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Example 41 with ColumnVisibility

use of org.apache.accumulo.core.security.ColumnVisibility in project hive by apache.

the class TestHiveAccumuloTableOutputFormat method testWriteToMockInstanceWithVisibility.

@Test
public void testWriteToMockInstanceWithVisibility() throws Exception {
    Instance inst = new MockInstance(test.getMethodName());
    Connector conn = inst.getConnector("root", new PasswordToken(""));
    Authorizations auths = new Authorizations("foo");
    conn.securityOperations().changeUserAuthorizations("root", auths);
    HiveAccumuloTableOutputFormat outputFormat = new HiveAccumuloTableOutputFormat();
    String table = test.getMethodName();
    conn.tableOperations().create(table);
    JobConf conf = new JobConf();
    conf.set(AccumuloConnectionParameters.INSTANCE_NAME, inst.getInstanceName());
    conf.set(AccumuloConnectionParameters.USER_NAME, "root");
    conf.set(AccumuloConnectionParameters.USER_PASS, "");
    conf.setBoolean(AccumuloConnectionParameters.USE_MOCK_INSTANCE, true);
    conf.set(AccumuloConnectionParameters.TABLE_NAME, test.getMethodName());
    FileSystem local = FileSystem.getLocal(conf);
    outputFormat.checkOutputSpecs(local, conf);
    RecordWriter<Text, Mutation> recordWriter = outputFormat.getRecordWriter(local, conf, null, null);
    List<String> names = Arrays.asList("row", "col1", "col2");
    List<TypeInfo> types = Arrays.<TypeInfo>asList(TypeInfoFactory.stringTypeInfo, TypeInfoFactory.stringTypeInfo, TypeInfoFactory.stringTypeInfo);
    Properties tableProperties = new Properties();
    tableProperties.setProperty(AccumuloSerDeParameters.COLUMN_MAPPINGS, ":rowID,cf:cq1,cf:cq2");
    tableProperties.setProperty(serdeConstants.FIELD_DELIM, " ");
    tableProperties.setProperty(serdeConstants.LIST_COLUMNS, Joiner.on(',').join(names));
    tableProperties.setProperty(serdeConstants.LIST_COLUMN_TYPES, Joiner.on(',').join(types));
    AccumuloSerDeParameters accumuloSerDeParams = new AccumuloSerDeParameters(new Configuration(), tableProperties, AccumuloSerDe.class.getSimpleName());
    LazySerDeParameters serDeParams = accumuloSerDeParams.getSerDeParameters();
    AccumuloRowSerializer serializer = new AccumuloRowSerializer(0, serDeParams, accumuloSerDeParams.getColumnMappings(), new ColumnVisibility("foo"), accumuloSerDeParams.getRowIdFactory());
    LazySimpleStructObjectInspector structOI = (LazySimpleStructObjectInspector) LazyFactory.createLazyStructInspector(Arrays.asList("row", "cq1", "cq2"), Arrays.<TypeInfo>asList(TypeInfoFactory.stringTypeInfo, TypeInfoFactory.stringTypeInfo, TypeInfoFactory.stringTypeInfo), serDeParams.getSeparators(), serDeParams.getNullSequence(), serDeParams.isLastColumnTakesRest(), serDeParams.isEscaped(), serDeParams.getEscapeChar());
    LazyStruct struct = (LazyStruct) LazyFactory.createLazyObject(structOI);
    ByteArrayRef bytes = new ByteArrayRef();
