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Example 56 with OpenClinicaSystemException

use of org.akaza.openclinica.exception.OpenClinicaSystemException in project OpenClinica by OpenClinica.

the class BeanPropertyRuleRunner method runRules.

public void runRules(List<RuleSetBean> ruleSets, DataSource ds, BeanPropertyService beanPropertyService, StudyEventDao studyEventDaoHib, StudyEventDefinitionDao studyEventDefDaoHib, StudyEventChangeDetails changeDetails, Integer userId, JavaMailSenderImpl mailSender) {
    for (RuleSetBean ruleSet : ruleSets) {
        List<ExpressionBean> expressions = ruleSet.getExpressions();
        for (ExpressionBean expressionBean : expressions) {
            ruleSet.setTarget(expressionBean);
            StudyEvent studyEvent = studyEventDaoHib.findByStudyEventId(Integer.valueOf(getExpressionService().getStudyEventDefenitionOrdninalCurated(ruleSet.getTarget().getValue())));
            int eventOrdinal = studyEvent.getSampleOrdinal();
            int studySubjectBeanId = studyEvent.getStudySubject().getStudySubjectId();
            List<RuleSetRuleBean> ruleSetRules = ruleSet.getRuleSetRules();
            for (RuleSetRuleBean ruleSetRule : ruleSetRules) {
                Object result = null;
                if (ruleSetRule.getStatus() == Status.AVAILABLE) {
                    RuleBean rule = ruleSetRule.getRuleBean();
                    //       StudyBean currentStudy = rule.getStudy();//TODO:Fix me!
                    StudyDAO sdao = new StudyDAO(ds);
                    StudyBean currentStudy = (StudyBean) sdao.findByPK(rule.getStudyId());
                    ExpressionBeanObjectWrapper eow = new ExpressionBeanObjectWrapper(ds, currentStudy, rule.getExpression(), ruleSet, studySubjectBeanId, studyEventDaoHib, studyEventDefDaoHib);
                    try {
                        // StopWatch sw = new StopWatch();
                        ExpressionObjectWrapper ew = new ExpressionObjectWrapper(ds, currentStudy, rule.getExpression(), ruleSet);
                        ew.setStudyEventDaoHib(studyEventDaoHib);
                        ew.setStudySubjectId(studySubjectBeanId);
                        ew.setExpressionContext(ExpressionObjectWrapper.CONTEXT_EXPRESSION);
                        OpenClinicaExpressionParser oep = new OpenClinicaExpressionParser(ew);
                        // eow.setUserAccountBean(ub);
                        eow.setStudyBean(currentStudy);
                        result = oep.parseAndEvaluateExpression(rule.getExpression().getValue());
                        // sw.stop();
                        logger.debug("Rule Expression Evaluation Result: " + result);
                        // Actions
                        List<RuleActionBean> actionListBasedOnRuleExecutionResult = ruleSetRule.getActions(result.toString());
                        for (RuleActionBean ruleActionBean : actionListBasedOnRuleExecutionResult) {
                            // ActionProcessor ap =ActionProcessorFacade.getActionProcessor(ruleActionBean.getActionType(), ds, null, null,ruleSet, null, ruleActionBean.getRuleSetRule());
                            if (ruleActionBean instanceof EventActionBean) {
                                beanPropertyService.runAction(ruleActionBean, eow, userId, changeDetails.getRunningInTransaction());
                            } else if (ruleActionBean instanceof NotificationActionBean) {
                                notificationActionProcessor = new NotificationActionProcessor(ds, mailSender, ruleSetRule);
                                notificationActionProcessor.runNotificationAction(ruleActionBean, ruleSet, studySubjectBeanId, eventOrdinal);
                            }
                        }
                    } catch (OpenClinicaSystemException osa) {
                        // 	osa.printStackTrace();
                        logger.error("Rule Runner received exception: " + osa.getMessage());
                        logger.error(ExceptionUtils.getStackTrace(osa));
                    // TODO: report something useful
                    }
                }
            }
        //     	}
        }
    }
}
Also used : RuleActionBean(org.akaza.openclinica.domain.rule.action.RuleActionBean) RuleSetRuleBean(org.akaza.openclinica.domain.rule.RuleSetRuleBean) NotificationActionBean(org.akaza.openclinica.domain.rule.action.NotificationActionBean) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) ExpressionBeanObjectWrapper(org.akaza.openclinica.domain.rule.expression.ExpressionBeanObjectWrapper) OpenClinicaSystemException(org.akaza.openclinica.exception.OpenClinicaSystemException) ExpressionBean(org.akaza.openclinica.domain.rule.expression.ExpressionBean) OpenClinicaExpressionParser(org.akaza.openclinica.logic.expressionTree.OpenClinicaExpressionParser) EventActionBean(org.akaza.openclinica.domain.rule.action.EventActionBean) ExpressionObjectWrapper(org.akaza.openclinica.domain.rule.expression.ExpressionObjectWrapper) NotificationActionProcessor(org.akaza.openclinica.domain.rule.action.NotificationActionProcessor) StudyEvent(org.akaza.openclinica.domain.datamap.StudyEvent) StudyDAO(org.akaza.openclinica.dao.managestudy.StudyDAO) RuleSetBean(org.akaza.openclinica.domain.rule.RuleSetBean) RuleBean(org.akaza.openclinica.domain.rule.RuleBean) RuleSetRuleBean(org.akaza.openclinica.domain.rule.RuleSetRuleBean)

