use of org.apache.airavata.model.application.io.InputDataObjectType in project airavata by apache.
the class RegisterSampleApplications method registerEspressoInterface.
public void registerEspressoInterface() {
try {
System.out.println("#### Registering Espresso Interface #### \n");
List<String> appModules = new ArrayList<String>();
appModules.add(espressoModuleId);
InputDataObjectType input1 = RegisterSampleApplicationsUtils.createAppInput("AI_Primitive_Cell", null, DataType.URI, null, 1, true, true, false, "AI_Metal_Input_File - Al.sample.in", null);
InputDataObjectType input2 = RegisterSampleApplicationsUtils.createAppInput("AI_Pseudopotential_File", null, DataType.URI, null, 2, true, true, false, "Constant pressure and temperature for production stage - Al.pz-vbc.UPF", null);
List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
applicationInputs.add(input1);
applicationInputs.add(input2);
OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("ESPRESSO_Execution_Log", null, DataType.URI, true, true, null);
OutputDataObjectType output2 = RegisterSampleApplicationsUtils.createAppOutput("ESPRESSO_WFC_Binary_file", null, DataType.URI, true, true, null);
OutputDataObjectType output3 = RegisterSampleApplicationsUtils.createAppOutput("STDOUT", null, DataType.STDOUT, true, true, null);
OutputDataObjectType output4 = RegisterSampleApplicationsUtils.createAppOutput("STDERR", null, DataType.STDERR, true, true, null);
List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
applicationOutputs.add(output1);
applicationOutputs.add(output2);
applicationOutputs.add(output3);
applicationOutputs.add(output4);
espressoInterfaceId = airavataClient.registerApplicationInterface(new AuthzToken(""), DEFAULT_GATEWAY, RegisterSampleApplicationsUtils.createApplicationInterfaceDescription(espressoName, espressoDescription, appModules, applicationInputs, applicationOutputs));
System.out.println("Espresso Application Interface Id " + espressoInterfaceId);
} catch (TException e) {
e.printStackTrace();
}
}
use of org.apache.airavata.model.application.io.InputDataObjectType in project airavata by apache.
the class RegisterSampleApplications method registerPhastaInterface.
public void registerPhastaInterface() {
try {
System.out.println("#### Registering PHASTA Interface #### \n");
List<String> appModules = new ArrayList<String>();
appModules.add(phastaModuleId);
InputDataObjectType input1 = RegisterSampleApplicationsUtils.createAppInput("Parasolid_Geometric_Model", null, DataType.URI, null, 1, true, true, false, "Parasolid geometric model - geom.xmt_txt", null);
InputDataObjectType input2 = RegisterSampleApplicationsUtils.createAppInput("Problem_Definition", null, DataType.URI, null, 2, true, true, false, "problem definition - geom.smd", null);
InputDataObjectType input3 = RegisterSampleApplicationsUtils.createAppInput("Mesh_Description_File", null, DataType.URI, null, 3, true, true, false, "Mesh Description - geom.sms", null);
List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
applicationInputs.add(input1);
applicationInputs.add(input2);
applicationInputs.add(input3);
OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("PHASTA_Execution_Log", null, DataType.URI, true, true, null);
OutputDataObjectType output2 = RegisterSampleApplicationsUtils.createAppOutput("PHASTA_Output_tar", null, DataType.URI, true, true, null);
OutputDataObjectType output3 = RegisterSampleApplicationsUtils.createAppOutput("STDOUT", null, DataType.STDOUT, true, true, null);
OutputDataObjectType output4 = RegisterSampleApplicationsUtils.createAppOutput("STDERR", null, DataType.STDERR, true, true, null);
List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
applicationOutputs.add(output1);
applicationOutputs.add(output2);
applicationOutputs.add(output3);
applicationOutputs.add(output4);
phastaInterfaceId = airavataClient.registerApplicationInterface(new AuthzToken(""), DEFAULT_GATEWAY, RegisterSampleApplicationsUtils.createApplicationInterfaceDescription(phastaName, phastaDescription, appModules, applicationInputs, applicationOutputs));
System.out.println("phasta Application Interface Id " + phastaInterfaceId);
} catch (TException e) {
e.printStackTrace();
}
}
use of org.apache.airavata.model.application.io.InputDataObjectType in project airavata by apache.
the class RegisterSampleApplications method registerNWChemInterface.