    bytes.setData("row value1 value2".getBytes());
    struct.init(bytes, 0, bytes.getData().length);
    // Serialize the struct into a mutation
    Mutation m = serializer.serialize(struct, structOI);
    // Write the mutation
    recordWriter.write(new Text(table), m);
    // Close the writer
    recordWriter.close(null);
    Iterator<Entry<Key, Value>> iter = conn.createScanner(table, auths).iterator();
    Assert.assertTrue("Iterator did not have an element as expected", iter.hasNext());
    Entry<Key, Value> entry = iter.next();
    Key k = entry.getKey();
    Value v = entry.getValue();
    Assert.assertEquals("row", k.getRow().toString());
    Assert.assertEquals("cf", k.getColumnFamily().toString());
    Assert.assertEquals("cq1", k.getColumnQualifier().toString());
    Assert.assertEquals("foo", k.getColumnVisibility().toString());
    Assert.assertEquals("value1", new String(v.get()));
    Assert.assertTrue("Iterator did not have an element as expected", iter.hasNext());
    entry = iter.next();
    k = entry.getKey();
    v = entry.getValue();
    Assert.assertEquals("row", k.getRow().toString());
    Assert.assertEquals("cf", k.getColumnFamily().toString());
    Assert.assertEquals("cq2", k.getColumnQualifier().toString());
    Assert.assertEquals("foo", k.getColumnVisibility().toString());
    Assert.assertEquals("value2", new String(v.get()));
    Assert.assertFalse("Iterator unexpectedly had more data", iter.hasNext());
}
Also used : Connector(org.apache.accumulo.core.client.Connector) Configuration(org.apache.hadoop.conf.Configuration) MockInstance(org.apache.accumulo.core.client.mock.MockInstance) Instance(org.apache.accumulo.core.client.Instance) LazySerDeParameters(org.apache.hadoop.hive.serde2.lazy.LazySerDeParameters) Properties(java.util.Properties) PasswordToken(org.apache.accumulo.core.client.security.tokens.PasswordToken) Entry(java.util.Map.Entry) MockInstance(org.apache.accumulo.core.client.mock.MockInstance) FileSystem(org.apache.hadoop.fs.FileSystem) ColumnVisibility(org.apache.accumulo.core.security.ColumnVisibility) JobConf(org.apache.hadoop.mapred.JobConf) AccumuloRowSerializer(org.apache.hadoop.hive.accumulo.serde.AccumuloRowSerializer) LazyStruct(org.apache.hadoop.hive.serde2.lazy.LazyStruct) Authorizations(org.apache.accumulo.core.security.Authorizations) LazySimpleStructObjectInspector(org.apache.hadoop.hive.serde2.lazy.objectinspector.LazySimpleStructObjectInspector) Text(org.apache.hadoop.io.Text) TypeInfo(org.apache.hadoop.hive.serde2.typeinfo.TypeInfo) AccumuloSerDe(org.apache.hadoop.hive.accumulo.serde.AccumuloSerDe) AccumuloSerDeParameters(org.apache.hadoop.hive.accumulo.serde.AccumuloSerDeParameters) ByteArrayRef(org.apache.hadoop.hive.serde2.lazy.ByteArrayRef) Value(org.apache.accumulo.core.data.Value) Mutation(org.apache.accumulo.core.data.Mutation) Key(org.apache.accumulo.core.data.Key) Test(org.junit.Test)