Example 57 with OpenClinicaSystemException

use of org.akaza.openclinica.exception.OpenClinicaSystemException in project OpenClinica by OpenClinica.

the class Key method runRulesBulkOLD.

@Deprecated
public HashMap<RuleBulkExecuteContainer, HashMap<RuleBulkExecuteContainerTwo, Set<String>>> runRulesBulkOLD(List<RuleSetBean> ruleSets, ExecutionMode executionMode, StudyBean currentStudy, HashMap<String, String> variableAndValue, UserAccountBean ub) {
    if (variableAndValue == null || variableAndValue.isEmpty()) {
        logger.warn("You must be executing Rules in Batch");
        variableAndValue = new HashMap<String, String>();
    }
    HashMap<RuleBulkExecuteContainer, HashMap<RuleBulkExecuteContainerTwo, Set<String>>> crfViewSpecificOrderedObjects = new HashMap<RuleBulkExecuteContainer, HashMap<RuleBulkExecuteContainerTwo, Set<String>>>();
    for (RuleSetBean ruleSet : ruleSets) {
        for (ExpressionBean expressionBean : ruleSet.getExpressions()) {
            ruleSet.setTarget(expressionBean);
            for (RuleSetRuleBean ruleSetRule : ruleSet.getRuleSetRules()) {
                String result = null;
                RuleBean rule = ruleSetRule.getRuleBean();
                ExpressionObjectWrapper eow = new ExpressionObjectWrapper(ds, currentStudy, rule.getExpression(), ruleSet, variableAndValue);
                try {
                    OpenClinicaExpressionParser oep = new OpenClinicaExpressionParser(eow);
                    result = (String) oep.parseAndEvaluateExpression(rule.getExpression().getValue());
                    // Actions
                    List<RuleActionBean> actionListBasedOnRuleExecutionResult = ruleSetRule.getActions(result, Phase.BATCH);
                    ItemDataBean itemData = getExpressionService().getItemDataBeanFromDb(ruleSet.getTarget().getValue());
                    if (itemData != null) {
                        Iterator<RuleActionBean> itr = actionListBasedOnRuleExecutionResult.iterator();
                        while (itr.hasNext()) {
                            RuleActionBean ruleActionBean = itr.next();
                            RuleActionRunLogBean ruleActionRunLog = new RuleActionRunLogBean(ruleActionBean.getActionType(), itemData, itemData.getValue(), ruleSetRule.getRuleBean().getOid());
                            if (getRuleActionRunLogDao().findCountByRuleActionRunLogBean(ruleActionRunLog) > 0) {
                                itr.remove();
                            }
                        }
                    }
                    List<RuleActionBean> actionBeansToShow = new ArrayList<RuleActionBean>();
                    if (actionListBasedOnRuleExecutionResult.size() > 0) {
                        //if (!dryRun) {
                        for (RuleActionBean ruleAction : actionListBasedOnRuleExecutionResult) {
                            ruleAction.setCuratedMessage(curateMessage(ruleAction, ruleSetRule));
                            // getDiscrepancyNoteService().saveFieldNotes(ruleAction.getSummary(), itemDataBeanId, "ItemData", currentStudy, ub);
                            ActionProcessor ap = ActionProcessorFacade.getActionProcessor(ruleAction.getActionType(), ds, getMailSender(), dynamicsMetadataService, ruleSet, getRuleActionRunLogDao(), ruleSetRule);
                            RuleActionBean rab = ap.execute(RuleRunnerMode.RULSET_BULK, executionMode, ruleAction, itemData, DiscrepancyNoteBean.ITEM_DATA, currentStudy, ub, prepareEmailContents(ruleSet, ruleSetRule, currentStudy, ruleAction));
                            if (rab != null) {
                                actionBeansToShow.add(ruleAction);
                            }
                        }
                        if (actionBeansToShow.size() > 0) {
                            crfViewSpecificOrderedObjects = populateForCrfBasedRulesView(crfViewSpecificOrderedObjects, ruleSet, rule, result, currentStudy, actionBeansToShow);
                        }
                    }
                } catch (OpenClinicaSystemException osa) {
                    String errorMessage = "RuleSet with target  : " + ruleSet.getTarget().getValue() + " , Ran Rule : " + rule.getName() + " , It resulted in an error due to : " + osa.getMessage();
                    // log error
                    logger.warn(errorMessage);
                }
            }
        }
    }
    logCrfViewSpecificOrderedObjects(crfViewSpecificOrderedObjects);
    return crfViewSpecificOrderedObjects;
}
Also used : RuleActionBean(org.akaza.openclinica.domain.rule.action.RuleActionBean) HashSet(java.util.HashSet) Set(java.util.Set) HashMap(java.util.HashMap) RuleSetRuleBean(org.akaza.openclinica.domain.rule.RuleSetRuleBean) ArrayList(java.util.ArrayList) OpenClinicaSystemException(org.akaza.openclinica.exception.OpenClinicaSystemException) ExpressionBean(org.akaza.openclinica.domain.rule.expression.ExpressionBean) RuleBulkExecuteContainerTwo(org.akaza.openclinica.domain.rule.RuleBulkExecuteContainerTwo) OpenClinicaExpressionParser(org.akaza.openclinica.logic.expressionTree.OpenClinicaExpressionParser) RuleActionRunLogBean(org.akaza.openclinica.domain.rule.action.RuleActionRunLogBean) ItemDataBean(org.akaza.openclinica.bean.submit.ItemDataBean) ExpressionObjectWrapper(org.akaza.openclinica.domain.rule.expression.ExpressionObjectWrapper) RuleBulkExecuteContainer(org.akaza.openclinica.domain.rule.RuleBulkExecuteContainer) ActionProcessor(org.akaza.openclinica.domain.rule.action.ActionProcessor) RuleSetBean(org.akaza.openclinica.domain.rule.RuleSetBean) RuleBean(org.akaza.openclinica.domain.rule.RuleBean) RuleSetRuleBean(org.akaza.openclinica.domain.rule.RuleSetRuleBean)