public void registerNWChemInterface() {
try {
System.out.println("#### Registering NWChem Interface #### \n");
List<String> appModules = new ArrayList<String>();
appModules.add(nwChemModuleId);
InputDataObjectType input1 = RegisterSampleApplicationsUtils.createAppInput("Water_Molecule_Input", null, DataType.URI, null, 1, true, true, false, "Water Molecule Input File - water.nw", null);
List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
applicationInputs.add(input1);
OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("NWChem_Execution_Log", null, DataType.URI, true, false, null);
OutputDataObjectType output2 = RegisterSampleApplicationsUtils.createAppOutput("STDOUT", null, DataType.STDOUT, true, true, null);
OutputDataObjectType output3 = RegisterSampleApplicationsUtils.createAppOutput("STDERR", null, DataType.STDERR, true, true, null);
List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
applicationOutputs.add(output1);
applicationOutputs.add(output2);
applicationOutputs.add(output3);
nwChemInterfaceId = airavataClient.registerApplicationInterface(new AuthzToken(""), DEFAULT_GATEWAY, RegisterSampleApplicationsUtils.createApplicationInterfaceDescription(nwChemName, nwChemDescription, appModules, applicationInputs, applicationOutputs));
System.out.println("NWChem Application Interface Id " + nwChemInterfaceId);
} catch (TException e) {
e.printStackTrace();
}
}
use of org.apache.airavata.model.application.io.InputDataObjectType in project airavata by apache.
the class AppInterfaceUtil method createApplicationInput.
public static InputDataObjectType createApplicationInput(String name, String value, DataType type, String applicationArgument, int order, boolean standardInput, String userFriendlyDesc, String metadata) {
InputDataObjectType appInput = new InputDataObjectType();
appInput.setName(name);
appInput.setValue(value);
appInput.setType(type);
appInput.setMetaData(metadata);
appInput.setApplicationArgument(applicationArgument);
appInput.setInputOrder(order);
appInput.setUserFriendlyDescription(userFriendlyDesc);
appInput.setStandardInput(standardInput);
return appInput;
}
use of org.apache.airavata.model.application.io.InputDataObjectType in project airavata by apache.
the class OrchestratorClientSample method storeExperimentDetail.
/*
public static void main(String[] args) {
try {
AiravataUtils.setExecutionAsClient();
sysUser = ClientSettings.getSetting(DEFAULT_USER);
sysUserPwd = ClientSettings.getSetting(DEFAULT_USER_PASSWORD);
gateway = ClientSettings.getSetting(DEFAULT_GATEWAY);
orchestratorClient = OrchestratorClientFactory.createOrchestratorClient("localhost", 8940);
registry = RegistryFactory.getRegistry(gateway, sysUser, sysUserPwd);
documentCreator = new DocumentCreator(getAiravataAPI());
documentCreator.createLocalHostDocs();
documentCreator.createGramDocs();
documentCreator.createPBSDocsForOGCE();
storeExperimentDetail();
} catch (ApplicationSettingsException e) {
e.printStackTrace();
} catch (RegistryException e) {
e.printStackTrace();
}
}
private static AiravataAPI getAiravataAPI() {
AiravataAPI airavataAPI = null;
try {
airavataAPI = AiravataAPIFactory.getAPI(gateway, sysUser);
} catch (AiravataAPIInvocationException e) {
e.printStackTrace();
}
return airavataAPI;
}
*/
public static void storeExperimentDetail() {
for (int i = 0; i < NUM_CONCURRENT_REQUESTS; i++) {
Thread thread = new Thread() {
public void run() {
List<InputDataObjectType> exInputs = new ArrayList<InputDataObjectType>();
InputDataObjectType input = new InputDataObjectType();
input.setName("echo_input");
input.setType(DataType.STRING);
input.setValue("echo_output=Hello World");
exInputs.add(input);
List<OutputDataObjectType> exOut = new ArrayList<OutputDataObjectType>();
OutputDataObjectType output = new OutputDataObjectType();
output.setName("echo_output");
output.setType(DataType.STRING);
output.setValue("");
exOut.add(output);
ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, "default", "admin", "echoExperiment", "SimpleEcho2", "SimpleEcho2", exInputs);
simpleExperiment.setExperimentOutputs(exOut);
ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling("trestles.sdsc.edu", 1, 1, 1, "normal", 0, 0);
scheduling.setResourceHostId("gsissh-trestles");
UserConfigurationDataModel userConfigurationDataModel = new UserConfigurationDataModel();
userConfigurationDataModel.setComputationalResourceScheduling(scheduling);
simpleExperiment.setUserConfigurationData(userConfigurationDataModel);
String expId = null;
try {
// expId = (String) registry.add(ParentDataType.EXPERIMENT, simpleExperiment);
} catch (Exception e) {
e.printStackTrace();
}
try {
orchestratorClient.launchExperiment(expId, "airavataToken");
} catch (TException e) {
e.printStackTrace();
}
}
};
thread.start();
try {
thread.join();
} catch (InterruptedException e) {
e.printStackTrace();
}
}
}
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