Examples with ExperimentModel org.apache.airavata.model.experiment.ExperimentModel used on opensource projects

Example 26 with ExperimentModel

use of org.apache.airavata.model.experiment.ExperimentModel in project airavata by apache.

the class CreateLaunchExperiment method createExperimentForStampedeAmber.

public static String createExperimentForStampedeAmber(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), amberAppId);
        // }
        for (InputDataObjectType inputDataObjectType : exInputs) {
            if (inputDataObjectType.getName().equalsIgnoreCase("Heat_Restart_File")) {
                inputDataObjectType.setValue("file://ogce@stampede.xsede.org:/scratch/01437/ogce/gta-work-dirs/PROCESS_e0610a6c-5778-4a69-a004-f440e29194af/02_Heat.rst");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Production_Control_File")) {
                inputDataObjectType.setValue("file://ogce@stampede.xsede.org:/scratch/01437/ogce/gta-work-dirs/PROCESS_e0610a6c-5778-4a69-a004-f440e29194af/03_Prod.in");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Parameter_Topology_File")) {
                inputDataObjectType.setValue("file://ogce@stampede.xsede.org:/scratch/01437/ogce/gta-work-dirs/PROCESS_e0610a6c-5778-4a69-a004-f440e29194af/prmtop");
            }
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), amberAppId);
        Project project = ProjectModelUtil.createProject("default", "admin", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "admin", "sshEchoExperiment", "SimpleEchoBR", amberAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), amberAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(stampedeHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 4, 1, 1, "normal", 20, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 27 with ExperimentModel

use of org.apache.airavata.model.experiment.ExperimentModel in project airavata by apache.

the class CreateLaunchExperiment method createMPIExperimentForFSD.

public static String createMPIExperimentForFSD(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), mpiAppId);
        for (InputDataObjectType inputDataObjectType : exInputs) {
            if (inputDataObjectType.getName().equalsIgnoreCase("Sample_Input")) {
                inputDataObjectType.setValue("");
            }
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), mpiAppId);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, "default", "admin", "mpiExperiment", "HelloMPI", mpiAppId, null);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), mpiAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(unicoreHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 2, 1, 2, "normal", 30, 1048576);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    userConfigurationData.setGenerateCert(false);
                    userConfigurationData.setUserDN("");
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 28 with ExperimentModel

use of org.apache.airavata.model.experiment.ExperimentModel in project airavata by apache.

the class CreateLaunchExperimentUS3 method createUS3ExperimentForStampede.

public static String createUS3ExperimentForStampede(Airavata.Client client) throws AiravataSystemException, InvalidRequestException, AiravataClientException, TException {
    try {
        List<InputDataObjectType> exInputs = new ArrayList<InputDataObjectType>();
        InputDataObjectType input = new InputDataObjectType();
        input.setName("input");
        input.setType(DataType.URI);
        input.setValue("file:///home/sgg/chathuri/laptop_backup/airavata/ultrascan_input/hpcinput.tar");
        InputDataObjectType input1 = new InputDataObjectType();
        input1.setName("walltime");
        input1.setType(DataType.STRING);
        input1.setValue("-walltime=60");
        InputDataObjectType input2 = new InputDataObjectType();
        input2.setName("mgroupcount");
        input2.setType(DataType.STRING);
        input2.setValue("-mgroupcount=1");
        exInputs.add(input);
        exInputs.add(input1);
        exInputs.add(input2);
        List<OutputDataObjectType> exOut = new ArrayList<OutputDataObjectType>();
        OutputDataObjectType output = new OutputDataObjectType();
        output.setName("output");
        output.setType(DataType.URI);
        output.setValue("");
        // OutputDataObjectType output1 = new OutputDataObjectType();
        // output1.setName("stdout");
        // output1.setType(DataType.STDOUT);
        // output1.setValue("");
        // OutputDataObjectType output2 = new OutputDataObjectType();
        // output2.setName("stderr");
        // output2.setType(DataType.STDERR);
        // output2.setValue("");
        exOut.add(output);
        // exOut.add(output1);
        // exOut.add(output2);
        Project project = ProjectModelUtil.createProject("project1", "admin", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "ultrascan", "US3ExperimentStampede", "US3AppStampede", "ultrascan_7ce6cd43-622c-44e0-87c5-fb7a6528c799", exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling("stampede.tacc.xsede.org_e59e046f-e0e1-49c4-8475-2fab2e35d044", 32, 2, 0, "normal", 30, 0);
        scheduling.setResourceHostId("stampede.tacc.xsede.org_e59e046f-e0e1-49c4-8475-2fab2e35d044");
        UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
        userConfigurationData.setAiravataAutoSchedule(false);
        userConfigurationData.setOverrideManualScheduledParams(false);
        userConfigurationData.setComputationalResourceScheduling(scheduling);
        /*            AdvancedOutputDataHandling dataHandling = new AdvancedOutputDataHandling();
            dataHandling.setOutputDataDir("/home/sgg/chathuri/laptop_backup/airavata");
            userConfigurationData.setAdvanceOutputDataHandling(dataHandling);*/
        simpleExperiment.setUserConfigurationData(userConfigurationData);
        return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
}

Example 29 with ExperimentModel

use of org.apache.airavata.model.experiment.ExperimentModel in project airavata by apache.

the class CreateLaunchExperimentUS3 method createExperimentForTrestles.

