Examples with GnuParser org.apache.commons.cli.GnuParser used on opensource projects

Example 71 with GnuParser

use of org.apache.commons.cli.GnuParser in project Cloud9 by lintool.

the class HadoopAlign method main.

@SuppressWarnings("static-access")
public static void main(String[] args) throws IOException {
    options = new Options();
    options.addOption(OptionBuilder.withDescription("path to XML-formatted parallel corpus").withArgName("path").hasArg().isRequired().create(INPUT_OPTION));
    options.addOption(OptionBuilder.withDescription("path to work/output directory on HDFS").withArgName("path").hasArg().isRequired().create(WORK_OPTION));
    options.addOption(OptionBuilder.withDescription("two-letter collection language code").withArgName("en|de|fr|zh|es|ar|tr").hasArg().isRequired().create(FLANG_OPTION));
    options.addOption(OptionBuilder.withDescription("two-letter collection language code").withArgName("en|de|fr|zh|es|ar|tr").hasArg().isRequired().create(ELANG_OPTION));
    options.addOption(OptionBuilder.withDescription("number of IBM Model 1 iterations").withArgName("positive integer").hasArg().create(MODEL1_OPTION));
    options.addOption(OptionBuilder.withDescription("number of HMM iterations").withArgName("positive integer").hasArg().create(HMM_OPTION));
    options.addOption(OptionBuilder.withDescription("truncate/stem text or not").create(TRUNCATE_OPTION));
    options.addOption(OptionBuilder.withDescription("number of reducers").withArgName("positive integer").hasArg().create(REDUCE_OPTION));
    options.addOption(OptionBuilder.withDescription("Hadoop option to load external jars").withArgName("jar packages").hasArg().create(LIBJARS_OPTION));
    CommandLine cmdline;
    CommandLineParser parser = new GnuParser();
    try {
        cmdline = parser.parse(options, args);
    } catch (ParseException exp) {
        printUsage();
        System.err.println("Error parsing command line: " + exp.getMessage());
        return;
    }
    String bitextPath = cmdline.getOptionValue(INPUT_OPTION);
    String workDir = cmdline.getOptionValue(WORK_OPTION);
    String srcLang = cmdline.getOptionValue(FLANG_OPTION);
    String trgLang = cmdline.getOptionValue(ELANG_OPTION);
    int model1Iters = cmdline.hasOption(MODEL1_OPTION) ? Integer.parseInt(cmdline.getOptionValue(MODEL1_OPTION)) : 0;
    int hmmIters = cmdline.hasOption(HMM_OPTION) ? Integer.parseInt(cmdline.getOptionValue(HMM_OPTION)) : 0;
    if (model1Iters + hmmIters == 0) {
        System.err.println("Please enter a positive number of iterations for either Model 1 or HMM");
        printUsage();
        return;
    }
    boolean isTruncate = cmdline.hasOption(TRUNCATE_OPTION) ? true : false;
    int numReducers = cmdline.hasOption(REDUCE_OPTION) ? Integer.parseInt(cmdline.getOptionValue(REDUCE_OPTION)) : 50;
    HadoopAlignConfig hac = new HadoopAlignConfig(workDir, trgLang, srcLang, bitextPath, model1Iters, hmmIters, // use null word
    true, // use variational bayes
    false, // use word truncation
    isTruncate, // alpha
    0.00f);
    hac.setHMMHomogeneous(false);
    hac.set("mapreduce.map.memory.mb", "2048");
    hac.set("mapreduce.map.java.opts", "-Xmx2048m");
    hac.set("mapreduce.reduce.memory.mb", "2048");
    hac.set("mapreduce.reduce.java.opts", "-Xmx2048m");
    hac.setHMMp0(0.2);
    hac.setMaxSentLen(15);
    doAlignment(50, numReducers, hac);
}

Example 72 with GnuParser

use of org.apache.commons.cli.GnuParser in project Cloud9 by lintool.

the class FileMerger method run.

