Examples with HoodieIOException org.apache.hudi.exception.HoodieIOException used on opensource projects

Example 36 with HoodieIOException

use of org.apache.hudi.exception.HoodieIOException in project hudi by apache.

the class HoodieMergeOnReadTableInputFormat method createRealtimeFileStatusUnchecked.

/**
 * Creates {@link RealtimeFileStatus} for the file-slice where base file is NOT present
 */
private static RealtimeFileStatus createRealtimeFileStatusUnchecked(HoodieLogFile latestLogFile, Stream<HoodieLogFile> logFiles, String basePath, Option<HoodieInstant> latestCompletedInstantOpt, Option<HoodieVirtualKeyInfo> virtualKeyInfoOpt) {
    List<HoodieLogFile> sortedLogFiles = logFiles.sorted(HoodieLogFile.getLogFileComparator()).collect(Collectors.toList());
    try {
        RealtimeFileStatus rtFileStatus = new RealtimeFileStatus(latestLogFile.getFileStatus(), basePath, sortedLogFiles, false, virtualKeyInfoOpt);
        if (latestCompletedInstantOpt.isPresent()) {
            HoodieInstant latestCompletedInstant = latestCompletedInstantOpt.get();
            checkState(latestCompletedInstant.isCompleted());
            rtFileStatus.setMaxCommitTime(latestCompletedInstant.getTimestamp());
        }
        return rtFileStatus;
    } catch (IOException e) {
        throw new HoodieIOException(String.format("Failed to init %s", RealtimeFileStatus.class.getSimpleName()), e);
    }
}

Example 37 with HoodieIOException

use of org.apache.hudi.exception.HoodieIOException in project hudi by apache.

the class RepairsCommand method removeCorruptedPendingCleanAction.

@CliCommand(value = "repair corrupted clean files", help = "repair corrupted clean files")
public void removeCorruptedPendingCleanAction() {
    HoodieTableMetaClient client = HoodieCLI.getTableMetaClient();
    HoodieTimeline cleanerTimeline = HoodieCLI.getTableMetaClient().getActiveTimeline().getCleanerTimeline();
    LOG.info("Inspecting pending clean metadata in timeline for corrupted files");
    cleanerTimeline.filterInflightsAndRequested().getInstants().forEach(instant -> {
        try {
            CleanerUtils.getCleanerPlan(client, instant);
        } catch (AvroRuntimeException e) {
            LOG.warn("Corruption found. Trying to remove corrupted clean instant file: " + instant);
            HoodieActiveTimeline.deleteInstantFile(client.getFs(), client.getMetaPath(), instant);
        } catch (IOException ioe) {
            if (ioe.getMessage().contains("Not an Avro data file")) {
                LOG.warn("Corruption found. Trying to remove corrupted clean instant file: " + instant);
                HoodieActiveTimeline.deleteInstantFile(client.getFs(), client.getMetaPath(), instant);
            } else {
                throw new HoodieIOException(ioe.getMessage(), ioe);
            }
        }
    });
}

Example 38 with HoodieIOException

use of org.apache.hudi.exception.HoodieIOException in project hudi by apache.

the class AbstractHoodieLogRecordReader method scan.