Example 42 with ColumnVisibility

use of org.apache.accumulo.core.security.ColumnVisibility in project Gaffer by gchq.

the class AccumuloStore method insertGraphElements.

protected void insertGraphElements(final Iterable<? extends Element> elements) throws StoreException {
    // Create BatchWriter
    final BatchWriter writer = TableUtils.createBatchWriter(this);
    // too high a latency, etc.
    if (null != elements) {
        for (final Element element : elements) {
            final Pair<Key, Key> keys;
            try {
                keys = keyPackage.getKeyConverter().getKeysFromElement(element);
            } catch (final AccumuloElementConversionException e) {
                LOGGER.error(FAILED_TO_CREATE_AN_ACCUMULO_FROM_ELEMENT_OF_TYPE_WHEN_TRYING_TO_INSERT_ELEMENTS, "key", element.getGroup());
                continue;
            }
            final Value value;
            try {
                value = keyPackage.getKeyConverter().getValueFromElement(element);
            } catch (final AccumuloElementConversionException e) {
                LOGGER.error(FAILED_TO_CREATE_AN_ACCUMULO_FROM_ELEMENT_OF_TYPE_WHEN_TRYING_TO_INSERT_ELEMENTS, "value", element.getGroup());
                continue;
            }
            final Mutation m = new Mutation(keys.getFirst().getRow());
            m.put(keys.getFirst().getColumnFamily(), keys.getFirst().getColumnQualifier(), new ColumnVisibility(keys.getFirst().getColumnVisibility()), keys.getFirst().getTimestamp(), value);
            try {
                writer.addMutation(m);
            } catch (final MutationsRejectedException e) {
                LOGGER.error("Failed to create an accumulo key mutation");
                continue;
            }
            // If the GraphElement is an Edge then there will be 2 keys.
            if (null != keys.getSecond()) {
                final Mutation m2 = new Mutation(keys.getSecond().getRow());
                m2.put(keys.getSecond().getColumnFamily(), keys.getSecond().getColumnQualifier(), new ColumnVisibility(keys.getSecond().getColumnVisibility()), keys.getSecond().getTimestamp(), value);
                try {
                    writer.addMutation(m2);
                } catch (final MutationsRejectedException e) {
                    LOGGER.error("Failed to create an accumulo key mutation");
                }
            }
        }
    } else {
        throw new GafferRuntimeException("Could not find any elements to add to graph.", Status.BAD_REQUEST);
    }
    try {
        writer.close();
    } catch (final MutationsRejectedException e) {
        LOGGER.warn("Accumulo batch writer failed to close", e);
    }
}
Also used : Element(uk.gov.gchq.gaffer.data.element.Element) Value(org.apache.accumulo.core.data.Value) BatchWriter(org.apache.accumulo.core.client.BatchWriter) Mutation(org.apache.accumulo.core.data.Mutation) ColumnVisibility(org.apache.accumulo.core.security.ColumnVisibility) Key(org.apache.accumulo.core.data.Key) AccumuloElementConversionException(uk.gov.gchq.gaffer.accumulostore.key.exception.AccumuloElementConversionException) MutationsRejectedException(org.apache.accumulo.core.client.MutationsRejectedException) GafferRuntimeException(uk.gov.gchq.gaffer.core.exception.GafferRuntimeException)

Example 43 with ColumnVisibility

use of org.apache.accumulo.core.security.ColumnVisibility in project Gaffer by gchq.

the class CoreKeyGroupByAggregatorIteratorTest method shouldAggregateEverythingWhenGroupByIsSetToBlank.