Example 58 with OpenClinicaSystemException

use of org.akaza.openclinica.exception.OpenClinicaSystemException in project OpenClinica by OpenClinica.

the class XsltTransformJob method sendErrorEmail.

private void sendErrorEmail(String message, JobExecutionContext context, String target) {
    String subject = "Warning: " + message;
    String emailBody = "An exception was thrown while running an extract job on your server, please see the logs for more details.";
    try {
        ApplicationContext appContext = (ApplicationContext) context.getScheduler().getContext().get("applicationContext");
        mailSender = (OpenClinicaMailSender) appContext.getBean("openClinicaMailSender");
        mailSender.sendEmail(target, EmailEngine.getAdminEmail(), subject, emailBody, false);
        logger.info("sending an email to " + target + " from " + EmailEngine.getAdminEmail());
    } catch (SchedulerException se) {
        logger.warn("Error sending email", se);
    } catch (OpenClinicaSystemException ose) {
        logger.warn("Error sending email", ose);
    }
}
Also used : ApplicationContext(org.springframework.context.ApplicationContext) SchedulerException(org.quartz.SchedulerException) OpenClinicaSystemException(org.akaza.openclinica.exception.OpenClinicaSystemException)

Example 59 with OpenClinicaSystemException

use of org.akaza.openclinica.exception.OpenClinicaSystemException in project OpenClinica by OpenClinica.

the class OpenClinicaVariableNode method testCalculate.

