Examples with Option org.apache.commons.cli.Option used on opensource projects

Example 36 with Option

use of org.apache.commons.cli.Option in project databus by linkedin.

the class CheckpointSerializerMain method createOptions.

@SuppressWarnings("static-access")
private static Options createOptions() {
    Option helpOption = OptionBuilder.withLongOpt(HELP_OPT_NAME).withDescription(HELP_OPT_DESCR).create(HELP_OPT_CHAR);
    Option clientPropsOption = OptionBuilder.withLongOpt(CLIENT_PROPS_FILE_OPT_NAME).withDescription(CLIENT_PROPS_FILE_OPT_DESCR).hasArg().withArgName("properties_file").create(CLIENT_PROPS_FILE_OPT_CHAR);
    Option cp3PropsOption = OptionBuilder.withLongOpt(CP3_PROPS_FILE_OPT_NAME).withDescription(CP3_PROPS_FILE_OPT_DESCR).hasArg().withArgName("properties_file").create(CP3_PROPS_FILE_OPT_CHAR);
    Option propsPrefixOption = OptionBuilder.withLongOpt(PROPS_PREFIX_OPT_NAME).withDescription(PROPS_PREFIX_OPT_DESCR).hasArg().withArgName("prefix_string").create(PROPS_PREFIX_OPT_CHAR);
    Option sourcesOption = OptionBuilder.withLongOpt(SOURCES_OPT_NAME).withDescription(SOURCES_OPT_DESCR).hasArg().withArgName("sources_list").create(SOURCES_OPT_CHAR);
    Option scnOptOption = OptionBuilder.withLongOpt(SCN_OPT_NAME).withDescription(SCN_OPT_DESCR).hasArg().withArgName("sequence_number").create(SCN_OPT_CHAR);
    Option actionOption = OptionBuilder.withLongOpt(ACTION_OPT_NAME).withDescription(ACTION_OPT_DESCR).hasArg().withArgName("action").create(ACTION_OPT_CHAR);
    Option sinceScnOptOption = OptionBuilder.withLongOpt(SINCE_SCN_OPT_NAME).withDescription(SINCE_SCN_OPT_DESCR).hasArg().withArgName("sequence_number").create(SINCE_SCN_OPT_CHAR);
    Option startScnOptOption = OptionBuilder.withLongOpt(START_SCN_OPT_NAME).withDescription(START_SCN_OPT_DESCR).hasArg().withArgName("sequence_number").create(START_SCN_OPT_CHAR);
    Option targetScnOptOption = OptionBuilder.withLongOpt(TARGET_SCN_OPT_NAME).withDescription(TARGET_SCN_OPT_DESCR).hasArg().withArgName("sequence_number").create(TARGET_SCN_OPT_CHAR);
    Option typeOption = OptionBuilder.withLongOpt(TYPE_OPT_NAME).withDescription(TYPE_OPT_DESCR).hasArg().withArgName("checkpoint_type").create(TYPE_OPT_CHAR);
    Option bootstrapSourceOption = OptionBuilder.withLongOpt(BOOTSTRAP_SOURCE_OPT_NAME).withDescription(BOOTSTRAP_SOURCE_OPT_DESCR).hasArg().withArgName("bootstrap_source_name").create(BOOTSTRAP_SOURCE_OPT_CHAR);
    Options options = new Options();
    options.addOption(helpOption);
    options.addOption(actionOption);
    options.addOption(clientPropsOption);
    options.addOption(cp3PropsOption);
    options.addOption(propsPrefixOption);
    options.addOption(sourcesOption);
    options.addOption(scnOptOption);
    options.addOption(sinceScnOptOption);
    options.addOption(startScnOptOption);
    options.addOption(targetScnOptOption);
    options.addOption(typeOption);
    options.addOption(bootstrapSourceOption);
    return options;
}

Example 37 with Option

use of org.apache.commons.cli.Option in project Cloud9 by lintool.

the class LocalClusteringDriver method main.