public void shouldAggregateEverythingWhenGroupByIsSetToBlank(final AccumuloStore store, final AccumuloElementConverter elementConverter) throws StoreException {
    final String visibilityString = "public";
    try {
        // Create edge
        final Edge edge = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 1).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 1).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 1).build();
        final Edge edge2 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 1).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 1).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 1).build();
        final Edge edge3 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 1).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 1).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 1).build();
        // THIS EDGE WILL BE REDUCED MEANING ITS CQ (columnQualifier) will only occur once because its key is equal.
        final Edge edge4 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 1).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 4).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 2).build();
        final Edge edge5 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 3).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 5).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 10).build();
        final Edge edge6 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 3).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 5).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 5).build();
        // Accumulo key
        final Key key = elementConverter.getKeysFromEdge(edge).getFirst();
        final Key key2 = elementConverter.getKeysFromEdge(edge2).getFirst();
        final Key key3 = elementConverter.getKeysFromEdge(edge3).getFirst();
        final Key key4 = elementConverter.getKeysFromEdge(edge4).getFirst();
        final Key key5 = elementConverter.getKeysFromEdge(edge5).getFirst();
        final Key key6 = elementConverter.getKeysFromEdge(edge6).getFirst();
        // Accumulo values
        final Value value1 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge.getProperties());
        final Value value2 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge2.getProperties());
        final Value value3 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge3.getProperties());
        final Value value4 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge4.getProperties());
        final Value value5 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge5.getProperties());
        final Value value6 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge6.getProperties());
        // Create mutation
        final Mutation m1 = new Mutation(key.getRow());
        m1.put(key.getColumnFamily(), key.getColumnQualifier(), new ColumnVisibility(key.getColumnVisibility()), key.getTimestamp(), value1);
        final Mutation m2 = new Mutation(key2.getRow());
        m2.put(key2.getColumnFamily(), key2.getColumnQualifier(), new ColumnVisibility(key2.getColumnVisibility()), key2.getTimestamp(), value2);
        final Mutation m3 = new Mutation(key.getRow());
        m3.put(key3.getColumnFamily(), key3.getColumnQualifier(), new ColumnVisibility(key3.getColumnVisibility()), key3.getTimestamp(), value3);
        final Mutation m4 = new Mutation(key.getRow());
        m4.put(key4.getColumnFamily(), key4.getColumnQualifier(), new ColumnVisibility(key4.getColumnVisibility()), key4.getTimestamp(), value4);
        final Mutation m5 = new Mutation(key.getRow());
        m5.put(key5.getColumnFamily(), key5.getColumnQualifier(), new ColumnVisibility(key5.getColumnVisibility()), key5.getTimestamp(), value5);
        final Mutation m6 = new Mutation(key.getRow());
        m6.put(key6.getColumnFamily(), key6.getColumnQualifier(), new ColumnVisibility(key6.getColumnVisibility()), key6.getTimestamp(), value6);
        // Write mutation
        final BatchWriterConfig writerConfig = new BatchWriterConfig();
        writerConfig.setMaxMemory(1000000L);
        writerConfig.setMaxLatency(1000L, TimeUnit.MILLISECONDS);
        writerConfig.setMaxWriteThreads(1);
        final BatchWriter writer = store.getConnection().createBatchWriter(store.getTableName(), writerConfig);
        writer.addMutation(m1);
        writer.addMutation(m2);
        writer.addMutation(m3);
        writer.addMutation(m4);
        writer.addMutation(m5);
        writer.addMutation(m6);
        writer.close();
        Edge expectedEdge1 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 5).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 10).property(AccumuloPropertyNames.COUNT, 20).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).build();
        // Read data back and check we get one merged element
        final Authorizations authorizations = new Authorizations(visibilityString);
        final Scanner scanner = store.getConnection().createScanner(store.getTableName(), authorizations);
        final IteratorSetting iteratorSetting = new IteratorSettingBuilder(AccumuloStoreConstants.COLUMN_QUALIFIER_AGGREGATOR_ITERATOR_PRIORITY, "KeyCombiner", CoreKeyGroupByAggregatorIterator.class).all().view(new View.Builder().edge(TestGroups.EDGE, new ViewElementDefinition.Builder().groupBy().build()).build()).schema(store.getSchema()).keyConverter(store.getKeyPackage().getKeyConverter()).build();
        scanner.addScanIterator(iteratorSetting);
        final Iterator<Entry<Key, Value>> it = scanner.iterator();
        Entry<Key, Value> entry = it.next();
        Element readEdge = elementConverter.getFullElement(entry.getKey(), entry.getValue(), false);
        assertEquals(expectedEdge1, readEdge);
        assertEquals(5, readEdge.getProperty(AccumuloPropertyNames.COLUMN_QUALIFIER));
        assertEquals(10, readEdge.getProperty(AccumuloPropertyNames.COLUMN_QUALIFIER_2));
        assertEquals(20, readEdge.getProperty(AccumuloPropertyNames.COUNT));
        if (it.hasNext()) {
            fail("Additional row found.");
        }
    } catch (final AccumuloException | TableNotFoundException e) {
        fail(this.getClass().getSimpleName() + " failed with exception: " + e);
    }
}
Also used : Scanner(org.apache.accumulo.core.client.Scanner) AccumuloException(org.apache.accumulo.core.client.AccumuloException) Authorizations(org.apache.accumulo.core.security.Authorizations) IteratorSettingBuilder(uk.gov.gchq.gaffer.accumulostore.utils.IteratorSettingBuilder) Element(uk.gov.gchq.gaffer.data.element.Element) IteratorSettingBuilder(uk.gov.gchq.gaffer.accumulostore.utils.IteratorSettingBuilder) TableNotFoundException(org.apache.accumulo.core.client.TableNotFoundException) Entry(java.util.Map.Entry) IteratorSetting(org.apache.accumulo.core.client.IteratorSetting) Value(org.apache.accumulo.core.data.Value) BatchWriterConfig(org.apache.accumulo.core.client.BatchWriterConfig) Mutation(org.apache.accumulo.core.data.Mutation) ColumnVisibility(org.apache.accumulo.core.security.ColumnVisibility) BatchWriter(org.apache.accumulo.core.client.BatchWriter) Edge(uk.gov.gchq.gaffer.data.element.Edge) Key(org.apache.accumulo.core.data.Key)

