Examples with AdminDataCollector org.akaza.openclinica.logic.odmExport.AdminDataCollector used on opensource projects

Example 6 with AdminDataCollector

use of org.akaza.openclinica.logic.odmExport.AdminDataCollector in project OpenClinica by OpenClinica.

the class StudyEndpoint method getReport.

private String getReport(StudyBean currentStudy) {
    //    	ServletContext servletContext =
    //    	    (ServletContext) context.getMessageContext().get(MessageContext.SERVLET_CONTEXT);
    MetaDataCollector mdc = new MetaDataCollector(dataSource, currentStudy, ruleSetRuleDao);
    AdminDataCollector adc = new AdminDataCollector(dataSource, currentStudy);
    MetaDataCollector.setTextLength(200);
    ODMBean odmb = mdc.getODMBean();
    odmb.setSchemaLocation("http://www.cdisc.org/ns/odm/v1.3 OpenClinica-ODM1-3-0-OC2-0.xsd");
    ArrayList<String> xmlnsList = new ArrayList<String>();
    xmlnsList.add("xmlns=\"http://www.cdisc.org/ns/odm/v1.3\"");
    //xmlnsList.add("xmlns:OpenClinica=\"http://www.openclinica.org/ns/openclinica_odm/v1.3\"");
    xmlnsList.add("xmlns:OpenClinica=\"http://www.openclinica.org/ns/odm_ext_v130/v3.1\"");
    xmlnsList.add("xmlns:OpenClinicaRules=\"http://www.openclinica.org/ns/rules/v3.1\"");
    odmb.setXmlnsList(xmlnsList);
    odmb.setODMVersion("oc1.3");
    mdc.setODMBean(odmb);
    adc.setOdmbean(odmb);
    mdc.collectFileData();
    adc.collectFileData();
    FullReportBean report = new FullReportBean();
    report.setAdminDataMap(adc.getOdmAdminDataMap());
    report.setOdmStudyMap(mdc.getOdmStudyMap());
    report.setCoreResources(coreResources);
    report.setOdmBean(mdc.getODMBean());
    report.setODMVersion("oc1.3");
    report.createStudyMetaOdmXml(Boolean.FALSE);
    return report.getXmlOutput().toString().trim();
}

Example 7 with AdminDataCollector

use of org.akaza.openclinica.logic.odmExport.AdminDataCollector in project OpenClinica by OpenClinica.

the class MetadataCollectorResource method collectODMMetadataForClinicalData.

public FullReportBean collectODMMetadataForClinicalData(String studyOID, String formVersionOID, LinkedHashMap<String, OdmClinicalDataBean> clinicalDataMap) {
    StudyBean studyBean = getStudyDao().findByOid(studyOID);
    if (studyBean != null)
        studyBean = populateStudyBean(studyBean);
    MetaDataCollector mdc = new MetaDataCollector(this.dataSource, studyBean, getRuleSetRuleDao());
    AdminDataCollector adc = new AdminDataCollector(this.dataSource, studyBean);
    MetaDataCollector.setTextLength(200);
    ODMBean odmb = mdc.getODMBean();
    odmb.setSchemaLocation("http://www.cdisc.org/ns/odm/v1.3 OpenClinica-ODM1-3-0-OC3-0.xsd");
    ArrayList<String> xmlnsList = new ArrayList<String>();
    xmlnsList.add("xmlns=\"http://www.cdisc.org/ns/odm/v1.3\"");
    // xmlnsList.add("xmlns:OpenClinica=\"http://www.openclinica.org/ns/openclinica_odm/v1.3\"");
    xmlnsList.add("xmlns:OpenClinica=\"http://www.openclinica.org/ns/odm_ext_v130/v3.1\"");
    xmlnsList.add("xmlns:OpenClinicaRules=\"http://www.openclinica.org/ns/rules/v3.1\"");
    odmb.setXmlnsList(xmlnsList);
    odmb.setODMVersion("oc1.3");
    mdc.setODMBean(odmb);
    adc.setOdmbean(odmb);
    if (studyBean == null)
        mdc.collectFileData(formVersionOID);
    else
        mdc.collectFileData();
    adc.collectFileData();
    FullReportBean report = new FullReportBean();
    report.setAdminDataMap(adc.getOdmAdminDataMap());
    report.setOdmStudyMap(mdc.getOdmStudyMap());
    report.setCoreResources(getCoreResources());
    report.setOdmBean(mdc.getODMBean());
    // report.setClinicalData(odmClinicalDataBean);
    report.setClinicalDataMap(clinicalDataMap);
    report.setODMVersion("oc1.3");
    return report;
}