//  private static final String input="points_input";
@SuppressWarnings({ "static-access" })
public static void main(String[] args) {
    Options options = new Options();
    options.addOption(new Option(KMEANS, "initialize with k-means"));
    options.addOption(new Option(HELP, "display help options"));
    options.addOption(OptionBuilder.withArgName("num").hasArg().withDescription("input path").create(POINTS));
    options.addOption(OptionBuilder.withArgName("num").hasArg().withDescription("output path").create(COMPONENTS));
    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("result path").create(OUTPUT));
    CommandLine cmdline = null;
    CommandLineParser parser = new GnuParser();
    try {
        cmdline = parser.parse(options, args);
    } catch (ParseException exp) {
        System.err.println("Error parsing command line: " + exp.getMessage());
    }
    if (!cmdline.hasOption(OUTPUT)) {
        System.out.println("args: " + Arrays.toString(args));
        HelpFormatter formatter = new HelpFormatter();
        formatter.setWidth(120);
        formatter.printHelp(LocalClusteringDriver.class.getName(), options);
        System.exit(-1);
    }
    if (cmdline.hasOption(HELP)) {
        System.out.println("args: " + Arrays.toString(args));
        HelpFormatter formatter = new HelpFormatter();
        formatter.setWidth(120);
        formatter.printHelp(LocalClusteringDriver.class.getName(), options);
        System.exit(-1);
    }
    int numComponents = cmdline.hasOption(COMPONENTS) ? Integer.parseInt(cmdline.getOptionValue(COMPONENTS)) : 3;
    int numPoints = cmdline.hasOption(POINTS) ? Integer.parseInt(cmdline.getOptionValue(POINTS)) : 100000;
    String output = cmdline.getOptionValue(OUTPUT);
    System.out.println(output);
    System.out.println("Number of points: " + numPoints);
    System.out.println("Number of components in mixture: " + numComponents);
    UnivariateGaussianMixtureModel sourceModel = new UnivariateGaussianMixtureModel(numComponents);
    for (int i = 0; i < numComponents; i++) {
        PVector param = new PVector(2);
        param.array[0] = RANDOM.nextInt(100);
        param.array[1] = RANDOM.nextFloat() * 3;
        sourceModel.param[i] = param;
        sourceModel.weight[i] = RANDOM.nextInt(10) + 1;
    }
    sourceModel.normalizeWeights();
    System.out.println("Initial mixture model:\n" + sourceModel + "\n");
    // Draw points from initial mixture model and compute the n clusters
    Point[] points = sourceModel.drawRandomPoints(numPoints);
    UnivariateGaussianMixtureModel learnedModel = null;
    if (cmdline.hasOption(KMEANS)) {
        System.out.println("Running k-means to initialize clusters...");
        List<Point>[] clusters = KMeans.run(points, numComponents);
        double[] means = new double[numComponents];
        int cnt = 0;
        for (List<Point> cluster : clusters) {
            double tmp = 0.0;
            for (Point p : cluster) {
                tmp += p.value;
            }
            means[cnt] = tmp / cluster.size();
            cnt++;
        }
        System.out.println("Cluster means: " + Arrays.toString(means) + "\n");
        learnedModel = ExpectationMaximization.initialize(points, means);
    } else {
        learnedModel = ExpectationMaximization.initialize(points, numComponents);
    }
    Path outputPoi = new Path(output);
    try {
        FileSystem fs = FileSystem.get(new Configuration());
        fs.delete(outputPoi, true);
        FSDataOutputStream pointfile = fs.create(new Path(output + "/points"));
        for (int i = 0; i < numPoints; i++) {
            pointfile.write((Double.toString(points[i].value) + "\n").getBytes());
        }
        pointfile.flush();
        pointfile.close();
        FSDataOutputStream clusterfile = fs.create(new Path(output + "/cluster0"));
        for (int i = 0; i < numComponents; i++) {
            clusterfile.write((i + " " + Double.toString(learnedModel.weight[i]) + " " + learnedModel.param[i].array[0] + " " + learnedModel.param[i].array[1] + "\n").getBytes());
        }
        clusterfile.flush();
        clusterfile.close();
    } catch (IOException exp) {
        exp.printStackTrace();
    }
    System.out.println("** Ready to run EM **\n");
    System.out.println("Initial mixture model:\n" + learnedModel + "\n");
    learnedModel = ExpectationMaximization.run(points, learnedModel);
    System.out.println("Mixure model estimated using EM: \n" + learnedModel + "\n");
}

Example 38 with Option

use of org.apache.commons.cli.Option in project saga by timurstrekalov.

the class Main method main.