@Override
String testCalculate() throws OpenClinicaSystemException {
    validate();
    String variableValue = testCalculateVariable();
    boolean isEventStatusParamExist = number.endsWith(STATUS);
    boolean isEventStartDateParamExist = number.endsWith(STARTDATE);
    boolean isEventStartDateAndStatusParamExist = (number.endsWith(STARTDATE) || number.endsWith(STATUS));
    if (variableValue != null) {
        return variableValue;
    }
    ItemBean item = getExpressionService().getItemBeanFromExpression(number);
    String testString = "test";
    String testInt = "1";
    String testBoolean = "true";
    String testDate = "2008-01-01";
    String testPDate = "";
    if (item != null) {
        ItemDataType itemDataType = ItemDataType.get(item.getItemDataTypeId());
        switch(itemDataType.getId()) {
            case 1:
                {
                    return theTest(testBoolean);
                }
            case 2:
                {
                    return theTest(testBoolean);
                }
            case 3:
                {
                    return theTest(testString);
                }
            case 4:
                {
                    return theTest(testString);
                }
            case 5:
                {
                    return theTest(testString);
                }
            case 6:
                {
                    return theTest(testInt);
                }
            case 7:
                {
                    return theTest(testInt);
                }
            case 8:
                {
                    return theTest(testString);
                }
            case 9:
                {
                    return theTest(testDate);
                }
            case 10:
                {
                    return theTest(testPDate);
                }
            case 11:
                {
                    return theTest(testString + ".txt");
                }
            default:
                throw new OpenClinicaSystemException("OCRERR_0011");
        }
    } else if (isEventStartDateAndStatusParamExist) {
        if (isEventStatusParamExist)
            return theTest(testString);
        else if (isEventStartDateParamExist)
            return theTest(testDate);
        else
            return null;
    } else {
        throw new OpenClinicaSystemException("OCRERR_0012", new String[] { number });
    }
}
Also used : ItemBean(org.akaza.openclinica.bean.submit.ItemBean) ItemDataType(org.akaza.openclinica.bean.core.ItemDataType) OpenClinicaSystemException(org.akaza.openclinica.exception.OpenClinicaSystemException)

Example 60 with OpenClinicaSystemException

use of org.akaza.openclinica.exception.OpenClinicaSystemException in project OpenClinica by OpenClinica.

the class OpenClinicaVariableNode method validateEvent.

void validateEvent() throws OpenClinicaSystemException {
    StudyEventDefinitionBean studyEventDefinition = getExpressionService().getStudyEventDefinitionFromExpressionForEventScheduling(number);
    String studyEventOID = number.split("\\.")[0];
    String expressionContext = expressionWrapper.getExpressionContext();
    //Verify expression refers to a valid event.
    if (studyEventDefinition == null)
        throw new OpenClinicaSystemException("OCRERR_0034", new String[] { number });
    //Verify expression doesn't use repeating event notation if event is not repeating
    if (!studyEventDefinition.isRepeating() && studyEventOID.matches(REPEATING))
        throw new OpenClinicaSystemException("OCRERR_0039", new String[] { number });
    //Verify only Target expressions use the 'ALL' repeating notation.
    if (expressionContext != null && !expressionContext.equals(ExpressionObjectWrapper.CONTEXT_TARGET)) {
        if (studyEventOID.matches(REPEATING) && !studyEventOID.matches(REPEATING_NOALL))
            throw new OpenClinicaSystemException("OCRERR_0040", new String[] { number });
    }
}
Also used : StudyEventDefinitionBean(org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean) OpenClinicaSystemException(org.akaza.openclinica.exception.OpenClinicaSystemException)

Aggregations

OpenClinicaSystemException (org.akaza.openclinica.exception.OpenClinicaSystemException)76 IOException (java.io.IOException)19 File (java.io.File)13 HashMap (java.util.HashMap)11 ItemDataBean (org.akaza.openclinica.bean.submit.ItemDataBean)11 OpenClinicaExpressionParser (org.akaza.openclinica.logic.expressionTree.OpenClinicaExpressionParser)11 ArrayList (java.util.ArrayList)10 ItemBean (org.akaza.openclinica.bean.submit.ItemBean)10 FileNotFoundException (java.io.FileNotFoundException)8 MessageFormat (java.text.MessageFormat)8 RuleSetBean (org.akaza.openclinica.domain.rule.RuleSetBean)7 RuleActionBean (org.akaza.openclinica.domain.rule.action.RuleActionBean)7 ExpressionBean (org.akaza.openclinica.domain.rule.expression.ExpressionBean)7 ExpressionObjectWrapper (org.akaza.openclinica.domain.rule.expression.ExpressionObjectWrapper)7 FileOutputStream (java.io.FileOutputStream)6 Date (java.util.Date)6 CRFBean (org.akaza.openclinica.bean.admin.CRFBean)6 StudyEventDefinitionBean (org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean)6 RuleBean (org.akaza.openclinica.domain.rule.RuleBean)6 RuleSetRuleBean (org.akaza.openclinica.domain.rule.RuleSetRuleBean)6