Example 44 with ColumnVisibility

use of org.apache.accumulo.core.security.ColumnVisibility in project Gaffer by gchq.

the class CoreKeyGroupByAggregatorIteratorTest method testAggregatingMultiplePropertySets.

private void testAggregatingMultiplePropertySets(final AccumuloStore store, final AccumuloElementConverter elementConverter) throws StoreException {
    String visibilityString = "public";
    try {
        // Create edge
        final Edge edge = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 8).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 1).build();
        // THIS EDGE WILL BE REDUCED MEANING ITS CQ (columnQualifier) will only occur once because its key is equal.
        final Edge edge2 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 1).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 2).build();
        final Edge edge3 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 1).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 10).build();
        // Accumulo key
        final Key key = elementConverter.getKeysFromEdge(edge).getFirst();
        final Key key2 = elementConverter.getKeysFromEdge(edge2).getFirst();
        final Key key3 = elementConverter.getKeysFromEdge(edge3).getFirst();
        // Accumulo values
        final Value value1 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge.getProperties());
        final Value value2 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge2.getProperties());
        final Value value3 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge3.getProperties());
        // Create mutation
        final Mutation m1 = new Mutation(key.getRow());
        m1.put(key.getColumnFamily(), key.getColumnQualifier(), new ColumnVisibility(key.getColumnVisibility()), key.getTimestamp(), value1);
        final Mutation m2 = new Mutation(key.getRow());
        m2.put(key.getColumnFamily(), key.getColumnQualifier(), new ColumnVisibility(key.getColumnVisibility()), key.getTimestamp(), value2);
        final Mutation m3 = new Mutation(key.getRow());
        m3.put(key.getColumnFamily(), key.getColumnQualifier(), new ColumnVisibility(key.getColumnVisibility()), key.getTimestamp(), value3);
        final Mutation m4 = new Mutation(key2.getRow());
        m4.put(key2.getColumnFamily(), key2.getColumnQualifier(), new ColumnVisibility(key2.getColumnVisibility()), key2.getTimestamp(), value1);
        final Mutation m5 = new Mutation(key.getRow());
        m5.put(key3.getColumnFamily(), key3.getColumnQualifier(), new ColumnVisibility(key3.getColumnVisibility()), key3.getTimestamp(), value1);
        // Write mutation
        final BatchWriterConfig writerConfig = new BatchWriterConfig();
        writerConfig.setMaxMemory(1000000L);
        writerConfig.setMaxLatency(1000L, TimeUnit.MILLISECONDS);
        writerConfig.setMaxWriteThreads(1);
        final BatchWriter writer = store.getConnection().createBatchWriter(store.getTableName(), writerConfig);
        writer.addMutation(m1);
        writer.addMutation(m2);
        writer.addMutation(m3);
        writer.addMutation(m4);
        writer.addMutation(m5);
        writer.close();
        // Read data back and check we get one merged element
        final Authorizations authorizations = new Authorizations(visibilityString);
        final Scanner scanner = store.getConnection().createScanner(store.getTableName(), authorizations);
        final IteratorSetting iteratorSetting = new IteratorSettingBuilder(AccumuloStoreConstants.COLUMN_QUALIFIER_AGGREGATOR_ITERATOR_PRIORITY, "KeyCombiner", CoreKeyGroupByAggregatorIterator.class).all().schema(store.getSchema()).view(new View.Builder().edge(TestGroups.EDGE, new ViewElementDefinition.Builder().groupBy().build()).build()).keyConverter(store.getKeyPackage().getKeyConverter()).build();
        scanner.addScanIterator(iteratorSetting);
        final Iterator<Entry<Key, Value>> it = scanner.iterator();
        final Entry<Key, Value> entry = it.next();
        final Element readEdge = elementConverter.getFullElement(entry.getKey(), entry.getValue(), false);
        final Edge expectedEdge = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 9).property(AccumuloPropertyNames.COUNT, 15).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).build();
        assertEquals(expectedEdge, readEdge);
        assertEquals(9, readEdge.getProperty(AccumuloPropertyNames.COLUMN_QUALIFIER));
        assertEquals(15, readEdge.getProperty(AccumuloPropertyNames.COUNT));
        // Check no more entries
        if (it.hasNext()) {
            fail("Additional row found.");
        }
    } catch (final AccumuloException | TableNotFoundException e) {
        fail(this.getClass().getSimpleName() + " failed with exception: " + e);
    }
}
Also used : Scanner(org.apache.accumulo.core.client.Scanner) Element(uk.gov.gchq.gaffer.data.element.Element) ViewElementDefinition(uk.gov.gchq.gaffer.data.elementdefinition.view.ViewElementDefinition) TableNotFoundException(org.apache.accumulo.core.client.TableNotFoundException) Entry(java.util.Map.Entry) BatchWriterConfig(org.apache.accumulo.core.client.BatchWriterConfig) ColumnVisibility(org.apache.accumulo.core.security.ColumnVisibility) AccumuloException(org.apache.accumulo.core.client.AccumuloException) Authorizations(org.apache.accumulo.core.security.Authorizations) IteratorSettingBuilder(uk.gov.gchq.gaffer.accumulostore.utils.IteratorSettingBuilder) View(uk.gov.gchq.gaffer.data.elementdefinition.view.View) IteratorSetting(org.apache.accumulo.core.client.IteratorSetting) Value(org.apache.accumulo.core.data.Value) Mutation(org.apache.accumulo.core.data.Mutation) BatchWriter(org.apache.accumulo.core.client.BatchWriter) Edge(uk.gov.gchq.gaffer.data.element.Edge) Key(org.apache.accumulo.core.data.Key)