public static void main(final String[] args) throws IOException, ParseException {
    logger.debug("Starting...");
    final Option baseDirOpt = new Option("b", "base-dir", true, "Base directory for test search");
    final Option includeOpt = new Option("i", "include", true, "Comma-separated list of Ant-style paths to the tests to run");
    final Option excludeOpt = new Option("e", "exclude", true, "Comma-separated list of Ant-style paths to the tests to exclude from run");
    final Option outputDirOpt = new Option("o", "output-dir", true, "The output directory for coverage reports");
    final Option outputInstrumentedFilesOpt = new Option("f", "output-instrumented-files", false, "Whether to output instrumented files (default is false)");
    final Option noInstrumentPatternOpt = new Option("n", "no-instrument-pattern", true, "Regular expression patterns to match classes to exclude from instrumentation");
    noInstrumentPatternOpt.setArgs(Option.UNLIMITED_VALUES);
    final Option sourcesToPreloadOpt = new Option("p", "preload-sources", true, "Comma-separated list of Ant-style paths to files to preload");
    final Option sourcesToPreloadEncodingOpt = new Option(null, "preload-sources-encoding", true, "Encoding to use when preloading sources");
    final Option threadCountOpt = new Option("t", "thread-count", true, "The maximum number of threads to use (defaults to the number of cores)");
    final Option outputStrategyOpt = new Option("s", "output-strategy", true, "Coverage report output strategy. One of " + Arrays.toString(OutputStrategy.values()));
    final Option includeInlineScriptsOpt = new Option("d", "include-inline-scripts", false, "Whether to include inline scripts into instrumentation by default (default is false)");
    final Option backgroundJavaScriptTimeoutOpt = new Option("j", "background-javascript-timeout", true, "How long to wait for background JavaScript to finish running (in milliseconds, default is 5 minutes)");
    final Option browserVersionOpt = new Option("v", "browser-version", true, "Determines the browser and version profile that HtmlUnit will simulate");
    final Option reportFormatsOpt = new Option(null, "report-formats", true, "A comma-separated list of formats of the reports to be generated. Valid values are: HTML, RAW, CSV, PDF");
    final Option sortByOpt = new Option(null, "sort-by", true, "The column to sort by, one of 'file', 'statements', 'executed' or 'coverage' (default is 'coverage')");
    final Option orderOpt = new Option(null, "order", true, "The order of sorting, one of 'asc' or 'ascending', 'desc' or 'descending' (default is 'ascending')");
    final Option helpOpt = new Option("h", "help", false, "Print this message");
    final Options options = new Options();
    options.addOption(baseDirOpt);
    options.addOption(includeOpt);
    options.addOption(excludeOpt);
    options.addOption(outputDirOpt);
    options.addOption(outputInstrumentedFilesOpt);
    options.addOption(noInstrumentPatternOpt);
    options.addOption(threadCountOpt);
    options.addOption(outputStrategyOpt);
    options.addOption(includeInlineScriptsOpt);
    options.addOption(helpOpt);
    options.addOption(sourcesToPreloadOpt);
    options.addOption(sourcesToPreloadEncodingOpt);
    options.addOption(backgroundJavaScriptTimeoutOpt);
    options.addOption(browserVersionOpt);
    options.addOption(reportFormatsOpt);