public synchronized void scan(Option<List<String>> keys) {
    currentInstantLogBlocks = new ArrayDeque<>();
    progress = 0.0f;
    totalLogFiles = new AtomicLong(0);
    totalRollbacks = new AtomicLong(0);
    totalCorruptBlocks = new AtomicLong(0);
    totalLogBlocks = new AtomicLong(0);
    totalLogRecords = new AtomicLong(0);
    HoodieLogFormatReader logFormatReaderWrapper = null;
    HoodieTimeline commitsTimeline = this.hoodieTableMetaClient.getCommitsTimeline();
    HoodieTimeline completedInstantsTimeline = commitsTimeline.filterCompletedInstants();
    HoodieTimeline inflightInstantsTimeline = commitsTimeline.filterInflights();
    try {
        // Get the key field based on populate meta fields config
        // and the table type
        final String keyField = getKeyField();
        // Iterate over the paths
        logFormatReaderWrapper = new HoodieLogFormatReader(fs, logFilePaths.stream().map(logFile -> new HoodieLogFile(new Path(logFile))).collect(Collectors.toList()), readerSchema, readBlocksLazily, reverseReader, bufferSize, !enableFullScan, keyField);
        Set<HoodieLogFile> scannedLogFiles = new HashSet<>();
        while (logFormatReaderWrapper.hasNext()) {
            HoodieLogFile logFile = logFormatReaderWrapper.getLogFile();
            LOG.info("Scanning log file " + logFile);
            scannedLogFiles.add(logFile);
            totalLogFiles.set(scannedLogFiles.size());
            // Use the HoodieLogFileReader to iterate through the blocks in the log file
            HoodieLogBlock logBlock = logFormatReaderWrapper.next();
            final String instantTime = logBlock.getLogBlockHeader().get(INSTANT_TIME);
            totalLogBlocks.incrementAndGet();
            if (logBlock.getBlockType() != CORRUPT_BLOCK && !HoodieTimeline.compareTimestamps(logBlock.getLogBlockHeader().get(INSTANT_TIME), HoodieTimeline.LESSER_THAN_OR_EQUALS, this.latestInstantTime)) {
                // hit a block with instant time greater than should be processed, stop processing further
                break;
            }
            if (logBlock.getBlockType() != CORRUPT_BLOCK && logBlock.getBlockType() != COMMAND_BLOCK) {
                if (!completedInstantsTimeline.containsOrBeforeTimelineStarts(instantTime) || inflightInstantsTimeline.containsInstant(instantTime)) {
                    // hit an uncommitted block possibly from a failed write, move to the next one and skip processing this one
                    continue;
                }
                if (instantRange.isPresent() && !instantRange.get().isInRange(instantTime)) {
                    // filter the log block by instant range
                    continue;
                }
            }
            switch(logBlock.getBlockType()) {
                case HFILE_DATA_BLOCK:
                case AVRO_DATA_BLOCK:
                case PARQUET_DATA_BLOCK:
                    LOG.info("Reading a data block from file " + logFile.getPath() + " at instant " + logBlock.getLogBlockHeader().get(INSTANT_TIME));
                    if (isNewInstantBlock(logBlock) && !readBlocksLazily) {
                        // If this is an avro data block belonging to a different commit/instant,
                        // then merge the last blocks and records into the main result
                        processQueuedBlocksForInstant(currentInstantLogBlocks, scannedLogFiles.size(), keys);
                    }
                    // store the current block
                    currentInstantLogBlocks.push(logBlock);
                    break;
                case DELETE_BLOCK:
                    LOG.info("Reading a delete block from file " + logFile.getPath());
                    if (isNewInstantBlock(logBlock) && !readBlocksLazily) {
                        // If this is a delete data block belonging to a different commit/instant,
                        // then merge the last blocks and records into the main result
                        processQueuedBlocksForInstant(currentInstantLogBlocks, scannedLogFiles.size(), keys);
                    }
                    // store deletes so can be rolled back
                    currentInstantLogBlocks.push(logBlock);
                    break;
                case COMMAND_BLOCK:
                    // Consider the following scenario
                    // (Time 0, C1, Task T1) -> Running
                    // (Time 1, C1, Task T1) -> Failed (Wrote either a corrupt block or a correct
                    // DataBlock (B1) with commitTime C1
                    // (Time 2, C1, Task T1.2) -> Running (Task T1 was retried and the attempt number is 2)
                    // (Time 3, C1, Task T1.2) -> Finished (Wrote a correct DataBlock B2)
                    // Now a logFile L1 can have 2 correct Datablocks (B1 and B2) which are the same.
                    // Say, commit C1 eventually failed and a rollback is triggered.
                    // Rollback will write only 1 rollback block (R1) since it assumes one block is
                    // written per ingestion batch for a file but in reality we need to rollback (B1 & B2)
                    // The following code ensures the same rollback block (R1) is used to rollback
                    // both B1 & B2
                    LOG.info("Reading a command block from file " + logFile.getPath());
                    // This is a command block - take appropriate action based on the command
                    HoodieCommandBlock commandBlock = (HoodieCommandBlock) logBlock;
                    String targetInstantForCommandBlock = logBlock.getLogBlockHeader().get(HoodieLogBlock.HeaderMetadataType.TARGET_INSTANT_TIME);
                    switch(// there can be different types of command blocks
                    commandBlock.getType()) {
                        case ROLLBACK_PREVIOUS_BLOCK:
                            // Rollback the last read log block
                            // Get commit time from last record block, compare with targetCommitTime,
                            // rollback only if equal, this is required in scenarios of invalid/extra
                            // rollback blocks written due to failures during the rollback operation itself
                            // and ensures the same rollback block (R1) is used to rollback both B1 & B2 with
                            // same instant_time
                            int numBlocksRolledBack = 0;
                            totalRollbacks.incrementAndGet();
                            while (!currentInstantLogBlocks.isEmpty()) {
                                HoodieLogBlock lastBlock = currentInstantLogBlocks.peek();
                                // handle corrupt blocks separately since they may not have metadata
                                if (lastBlock.getBlockType() == CORRUPT_BLOCK) {
                                    LOG.info("Rolling back the last corrupted log block read in " + logFile.getPath());
                                    currentInstantLogBlocks.pop();
                                    numBlocksRolledBack++;
                                } else if (targetInstantForCommandBlock.contentEquals(lastBlock.getLogBlockHeader().get(INSTANT_TIME))) {
                                    // rollback last data block or delete block
                                    LOG.info("Rolling back the last log block read in " + logFile.getPath());
                                    currentInstantLogBlocks.pop();
                                    numBlocksRolledBack++;
                                } else if (!targetInstantForCommandBlock.contentEquals(currentInstantLogBlocks.peek().getLogBlockHeader().get(INSTANT_TIME))) {
                                    // invalid or extra rollback block
                                    LOG.warn("TargetInstantTime " + targetInstantForCommandBlock + " invalid or extra rollback command block in " + logFile.getPath());
                                    break;
                                } else {
                                    // this should not happen ideally
                                    LOG.warn("Unable to apply rollback command block in " + logFile.getPath());
                                }
                            }
                            LOG.info("Number of applied rollback blocks " + numBlocksRolledBack);
                            break;
                        default:
                            throw new UnsupportedOperationException("Command type not yet supported.");
                    }
                    break;
                case CORRUPT_BLOCK:
                    LOG.info("Found a corrupt block in " + logFile.getPath());
                    totalCorruptBlocks.incrementAndGet();
                    // If there is a corrupt block - we will assume that this was the next data block
                    currentInstantLogBlocks.push(logBlock);
                    break;
                default:
                    throw new UnsupportedOperationException("Block type not supported yet");
            }
        }
        // merge the last read block when all the blocks are done reading
        if (!currentInstantLogBlocks.isEmpty()) {
            LOG.info("Merging the final data blocks");
            processQueuedBlocksForInstant(currentInstantLogBlocks, scannedLogFiles.size(), keys);
        }
        // Done
        progress = 1.0f;
    } catch (IOException e) {
        LOG.error("Got IOException when reading log file", e);
        throw new HoodieIOException("IOException when reading log file ", e);
    } catch (Exception e) {
        LOG.error("Got exception when reading log file", e);
        throw new HoodieException("Exception when reading log file ", e);
    } finally {
        try {
            if (null != logFormatReaderWrapper) {
                logFormatReaderWrapper.close();
            }
        } catch (IOException ioe) {
            // Eat exception as we do not want to mask the original exception that can happen
            LOG.error("Unable to close log format reader", ioe);
        }
    }
}