Example 45 with ColumnVisibility

use of org.apache.accumulo.core.security.ColumnVisibility in project Gaffer by gchq.

the class CoreKeyGroupByAggregatorIteratorTest method shouldPartiallyAggregateColumnQualifierOverCQ1GroupBy.

public void shouldPartiallyAggregateColumnQualifierOverCQ1GroupBy(final AccumuloStore store, final AccumuloElementConverter elementConverter) throws StoreException {
    final String visibilityString = "public";
    try {
        // Create edge
        final Edge edge = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 1).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 1).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 1).build();
        final Edge edge2 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 1).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 2).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 1).build();
        final Edge edge3 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 1).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 3).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 1).build();
        // THIS EDGE WILL BE REDUCED MEANING ITS CQ (columnQualifier) will only occur once because its key is equal.
        final Edge edge4 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 2).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 4).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 2).build();
        final Edge edge5 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 3).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 5).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 10).build();
        final Edge edge6 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 4).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 6).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).property(AccumuloPropertyNames.COUNT, 5).build();
        // Accumulo key
        final Key key = elementConverter.getKeysFromEdge(edge).getFirst();
        final Key key2 = elementConverter.getKeysFromEdge(edge2).getFirst();
        final Key key3 = elementConverter.getKeysFromEdge(edge3).getFirst();
        final Key key4 = elementConverter.getKeysFromEdge(edge4).getFirst();
        final Key key5 = elementConverter.getKeysFromEdge(edge5).getFirst();
        final Key key6 = elementConverter.getKeysFromEdge(edge6).getFirst();
        // Accumulo values
        final Value value1 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge.getProperties());
        final Value value2 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge2.getProperties());
        final Value value3 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge3.getProperties());
        final Value value4 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge4.getProperties());
        final Value value5 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge5.getProperties());
        final Value value6 = elementConverter.getValueFromProperties(TestGroups.EDGE, edge6.getProperties());
        // Create mutation
        final Mutation m1 = new Mutation(key.getRow());
        m1.put(key.getColumnFamily(), key.getColumnQualifier(), new ColumnVisibility(key.getColumnVisibility()), key.getTimestamp(), value1);
        final Mutation m2 = new Mutation(key2.getRow());
        m2.put(key2.getColumnFamily(), key2.getColumnQualifier(), new ColumnVisibility(key2.getColumnVisibility()), key2.getTimestamp(), value2);
        final Mutation m3 = new Mutation(key.getRow());
        m3.put(key3.getColumnFamily(), key3.getColumnQualifier(), new ColumnVisibility(key3.getColumnVisibility()), key3.getTimestamp(), value3);
        final Mutation m4 = new Mutation(key.getRow());
        m4.put(key4.getColumnFamily(), key4.getColumnQualifier(), new ColumnVisibility(key4.getColumnVisibility()), key4.getTimestamp(), value4);
        final Mutation m5 = new Mutation(key.getRow());
        m5.put(key5.getColumnFamily(), key5.getColumnQualifier(), new ColumnVisibility(key5.getColumnVisibility()), key5.getTimestamp(), value5);
        final Mutation m6 = new Mutation(key.getRow());
        m6.put(key6.getColumnFamily(), key6.getColumnQualifier(), new ColumnVisibility(key6.getColumnVisibility()), key6.getTimestamp(), value6);
        // Write mutation
        final BatchWriterConfig writerConfig = new BatchWriterConfig();
        writerConfig.setMaxMemory(1000000L);
        writerConfig.setMaxLatency(1000L, TimeUnit.MILLISECONDS);
        writerConfig.setMaxWriteThreads(1);
        final BatchWriter writer = store.getConnection().createBatchWriter(store.getTableName(), writerConfig);
        writer.addMutation(m1);
        writer.addMutation(m2);
        writer.addMutation(m3);
        writer.addMutation(m4);
        writer.addMutation(m5);
        writer.addMutation(m6);
        writer.close();