    options.addOption(sortByOpt);
    options.addOption(orderOpt);
    logger.debug("Finished configuring options");
    try {
        CommandLineParser parser = new GnuParser();
        CommandLine line = parser.parse(options, args, false);
        logger.debug("Parsed the arguments, take 1");
        baseDirOpt.setRequired(true);
        outputDirOpt.setRequired(true);
        options.addOption(baseDirOpt);
        options.addOption(outputDirOpt);
        if (line.hasOption(helpOpt.getLongOpt())) {
            printHelpAndExit(options);
        }
        parser = new GnuParser();
        line = parser.parse(options, args);
        logger.debug("Parsed the arguments, take 2");
        final String baseDir = line.getOptionValue(baseDirOpt.getLongOpt());
        final String includes = line.getOptionValue(includeOpt.getLongOpt());
        final String excludes = line.getOptionValue(excludeOpt.getLongOpt());
        final File outputDir = new File(line.getOptionValue(outputDirOpt.getLongOpt()));
        final CoverageGenerator gen = CoverageGeneratorFactory.newInstance(baseDir, outputDir);
        final Config config = gen.getConfig();
        config.setIncludes(includes);
        config.setExcludes(excludes);
        if (line.hasOption(outputInstrumentedFilesOpt.getLongOpt())) {
            config.setOutputInstrumentedFiles(true);
        }
        config.setNoInstrumentPatterns(line.getOptionValues(noInstrumentPatternOpt.getLongOpt()));
        config.setSourcesToPreload(line.getOptionValue(sourcesToPreloadOpt.getLongOpt()));
        config.setOutputStrategy(line.getOptionValue(outputStrategyOpt.getLongOpt()));
        final String threadCount = line.getOptionValue(threadCountOpt.getLongOpt());
        if (threadCount != null) {
            try {
                config.setThreadCount(Integer.parseInt(threadCount));
            } catch (final Exception e) {
                System.err.println("Invalid thread count");
                printHelpAndExit(options);
            }
        }
        if (line.hasOption(includeInlineScriptsOpt.getLongOpt())) {
            config.setIncludeInlineScripts(true);
        }
        final String backgroundJavaScriptTimeout = line.getOptionValue(backgroundJavaScriptTimeoutOpt.getLongOpt());
        if (backgroundJavaScriptTimeout != null) {
            try {
                config.setBackgroundJavaScriptTimeout(Long.valueOf(backgroundJavaScriptTimeout));
            } catch (final Exception e) {
                System.err.println("Invalid timeout");
                printHelpAndExit(options);
            }
        }
        config.setBrowserVersion(line.getOptionValue(browserVersionOpt.getLongOpt()));
        config.setReportFormats(line.getOptionValue(reportFormatsOpt.getLongOpt()));
        config.setSortBy(line.getOptionValue(sortByOpt.getLongOpt()));
        config.setOrder(line.getOptionValue(orderOpt.getLongOpt()));
        logger.debug("Configured the coverage generator, running");
        gen.instrumentAndGenerateReports();
    } catch (final MissingOptionException e) {
        System.err.println(e.getMessage());
        printHelpAndExit(options);
    } catch (final UnrecognizedOptionException e) {
        System.err.println(e.getMessage());
        printHelpAndExit(options);
    } catch (final ParseException e) {
        System.err.println(e.getMessage());
        System.exit(1);
    }
}