@Override
public /**
   * TODO: add in hadoop configuration
   */
int run(String[] args) throws IOException {
    Options options = new Options();
    options.addOption(HELP_OPTION, false, "print the help message");
    options.addOption(OptionBuilder.withArgName(PATH_INDICATOR).hasArg().withDescription("input file or directory").create(INPUT_OPTION));
    options.addOption(OptionBuilder.withArgName(PATH_INDICATOR).hasArg().withDescription("output file").create(OUTPUT_OPTION));
    options.addOption(OptionBuilder.withArgName(INTEGER_INDICATOR).hasArg().withDescription("number of mappers (default to 0 and hence local merge mode, set to positive value to enable cluster merge mode)").create(MAPPER_OPTION));
    options.addOption(OptionBuilder.withArgName("property=value").hasArgs(2).withValueSeparator().withDescription("assign value for given property").create("D"));
    options.addOption(TEXT_FILE_INPUT_FORMAT, false, "input file in sequence format");
    options.addOption(DELETE_SOURCE_OPTION, false, "delete sources after merging");
    int mapperTasks = 0;
    boolean deleteSource = DELETE_SOURCE;
    boolean textFileFormat = TEXT_FILE_INPUT;
    String inputPath = "";
    String outputPath = "";
    GenericOptionsParser genericOptionsParser = new GenericOptionsParser(args);
    Configuration configuration = genericOptionsParser.getConfiguration();
    CommandLineParser parser = new GnuParser();
    HelpFormatter formatter = new HelpFormatter();
    try {
        CommandLine line = parser.parse(options, args);
        if (line.hasOption(HELP_OPTION)) {
            formatter.printHelp(FileMerger.class.getName(), options);
            System.exit(0);
        }
        if (line.hasOption(INPUT_OPTION)) {
            inputPath = line.getOptionValue(INPUT_OPTION);
        } else {
            throw new ParseException("Parsing failed due to " + INPUT_OPTION + " not initialized...");
        }
        if (line.hasOption(OUTPUT_OPTION)) {
            outputPath = line.getOptionValue(OUTPUT_OPTION);
        } else {
            throw new ParseException("Parsing failed due to " + OUTPUT_OPTION + " not initialized...");
        }
        if (line.hasOption(MAPPER_OPTION)) {
            mapperTasks = Integer.parseInt(line.getOptionValue(MAPPER_OPTION));
            if (mapperTasks <= 0) {
                sLogger.info("Warning: " + MAPPER_OPTION + " is not positive, merge in local model...");
                mapperTasks = 0;
            }
        }
        if (line.hasOption(DELETE_SOURCE_OPTION)) {
            deleteSource = true;
        }
        if (line.hasOption(TEXT_FILE_INPUT_FORMAT)) {
            textFileFormat = true;
        }
    } catch (ParseException pe) {
        System.err.println(pe.getMessage());
        formatter.printHelp(FileMerger.class.getName(), options);
        System.exit(0);
    } catch (NumberFormatException nfe) {
        System.err.println(nfe.getMessage());
        System.exit(0);
    }
    try {
        merge(configuration, inputPath, outputPath, mapperTasks, textFileFormat, deleteSource);
    } catch (InstantiationException ie) {
        ie.printStackTrace();
    } catch (IllegalAccessException iae) {
        iae.printStackTrace();
    }
    return 0;
}

Example 73 with GnuParser

use of org.apache.commons.cli.GnuParser in project saga by timurstrekalov.

the class Main method main.