        Edge expectedEdge1 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 1).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 6).property(AccumuloPropertyNames.COUNT, 3).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).build();
        Edge expectedEdge2 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 2).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 4).property(AccumuloPropertyNames.COUNT, 2).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).build();
        Edge expectedEdge3 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 3).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 5).property(AccumuloPropertyNames.COUNT, 10).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).build();
        Edge expectedEdge4 = new Edge.Builder().group(TestGroups.EDGE).source("1").dest("2").directed(true).property(AccumuloPropertyNames.COLUMN_QUALIFIER, 4).property(AccumuloPropertyNames.COLUMN_QUALIFIER_2, 6).property(AccumuloPropertyNames.COUNT, 5).property(AccumuloPropertyNames.PROP_1, 0).property(AccumuloPropertyNames.PROP_2, 0).property(AccumuloPropertyNames.PROP_3, 0).property(AccumuloPropertyNames.PROP_4, 0).build();
        // Read data back and check we get one merged element
        final Authorizations authorizations = new Authorizations(visibilityString);
        final Scanner scanner = store.getConnection().createScanner(store.getTableName(), authorizations);
        final IteratorSetting iteratorSetting = new IteratorSettingBuilder(AccumuloStoreConstants.COLUMN_QUALIFIER_AGGREGATOR_ITERATOR_PRIORITY, "KeyCombiner", CoreKeyGroupByAggregatorIterator.class).all().view(new View.Builder().edge(TestGroups.EDGE, new ViewElementDefinition.Builder().groupBy(AccumuloPropertyNames.COLUMN_QUALIFIER).build()).build()).schema(store.getSchema()).keyConverter(store.getKeyPackage().getKeyConverter()).build();
        scanner.addScanIterator(iteratorSetting);
        final Iterator<Entry<Key, Value>> it = scanner.iterator();
        Entry<Key, Value> entry = it.next();
        Element readEdge = elementConverter.getFullElement(entry.getKey(), entry.getValue(), false);
        assertEquals(expectedEdge1, readEdge);
        assertEquals(1, readEdge.getProperty(AccumuloPropertyNames.COLUMN_QUALIFIER));
        assertEquals(6, readEdge.getProperty(AccumuloPropertyNames.COLUMN_QUALIFIER_2));
        assertEquals(3, readEdge.getProperty(AccumuloPropertyNames.COUNT));
        entry = it.next();
        readEdge = elementConverter.getFullElement(entry.getKey(), entry.getValue(), false);
        assertEquals(expectedEdge2, readEdge);
        assertEquals(2, readEdge.getProperty(AccumuloPropertyNames.COLUMN_QUALIFIER));
        assertEquals(4, readEdge.getProperty(AccumuloPropertyNames.COLUMN_QUALIFIER_2));
        assertEquals(2, readEdge.getProperty(AccumuloPropertyNames.COUNT));
        entry = it.next();
        readEdge = elementConverter.getFullElement(entry.getKey(), entry.getValue(), false);
        assertEquals(expectedEdge3, readEdge);
        assertEquals(3, readEdge.getProperty(AccumuloPropertyNames.COLUMN_QUALIFIER));
        assertEquals(5, readEdge.getProperty(AccumuloPropertyNames.COLUMN_QUALIFIER_2));
        assertEquals(10, readEdge.getProperty(AccumuloPropertyNames.COUNT));
        entry = it.next();
        readEdge = elementConverter.getFullElement(entry.getKey(), entry.getValue(), false);
        assertEquals(expectedEdge4, readEdge);
        assertEquals(4, readEdge.getProperty(AccumuloPropertyNames.COLUMN_QUALIFIER));
        assertEquals(6, readEdge.getProperty(AccumuloPropertyNames.COLUMN_QUALIFIER_2));
        assertEquals(5, readEdge.getProperty(AccumuloPropertyNames.COUNT));
        if (it.hasNext()) {
            fail("Additional row found.");
        }
    } catch (final AccumuloException | TableNotFoundException e) {
        fail(this.getClass().getSimpleName() + " failed with exception: " + e);
    }
}
Also used : Scanner(org.apache.accumulo.core.client.Scanner) AccumuloException(org.apache.accumulo.core.client.AccumuloException) Authorizations(org.apache.accumulo.core.security.Authorizations) IteratorSettingBuilder(uk.gov.gchq.gaffer.accumulostore.utils.IteratorSettingBuilder) Element(uk.gov.gchq.gaffer.data.element.Element) IteratorSettingBuilder(uk.gov.gchq.gaffer.accumulostore.utils.IteratorSettingBuilder) TableNotFoundException(org.apache.accumulo.core.client.TableNotFoundException) Entry(java.util.Map.Entry) IteratorSetting(org.apache.accumulo.core.client.IteratorSetting) Value(org.apache.accumulo.core.data.Value) BatchWriterConfig(org.apache.accumulo.core.client.BatchWriterConfig) Mutation(org.apache.accumulo.core.data.Mutation) ColumnVisibility(org.apache.accumulo.core.security.ColumnVisibility) BatchWriter(org.apache.accumulo.core.client.BatchWriter) Edge(uk.gov.gchq.gaffer.data.element.Edge) Key(org.apache.accumulo.core.data.Key)

