm = ifmdao.findByItemIdAndFormLayoutId(item.getId(), formLayout.getId());
            item.setItemMeta(ifm);
            // logger.info("option******" +
            // ifm.getResponseSet().getOptions().size());
            ArrayList its = (ArrayList) versionMap.get(new Integer(ifm.getSectionId()));
            its.add(item);
        }
    } else {
        for (int i = 0; i < items.size(); i++) {
            ItemBean item = (ItemBean) items.get(i);
            ItemFormMetadataBean ifm = ifmdao.findByItemIdAndFormLayoutIdNotInIGM(item.getId(), formLayout.getId());
            item.setItemMeta(ifm);
            // logger.info("option******" +
            // ifm.getResponseSet().getOptions().size());
            ArrayList its = (ArrayList) versionMap.get(new Integer(ifm.getSectionId()));
            its.add(item);
        }
    }
    for (int i = 0; i < sections.size(); i++) {
        SectionBean section = (SectionBean) sections.get(i);
        section.setItems((ArrayList) versionMap.get(new Integer(section.getId())));
    }
    return sections;
}

Example 30 with ItemGroupMetadataBean

use of org.akaza.openclinica.bean.submit.ItemGroupMetadataBean in project OpenClinica by OpenClinica.

the class ResolveDiscrepancyServlet method prepareRequestForResolution.