public static void main(final String[] args) throws IOException, ParseException {
    logger.debug("Starting...");
    final Option baseDirOpt = new Option("b", "base-dir", true, "Base directory for test search");
    final Option includeOpt = new Option("i", "include", true, "Comma-separated list of Ant-style paths to the tests to run");
    final Option excludeOpt = new Option("e", "exclude", true, "Comma-separated list of Ant-style paths to the tests to exclude from run");
    final Option outputDirOpt = new Option("o", "output-dir", true, "The output directory for coverage reports");
    final Option outputInstrumentedFilesOpt = new Option("f", "output-instrumented-files", false, "Whether to output instrumented files (default is false)");
    final Option noInstrumentPatternOpt = new Option("n", "no-instrument-pattern", true, "Regular expression patterns to match classes to exclude from instrumentation");
    noInstrumentPatternOpt.setArgs(Option.UNLIMITED_VALUES);
    final Option sourcesToPreloadOpt = new Option("p", "preload-sources", true, "Comma-separated list of Ant-style paths to files to preload");
    final Option sourcesToPreloadEncodingOpt = new Option(null, "preload-sources-encoding", true, "Encoding to use when preloading sources");
    final Option threadCountOpt = new Option("t", "thread-count", true, "The maximum number of threads to use (defaults to the number of cores)");
    final Option outputStrategyOpt = new Option("s", "output-strategy", true, "Coverage report output strategy. One of " + Arrays.toString(OutputStrategy.values()));
    final Option includeInlineScriptsOpt = new Option("d", "include-inline-scripts", false, "Whether to include inline scripts into instrumentation by default (default is false)");
    final Option backgroundJavaScriptTimeoutOpt = new Option("j", "background-javascript-timeout", true, "How long to wait for background JavaScript to finish running (in milliseconds, default is 5 minutes)");
    final Option browserVersionOpt = new Option("v", "browser-version", true, "Determines the browser and version profile that HtmlUnit will simulate");
    final Option reportFormatsOpt = new Option(null, "report-formats", true, "A comma-separated list of formats of the reports to be generated. Valid values are: HTML, RAW, CSV, PDF");
    final Option sortByOpt = new Option(null, "sort-by", true, "The column to sort by, one of 'file', 'statements', 'executed' or 'coverage' (default is 'coverage')");
    final Option orderOpt = new Option(null, "order", true, "The order of sorting, one of 'asc' or 'ascending', 'desc' or 'descending' (default is 'ascending')");
    final Option helpOpt = new Option("h", "help", false, "Print this message");
    final Options options = new Options();
    options.addOption(baseDirOpt);
    options.addOption(includeOpt);
    options.addOption(excludeOpt);
    options.addOption(outputDirOpt);
    options.addOption(outputInstrumentedFilesOpt);
    options.addOption(noInstrumentPatternOpt);
    options.addOption(threadCountOpt);
    options.addOption(outputStrategyOpt);
    options.addOption(includeInlineScriptsOpt);
    options.addOption(helpOpt);
    options.addOption(sourcesToPreloadOpt);
    options.addOption(sourcesToPreloadEncodingOpt);
    options.addOption(backgroundJavaScriptTimeoutOpt);
    options.addOption(browserVersionOpt);
    options.addOption(reportFormatsOpt);
    options.addOption(sortByOpt);
    options.addOption(orderOpt);
    logger.debug("Finished configuring options");
    try {
        CommandLineParser parser = new GnuParser();
        CommandLine line = parser.parse(options, args, false);
        logger.debug("Parsed the arguments, take 1");
        baseDirOpt.setRequired(true);
        outputDirOpt.setRequired(true);
        options.addOption(baseDirOpt);
        options.addOption(outputDirOpt);
        if (line.hasOption(helpOpt.getLongOpt())) {
            printHelpAndExit(options);
        }
        parser = new GnuParser();
        line = parser.parse(options, args);
        logger.debug("Parsed the arguments, take 2");
        final String baseDir = line.getOptionValue(baseDirOpt.getLongOpt());
        final String includes = line.getOptionValue(includeOpt.getLongOpt());
        final String excludes = line.getOptionValue(excludeOpt.getLongOpt());
        final File outputDir = new File(line.getOptionValue(outputDirOpt.getLongOpt()));
        final CoverageGenerator gen = CoverageGeneratorFactory.newInstance(baseDir, outputDir);
        final Config config = gen.getConfig();
        config.setIncludes(includes);
        config.setExcludes(excludes);
        if (line.hasOption(outputInstrumentedFilesOpt.getLongOpt())) {
            config.setOutputInstrumentedFiles(true);
        }
        config.setNoInstrumentPatterns(line.getOptionValues(noInstrumentPatternOpt.getLongOpt()));
        config.setSourcesToPreload(line.getOptionValue(sourcesToPreloadOpt.getLongOpt()));
        config.setOutputStrategy(line.getOptionValue(outputStrategyOpt.getLongOpt()));
        final String threadCount = line.getOptionValue(threadCountOpt.getLongOpt());
        if (threadCount != null) {
            try {
                config.setThreadCount(Integer.parseInt(threadCount));
            } catch (final Exception e) {
                System.err.println("Invalid thread count");
                printHelpAndExit(options);
            }
        }
        if (line.hasOption(includeInlineScriptsOpt.getLongOpt())) {
            config.setIncludeInlineScripts(true);
        }
        final String backgroundJavaScriptTimeout = line.getOptionValue(backgroundJavaScriptTimeoutOpt.getLongOpt());
        if (backgroundJavaScriptTimeout != null) {
            try {
                config.setBackgroundJavaScriptTimeout(Long.valueOf(backgroundJavaScriptTimeout));
            } catch (final Exception e) {
                System.err.println("Invalid timeout");
                printHelpAndExit(options);
            }
        }
        config.setBrowserVersion(line.getOptionValue(browserVersionOpt.getLongOpt()));
        config.setReportFormats(line.getOptionValue(reportFormatsOpt.getLongOpt()));
        config.setSortBy(line.getOptionValue(sortByOpt.getLongOpt()));
        config.setOrder(line.getOptionValue(orderOpt.getLongOpt()));
        logger.debug("Configured the coverage generator, running");
        gen.instrumentAndGenerateReports();
    } catch (final MissingOptionException e) {
        System.err.println(e.getMessage());
        printHelpAndExit(options);
    } catch (final UnrecognizedOptionException e) {
        System.err.println(e.getMessage());
        printHelpAndExit(options);
    } catch (final ParseException e) {
        System.err.println(e.getMessage());
        System.exit(1);
    }
}