Aggregations

ColumnVisibility (org.apache.accumulo.core.security.ColumnVisibility)145 Mutation (org.apache.accumulo.core.data.Mutation)62 Text (org.apache.hadoop.io.Text)59 Value (org.apache.accumulo.core.data.Value)57 Key (org.apache.accumulo.core.data.Key)43 BatchWriter (org.apache.accumulo.core.client.BatchWriter)31 Test (org.junit.Test)23 BatchWriterConfig (org.apache.accumulo.core.client.BatchWriterConfig)19 Test (org.junit.jupiter.api.Test)18 ArrayList (java.util.ArrayList)17 Entry (java.util.Map.Entry)17 Authorizations (org.apache.accumulo.core.security.Authorizations)17 TableNotFoundException (org.apache.accumulo.core.client.TableNotFoundException)16 Scanner (org.apache.accumulo.core.client.Scanner)14 MutationsRejectedException (org.apache.accumulo.core.client.MutationsRejectedException)13 Configuration (org.apache.hadoop.conf.Configuration)13 ColumnUpdate (org.apache.accumulo.core.data.ColumnUpdate)12 AccumuloException (org.apache.accumulo.core.client.AccumuloException)11 TMutation (org.apache.accumulo.core.dataImpl.thrift.TMutation)11 IteratorSetting (org.apache.accumulo.core.client.IteratorSetting)10