Examples with AiravataClientException org.apache.airavata.model.error.AiravataClientException used on opensource projects

Example 16 with AiravataClientException

use of org.apache.airavata.model.error.AiravataClientException in project airavata by apache.

the class CreateLaunchExperimentUS3 method createExperimentForStampede.

public static String createExperimentForStampede(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = new ArrayList<InputDataObjectType>();
        InputDataObjectType input = new InputDataObjectType();
        input.setName("echo_input");
        input.setType(DataType.STRING);
        input.setValue("echo_output=Hello World");
        exInputs.add(input);
        List<OutputDataObjectType> exOut = new ArrayList<OutputDataObjectType>();
        OutputDataObjectType output = new OutputDataObjectType();
        output.setName("echo_output");
        output.setType(DataType.STRING);
        output.setValue("");
        exOut.add(output);
        Project project = ProjectModelUtil.createProject("project1", "admin", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "admin", "US3EchoExperimentStatus", "US3EchoStampede", "US3EchoStampede", exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling("stampede.tacc.xsede.org", 1, 1, 1, "development", 0, 0);
        scheduling.setResourceHostId("gsissh-stampede");
        UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
        userConfigurationData.setAiravataAutoSchedule(false);
        userConfigurationData.setOverrideManualScheduledParams(false);
        userConfigurationData.setComputationalResourceScheduling(scheduling);
        simpleExperiment.setUserConfigurationData(userConfigurationData);
        return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
}

Example 17 with AiravataClientException

use of org.apache.airavata.model.error.AiravataClientException in project airavata by apache.

the class CreateLaunchExperimentUS3 method createUS3ExperimentForAlamo.

public static String createUS3ExperimentForAlamo(Airavata.Client client) throws AiravataSystemException, InvalidRequestException, AiravataClientException, TException {
    try {
        List<InputDataObjectType> exInputs = new ArrayList<InputDataObjectType>();
        InputDataObjectType input = new InputDataObjectType();
        input.setName("input");
        input.setType(DataType.URI);
        input.setValue("file:///home/airavata/input/hpcinput.tar");
        InputDataObjectType input1 = new InputDataObjectType();
        input1.setName("walltime");
        input1.setType(DataType.STRING);
        input1.setValue("-walltime=60");
        InputDataObjectType input2 = new InputDataObjectType();
        input2.setName("mgroupcount");
        input2.setType(DataType.STRING);
        input2.setValue("-mgroupcount=1");
        exInputs.add(input);
        exInputs.add(input1);
        exInputs.add(input2);
        List<OutputDataObjectType> exOut = new ArrayList<OutputDataObjectType>();
        OutputDataObjectType output = new OutputDataObjectType();
        output.setName("output");
        output.setType(DataType.URI);
        output.setValue("");
        // OutputDataObjectType output1 = new OutputDataObjectType();
        // output1.setName("stdout");
        // output1.setType(DataType.STDOUT);
        // output1.setValue("");
        // OutputDataObjectType output2 = new OutputDataObjectType();
        // output2.setName("stderr");
        // output2.setType(DataType.STDERR);
        // output2.setValue("");
        exOut.add(output);
        // exOut.add(output1);
        // exOut.add(output2);
        // Project project = ProjectModelUtil.createProject("project1", "admin", "test project");
        // String projectId = client.createProject(project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, "ultrascan_41574ef5-b054-4d03-ab20-2cfe768d5096", "ultrascan", "US3ExperimentStampede", "US3AppStampede", "ultrascan_e76ab5cf-79f6-44df-a244-10a734183fec", exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling("alamo.uthscsa.edu_7b6cf99a-af2e-4e8b-9eff-998a5ef60fe5", 4, 2, 0, "default", 30, 0);
        scheduling.setResourceHostId("alamo.uthscsa.edu_7b6cf99a-af2e-4e8b-9eff-998a5ef60fe5");
        UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
        userConfigurationData.setAiravataAutoSchedule(false);
        userConfigurationData.setOverrideManualScheduledParams(false);
        userConfigurationData.setComputationalResourceScheduling(scheduling);
        /*            AdvancedOutputDataHandling dataHandling = new AdvancedOutputDataHandling();
            dataHandling.setOutputDataDir("/home/airavata/output/");
            userConfigurationData.setAdvanceOutputDataHandling(dataHandling);*/
        simpleExperiment.setUserConfigurationData(userConfigurationData);
        return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
}

Example 18 with AiravataClientException

use of org.apache.airavata.model.error.AiravataClientException in project airavata by apache.

the class RegisterOGCEUS3Application method updateComputeHost.

public static String updateComputeHost(String computeResourceId, String hostName, String hostDesc, ResourceJobManagerType resourceJobManagerType, String monitoringEndPoint, String jobMangerBinPath, SecurityProtocol securityProtocol, int portNumber, String jobManagerCommand) throws TException {
    if (computeResourceId.isEmpty())
        throw new AiravataClientException();
    ResourceJobManager resourceJobManager = RegisterSampleApplicationsUtils.createResourceJobManager(resourceJobManagerType, monitoringEndPoint, jobMangerBinPath, null);
    if (jobManagerCommand != null) {
        Map<JobManagerCommand, String> jobManagerCommandStringMap = new HashMap<JobManagerCommand, String>();
        jobManagerCommandStringMap.put(JobManagerCommand.SUBMISSION, jobManagerCommand);
        resourceJobManager.setJobManagerCommands(jobManagerCommandStringMap);
    }
    SSHJobSubmission sshJobSubmission = new SSHJobSubmission();
    sshJobSubmission.setResourceJobManager(resourceJobManager);
    sshJobSubmission.setSecurityProtocol(securityProtocol);
    sshJobSubmission.setSshPort(portNumber);
    airavataClient.addSSHJobSubmissionDetails(new AuthzToken(""), computeResourceId, 1, sshJobSubmission);
    ComputeResourceDescription computeResourceDescription = airavataClient.getComputeResource(new AuthzToken(""), computeResourceId);
    computeResourceDescription.getJobSubmissionInterfacesIterator();
    SCPDataMovement scpDataMovement = new SCPDataMovement();
    scpDataMovement.setSecurityProtocol(securityProtocol);
    scpDataMovement.setSshPort(portNumber);
    airavataClient.addSCPDataMovementDetails(new AuthzToken(""), computeResourceId, DMType.COMPUTE_RESOURCE, 1, scpDataMovement);
    return computeResourceId;
}