Example 74 with GnuParser

use of org.apache.commons.cli.GnuParser in project mysql_perf_analyzer by yahoo.

the class App method main.

/* -p --port 9090 
	 * -r --webcontextroot webapps 
	 * -l --logpath logpath 
	 * -w --war webapp war file name
	 */
public static void main(String[] args) throws Exception {
    App myServer = new App();
    CommandLineParser parser = new GnuParser();
    Options options = getAvaliableCommandLineOptions();
    System.out.println(new Date() + " Usage: java -classpath ... com.yahoo.dba.tools.myperfserver.App -j jettyhome " + "-p port -c webcontextroot -k workingDir -l logpath -w war_file");
    readOptionsFromCommandLine(args, parser, options, myServer);
    System.setProperty("logPath", myServer.getLogDirectoryPath());
    PID_FILE = myServer.getWarFile().substring(0, myServer.getWarFile().indexOf('.')) + ".pid";
    checksRunningOfAnotherServerInstance();
    runServer(myServer);
}

Example 75 with GnuParser

use of org.apache.commons.cli.GnuParser in project midpoint by Evolveum.

the class AbstractWebServiceClient method parseCommandLine.

private void parseCommandLine(String[] args) throws ParseException {
    CommandLineParser cliParser = new GnuParser();
    commandLine = cliParser.parse(options, args, true);
    if (commandLine.hasOption('h')) {
        printHelp();
        System.exit(0);
    }
    if (commandLine.hasOption('v')) {
        verbose = true;
    }
}