// public static void addDescriptors() throws AiravataAPIInvocationException,ApplicationSettingsException  {
// try {
// UltrascanDocumentCreator documentCreator = new UltrascanDocumentCreator(getAiravataAPI());
// documentCreator.createMPIPBSDocsTrestles();
// documentCreator.createEchoPBSDocsforTestles();
// documentCreator.createEchoSlurmDocsofStampede();
// documentCreator.createMPISLURMDocsStampede();
// } catch (AiravataAPIInvocationException e) {
// logger.error("Unable to create airavata API", e.getMessage());
// throw new AiravataAPIInvocationException(e);
// } catch (ApplicationSettingsException e) {
// logger.error("Unable to create airavata API", e.getMessage());
// throw new ApplicationSettingsException(e.getMessage());
// }
// }
// private static AiravataAPI getAiravataAPI() throws AiravataAPIInvocationException, ApplicationSettingsException {
// AiravataAPI airavataAPI;
// try {
// String sysUser = ClientSettings.getSetting(DEFAULT_USER);
// String gateway = ClientSettings.getSetting(DEFAULT_GATEWAY);
// airavataAPI = AiravataAPIFactory.getAPI(gateway, sysUser);
// } catch (AiravataAPIInvocationException e) {
// logger.error("Unable to create airavata API", e.getMessage());
// throw new AiravataAPIInvocationException(e);
// } catch (ApplicationSettingsException e) {
// logger.error("Unable to create airavata API", e.getMessage());
// throw new ApplicationSettingsException(e.getMessage());
// }
// return airavataAPI;
// }
public static String createExperimentForTrestles(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = new ArrayList<InputDataObjectType>();
        InputDataObjectType input = new InputDataObjectType();
        input.setName("echo_input");
        input.setType(DataType.STRING);
        input.setValue("echo_output=Hello World");
        exInputs.add(input);
        List<OutputDataObjectType> exOut = new ArrayList<OutputDataObjectType>();
        OutputDataObjectType output = new OutputDataObjectType();
        output.setName("echo_output");
        output.setType(DataType.STRING);
        output.setValue("");
        exOut.add(output);
        Project project = ProjectModelUtil.createProject("project1", "admin", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "admin", "US3EchoExperimentTrestles", "US3EchoTrestles", "US3EchoTrestles", exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling("trestles.sdsc.edu", 1, 1, 1, "shared", 0, 0);
        scheduling.setResourceHostId("gsissh-trestles");
        UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
        userConfigurationData.setAiravataAutoSchedule(false);
        userConfigurationData.setOverrideManualScheduledParams(false);
        userConfigurationData.setComputationalResourceScheduling(scheduling);
        simpleExperiment.setUserConfigurationData(userConfigurationData);
        return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
}

Example 30 with ExperimentModel

use of org.apache.airavata.model.experiment.ExperimentModel in project airavata by apache.

the class CreateLaunchExperimentUS3 method createUS3ExperimentForLonestar.

public static String createUS3ExperimentForLonestar(Airavata.Client client) throws AiravataSystemException, InvalidRequestException, AiravataClientException, TException {
    try {
        List<InputDataObjectType> exInputs = new ArrayList<InputDataObjectType>();
        InputDataObjectType input = new InputDataObjectType();
        input.setName("input");
        input.setType(DataType.URI);
        input.setValue("file:///home/airavata/input/hpcinput.tar");
        InputDataObjectType input1 = new InputDataObjectType();
        input1.setName("walltime");
        input1.setType(DataType.STRING);
        input1.setValue("-walltime=60");
        InputDataObjectType input2 = new InputDataObjectType();
        input2.setName("mgroupcount");
        input2.setType(DataType.STRING);
        input2.setValue("-mgroupcount=1");
        exInputs.add(input);
        exInputs.add(input1);
        exInputs.add(input2);
        List<OutputDataObjectType> exOut = new ArrayList<OutputDataObjectType>();
        OutputDataObjectType output = new OutputDataObjectType();
        output.setName("output");
        output.setType(DataType.URI);
        output.setValue("");
        // OutputDataObjectType output1 = new OutputDataObjectType();
        // output1.setName("stdout");
        // output1.setType(DataType.STDOUT);
        // output1.setValue("");
        // OutputDataObjectType output2 = new OutputDataObjectType();
        // output2.setName("stderr");
        // output2.setType(DataType.STDERR);
        // output2.setValue("");
        exOut.add(output);
        // exOut.add(output1);
        // exOut.add(output2);
        // Project project = ProjectModelUtil.createProject("project1", "admin", "test project");
        // String projectId = client.createProject(project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, "ultrascan_41574ef5-b054-4d03-ab20-2cfe768d5096", "ultrascan", "US3ExperimentLonestar", "US3AppLonestar", "ultrascan_e76ab5cf-79f6-44df-a244-10a734183fec", exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling("lonestar.tacc.teragrid.org_2e0273bc-324b-419b-9786-38a360d44772", 12, 2, 0, "normal", 30, 0);
        scheduling.setResourceHostId("lonestar.tacc.teragrid.org_2e0273bc-324b-419b-9786-38a360d44772");
        UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
        userConfigurationData.setAiravataAutoSchedule(false);
        userConfigurationData.setOverrideManualScheduledParams(false);
        userConfigurationData.setComputationalResourceScheduling(scheduling);
        /*            AdvancedOutputDataHandling dataHandling = new AdvancedOutputDataHandling();
            dataHandling.setOutputDataDir("/home/airavata/output/");
            userConfigurationData.setAdvanceOutputDataHandling(dataHandling);*/
        simpleExperiment.setUserConfigurationData(userConfigurationData);
        return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
}