Example 19 with AiravataClientException

use of org.apache.airavata.model.error.AiravataClientException in project airavata by apache.

the class RegisterSampleApplications method registerUnicoreEndpoint.

public static String registerUnicoreEndpoint(String hostName, String hostDesc, JobSubmissionProtocol protocol, SecurityProtocol securityProtocol) throws TException {
    ComputeResourceDescription computeResourceDescription = RegisterSampleApplicationsUtils.createComputeResourceDescription(hostName, hostDesc, null, null);
    fsdResourceId = airavataClient.registerComputeResource(new AuthzToken(""), computeResourceDescription);
    if (fsdResourceId.isEmpty())
        throw new AiravataClientException();
    System.out.println("FSD Compute ResourceID: " + fsdResourceId);
    JobSubmissionInterface jobSubmission = RegisterSampleApplicationsUtils.createJobSubmissionInterface(fsdResourceId, protocol, 2);
    UnicoreJobSubmission ucrJobSubmission = new UnicoreJobSubmission();
    ucrJobSubmission.setSecurityProtocol(securityProtocol);
    ucrJobSubmission.setUnicoreEndPointURL(unicoreEndPointURL);
    // ucrJobSubmission.setAuthenticationMode(AuthenticationMode.MYPROXY_ISSUED);
    jobSubmission.setJobSubmissionProtocol(JobSubmissionProtocol.UNICORE);
    airavataClient.addUNICOREJobSubmissionDetails(new AuthzToken(""), fsdResourceId, 0, ucrJobSubmission);
    return jobSubmission.getJobSubmissionInterfaceId();
}

Example 20 with AiravataClientException

use of org.apache.airavata.model.error.AiravataClientException in project airavata by apache.

the class RegisterSampleApplications method registerComputeHost.

public String registerComputeHost(String hostName, String hostDesc, ResourceJobManagerType resourceJobManagerType, String monitoringEndPoint, String jobMangerBinPath, SecurityProtocol securityProtocol, int portNumber, String jobManagerCommand, List<BatchQueue> batchQueues) throws TException {
    ComputeResourceDescription computeResourceDescription = RegisterSampleApplicationsUtils.createComputeResourceDescription(hostName, hostDesc, null, null);
    computeResourceDescription.setBatchQueues(batchQueues);
    String computeResourceId = airavataClient.registerComputeResource(new AuthzToken(""), computeResourceDescription);
    if (computeResourceId.isEmpty())
        throw new AiravataClientException();
    ResourceJobManager resourceJobManager = RegisterSampleApplicationsUtils.createResourceJobManager(resourceJobManagerType, monitoringEndPoint, jobMangerBinPath, null);
    Map<JobManagerCommand, String> jobManagerCommandStringMap = new HashMap<JobManagerCommand, String>();
    if (resourceJobManagerType == ResourceJobManagerType.SLURM) {
        jobManagerCommandStringMap.put(JobManagerCommand.SUBMISSION, "sbatch");
        jobManagerCommandStringMap.put(JobManagerCommand.JOB_MONITORING, "squeue");
        jobManagerCommandStringMap.put(JobManagerCommand.DELETION, "scancel");
        resourceJobManager.setJobManagerCommands(jobManagerCommandStringMap);
    } else if (resourceJobManagerType == ResourceJobManagerType.PBS) {
        jobManagerCommandStringMap.put(JobManagerCommand.SUBMISSION, "qsub");
        jobManagerCommandStringMap.put(JobManagerCommand.JOB_MONITORING, "qstat");
        jobManagerCommandStringMap.put(JobManagerCommand.DELETION, "qdel");
        resourceJobManager.setJobManagerCommands(jobManagerCommandStringMap);
    }
    // TODO - set job manage commands for UGE and LSF type compute resources.
    // TODO - set parallelism command
    SSHJobSubmission sshJobSubmission = new SSHJobSubmission();
    sshJobSubmission.setResourceJobManager(resourceJobManager);
    sshJobSubmission.setSecurityProtocol(securityProtocol);
    sshJobSubmission.setSshPort(portNumber);
    sshJobSubmission.setMonitorMode(MonitorMode.JOB_EMAIL_NOTIFICATION_MONITOR);
    airavataClient.addSSHJobSubmissionDetails(new AuthzToken(""), computeResourceId, 1, sshJobSubmission);
    SCPDataMovement scpDataMovement = new SCPDataMovement();
    scpDataMovement.setSecurityProtocol(securityProtocol);
    scpDataMovement.setSshPort(portNumber);
    airavataClient.addSCPDataMovementDetails(new AuthzToken(""), computeResourceId, DMType.COMPUTE_RESOURCE, 1, scpDataMovement);
    return computeResourceId;
}