public boolean prepareRequestForResolution(HttpServletRequest request, DataSource ds, StudyBean currentStudy, DiscrepancyNoteBean note, boolean isCompleted) throws Exception {
    String entityType = note.getEntityType().toLowerCase();
    int id = note.getEntityId();
    if ("subject".equalsIgnoreCase(entityType)) {
        StudySubjectDAO ssdao = new StudySubjectDAO(ds);
        StudySubjectBean ssb = ssdao.findBySubjectIdAndStudy(id, currentStudy);
        request.setAttribute("action", "show");
        request.setAttribute("id", String.valueOf(note.getEntityId()));
        request.setAttribute("studySubId", String.valueOf(ssb.getId()));
    } else if ("studysub".equalsIgnoreCase(entityType)) {
        request.setAttribute("action", "show");
        request.setAttribute("id", String.valueOf(note.getEntityId()));
    } else if ("eventcrf".equalsIgnoreCase(entityType)) {
        request.setAttribute("editInterview", "1");
        EventCRFDAO ecdao = new EventCRFDAO(ds);
        EventCRFBean ecb = (EventCRFBean) ecdao.findByPK(id);
        request.setAttribute(TableOfContentsServlet.INPUT_EVENT_CRF_BEAN, ecb);
        // If the request is passed along to ViewSectionDataEntryServlet,
        // that code needs
        // an event crf id; the (ecb.getId()+"") is necessary because
        // FormProcessor throws
        // a ClassCastException without the casting to a String
        request.setAttribute(ViewSectionDataEntryServlet.EVENT_CRF_ID, ecb.getId() + "");
    } else if ("studyevent".equalsIgnoreCase(entityType)) {
        StudyEventDAO sedao = new StudyEventDAO(ds);
        StudyEventBean seb = (StudyEventBean) sedao.findByPK(id);
        request.setAttribute(EnterDataForStudyEventServlet.INPUT_EVENT_ID, String.valueOf(id));
        request.setAttribute(UpdateStudyEventServlet.EVENT_ID, String.valueOf(id));
        request.setAttribute(UpdateStudyEventServlet.STUDY_SUBJECT_ID, String.valueOf(seb.getStudySubjectId()));
    } else // this is for item data
    if ("itemdata".equalsIgnoreCase(entityType)) {
        ItemDataDAO iddao = new ItemDataDAO(ds);
        ItemDAO idao = new ItemDAO(ds);
        ItemDataBean idb = (ItemDataBean) iddao.findByPK(id);
        ItemBean item = (ItemBean) idao.findByPK(idb.getItemId());
        ItemGroupMetadataDAO igmdao = new ItemGroupMetadataDAO<>(ds);
        EventCRFDAO ecdao = new EventCRFDAO(ds);
        EventCRFBean ecb = (EventCRFBean) ecdao.findByPK(idb.getEventCRFId());
        FormLayoutDAO fldao = new FormLayoutDAO(ds);
        FormLayoutBean formLayout = (FormLayoutBean) fldao.findByPK(ecb.getFormLayoutId());
        StudyEventDAO sedao = new StudyEventDAO(ds);
        StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
        StudySubjectBean ssb = (StudySubjectBean) ssdao.findByPK(ecb.getStudySubjectId());
        ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO(ds);
        ItemFormMetadataBean ifmb = ifmdao.findByItemIdAndCRFVersionId(idb.getItemId(), ecb.getFormLayoutId());
        ItemGroupMetadataBean igmBean = (ItemGroupMetadataBean) igmdao.findByItemAndCrfVersion(idb.getItemId(), ecb.getCRFVersionId());
        ItemGroupDAO igdao = new ItemGroupDAO<>(ds);
        ItemGroupBean igBean = (ItemGroupBean) igdao.findByPK(igmBean.getItemGroupId());
        int repeatOrdinal = idb.getOrdinal();
        ItemDataBean idata = null;
        if (idb != null && idb.isDeleted()) {
            return false;
        }
        if (igmBean.isRepeatingGroup() && repeatOrdinal > 1) {
            List<ItemGroupMetadataBean> igms = igmdao.findMetaByGroupAndCrfVersion(igBean.getId(), ecb.getCRFVersionId());
            for (int i = 0; i < idb.getOrdinal(); i++) {
                for (ItemGroupMetadataBean igm : igms) {
                    idata = iddao.findByItemIdAndEventCRFIdAndOrdinal(igm.getItemId(), ecb.getId(), i + 1);
                    if (idata != null && idata.isDeleted()) {
                        repeatOrdinal--;
                        break;
                    }
                }
            }
        }
        EnketoUrlService enketoUrlService = (EnketoUrlService) SpringServletAccess.getApplicationContext(context).getBean("enketoUrlService");
        StudyEventBean seb = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
        // Cache the subject context for use during xform submission
        PFormCache cache = PFormCache.getInstance(context);
        PFormCacheSubjectContextEntry subjectContext = new PFormCacheSubjectContextEntry();
        subjectContext.setStudySubjectOid(ssb.getOid());
        subjectContext.setStudyEventDefinitionId(seb.getStudyEventDefinitionId());
        subjectContext.setOrdinal(seb.getSampleOrdinal());
        subjectContext.setFormLayoutOid(formLayout.getOid());
        subjectContext.setUserAccountId(ub.getId());
        subjectContext.setItemName(item.getName() + COMMENT);
        subjectContext.setItemRepeatOrdinal(repeatOrdinal);
        subjectContext.setItemInRepeatingGroup(igmBean.isRepeatingGroup());
        subjectContext.setItemRepeatGroupName(igBean.getLayoutGroupPath());
        String contextHash = cache.putSubjectContext(subjectContext);
        String formUrl = null;
        if (ecb.getId() > 0) {
            formUrl = enketoUrlService.getEditUrl(contextHash, subjectContext, currentStudy.getOid(), null, null, QUERY_FLAVOR);
        } else {
            formUrl = enketoUrlService.getInitialDataEntryUrl(contextHash, subjectContext, currentStudy.getOid(), QUERY_FLAVOR);
        }
        int hashIndex = formUrl.lastIndexOf("#");
        String part1 = formUrl;
        String part2 = "";
        if (hashIndex != -1) {
            part1 = formUrl.substring(0, hashIndex);
            part2 = formUrl.substring(hashIndex);
        }
        request.setAttribute(EnketoFormServlet.FORM_URL1, part1);
        request.setAttribute(EnketoFormServlet.FORM_URL2, part2);
    }
    return true;
}