Example 39 with Option

use of org.apache.commons.cli.Option in project solo by b3log.

the class Starter method main.

/**
     * Main.
     *
     * @param args the specified arguments
     * @throws java.lang.Exception if start failed
     */
public static void main(final String[] args) throws Exception {
    final Logger logger = Logger.getLogger(Starter.class);
    final Options options = new Options();
    final Option listenPortOpt = Option.builder("lp").longOpt("listen_port").argName("LISTEN_PORT").hasArg().desc("listen port, default is 8080").build();
    options.addOption(listenPortOpt);
    final Option serverSchemeOpt = Option.builder("ss").longOpt("server_scheme").argName("SERVER_SCHEME").hasArg().desc("browser visit protocol, default is http").build();
    options.addOption(serverSchemeOpt);
    final Option serverHostOpt = Option.builder("sh").longOpt("server_host").argName("SERVER_HOST").hasArg().desc("browser visit domain name, default is localhost").build();
    options.addOption(serverHostOpt);
    final Option serverPortOpt = Option.builder("sp").longOpt("server_port").argName("SERVER_PORT").hasArg().desc("browser visit port, default is 8080").build();
    options.addOption(serverPortOpt);
    final Option staticServerSchemeOpt = Option.builder("sss").longOpt("static_server_scheme").argName("STATIC_SERVER_SCHEME").hasArg().desc("browser visit static resource protocol, default is http").build();
    options.addOption(staticServerSchemeOpt);
    final Option staticServerHostOpt = Option.builder("ssh").longOpt("static_server_host").argName("STATIC_SERVER_HOST").hasArg().desc("browser visit static resource domain name, default is localhost").build();
    options.addOption(staticServerHostOpt);
    final Option staticServerPortOpt = Option.builder("ssp").longOpt("static_server_port").argName("STATIC_SERVER_PORT").hasArg().desc("browser visit static resource port, default is 8080").build();
    options.addOption(staticServerPortOpt);
    final Option runtimeModeOpt = Option.builder("rm").longOpt("runtime_mode").argName("RUNTIME_MODE").hasArg().desc("runtime mode (DEVELOPMENT/PRODUCTION), default is DEVELOPMENT").build();
    options.addOption(runtimeModeOpt);
    options.addOption("h", "help", false, "print help for the command");
    final HelpFormatter helpFormatter = new HelpFormatter();
    final CommandLineParser commandLineParser = new DefaultParser();
    CommandLine commandLine;
    final boolean isWindows = System.getProperty("os.name").toLowerCase().contains("windows");
    final String cmdSyntax = isWindows ? "java -cp WEB-INF/lib/*;WEB-INF/classes org.b3log.solo.Starter" : "java -cp WEB-INF/lib/*:WEB-INF/classes org.b3log.solo.Starter";
    final String header = "\nSolo is a blogging system written in Java, feel free to create your or your team own blog.\nSolo 是一个用 Java 实现的博客系统，为你或你的团队创建个博客吧。\n\n";
    final String footer = "\nReport bugs or request features please visit our project website: https://github.com/b3log/solo\n\n";
    try {
        commandLine = commandLineParser.parse(options, args);
    } catch (final ParseException e) {
        helpFormatter.printHelp(cmdSyntax, header, options, footer, true);
        return;
    }
    if (commandLine.hasOption("h")) {
        helpFormatter.printHelp(cmdSyntax, header, options, footer, true);
        return;
    }
    String portArg = commandLine.getOptionValue("listen_port");
    if (!Strings.isNumeric(portArg)) {
        portArg = "8080";
    }
    String serverScheme = commandLine.getOptionValue("server_scheme");
    Latkes.setServerScheme(serverScheme);
    String serverHost = commandLine.getOptionValue("server_host");
    Latkes.setServerHost(serverHost);
    String serverPort = commandLine.getOptionValue("server_port");
    Latkes.setServerPort(serverPort);
    String staticServerScheme = commandLine.getOptionValue("static_server_scheme");
    Latkes.setStaticServerScheme(staticServerScheme);
    String staticServerHost = commandLine.getOptionValue("static_server_host");
    Latkes.setStaticServerHost(staticServerHost);
    String staticServerPort = commandLine.getOptionValue("static_server_port");
    Latkes.setStaticServerPort(staticServerPort);
    String runtimeMode = commandLine.getOptionValue("runtime_mode");
    if (null != runtimeMode) {
        Latkes.setRuntimeMode(RuntimeMode.valueOf(runtimeMode));
    }
    // For Latke IoC 
    Latkes.setScanPath("org.b3log.solo");
    logger.info("Standalone mode, see [https://github.com/b3log/solo/wiki/standalone_mode] for more details.");
    Latkes.initRuntimeEnv();
    // POM structure in dev env
    String webappDirLocation = "src/main/webapp/";
    final File file = new File(webappDirLocation);
    if (!file.exists()) {
        // production environment
        webappDirLocation = ".";
    }
    final int port = Integer.valueOf(portArg);
    final Server server = new Server(port);
    final WebAppContext root = new WebAppContext();
    // Use parent class loader
    root.setParentLoaderPriority(true);
    root.setContextPath("/");
    root.setDescriptor(webappDirLocation + "/WEB-INF/web.xml");
    root.setResourceBase(webappDirLocation);
    server.setHandler(root);
    try {
        server.start();
    } catch (final Exception e) {
        logger.log(Level.ERROR, "Server start failed", e);
        System.exit(-1);
    }
    serverScheme = Latkes.getServerScheme();
    serverHost = Latkes.getServerHost();
    serverPort = Latkes.getServerPort();
    final String contextPath = Latkes.getContextPath();
    try {
        Desktop.getDesktop().browse(new URI(serverScheme + "://" + serverHost + ":" + serverPort + contextPath));
    } catch (final Throwable e) {
    // Ignored
    }
    server.join();
}

Example 40 with Option

use of org.apache.commons.cli.Option in project goci by EBISPOT.

the class ParentMappingApplication method bindOptions.

private static Options bindOptions() {
    Options options = new Options();
    // help
    Option helpOption = new Option("h", "help", false, "Print the help");
    options.addOption(helpOption);
    // add output file arguments
    Option outputFileOption = new Option("o", "output", true, "The output file to write the mapped traits to");
    outputFileOption.setArgName("file");
    outputFileOption.setRequired(true);
    options.addOption(outputFileOption);
    return options;
}