Example 39 with HoodieIOException

use of org.apache.hudi.exception.HoodieIOException in project hudi by apache.

the class HoodieLogFormatReader method hasNext.

@Override
public boolean hasNext() {
    if (currentReader == null) {
        return false;
    } else if (currentReader.hasNext()) {
        return true;
    } else if (logFiles.size() > 0) {
        try {
            HoodieLogFile nextLogFile = logFiles.remove(0);
            // First close previous reader only if readBlockLazily is true
            if (!readBlocksLazily) {
                this.currentReader.close();
            } else {
                this.prevReadersInOpenState.add(currentReader);
            }
            this.currentReader = new HoodieLogFileReader(fs, nextLogFile, readerSchema, bufferSize, readBlocksLazily, false, enableInlineReading, recordKeyField);
        } catch (IOException io) {
            throw new HoodieIOException("unable to initialize read with log file ", io);
        }
        LOG.info("Moving to the next reader for logfile " + currentReader.getLogFile());
        return hasNext();
    }
    return false;
}

Example 40 with HoodieIOException

use of org.apache.hudi.exception.HoodieIOException in project hudi by apache.

the class HoodieLogFormatWriter method appendBlocks.

@Override
public AppendResult appendBlocks(List<HoodieLogBlock> blocks) throws IOException, InterruptedException {
    // Find current version
    HoodieLogFormat.LogFormatVersion currentLogFormatVersion = new HoodieLogFormatVersion(HoodieLogFormat.CURRENT_VERSION);
    FSDataOutputStream originalOutputStream = getOutputStream();
    long startPos = originalOutputStream.getPos();
    long sizeWritten = 0;
    // HUDI-2655. here we wrap originalOutputStream to ensure huge blocks can be correctly written
    FSDataOutputStream outputStream = new FSDataOutputStream(originalOutputStream, new FileSystem.Statistics(fs.getScheme()), startPos);
    for (HoodieLogBlock block : blocks) {
        long startSize = outputStream.size();
        // 1. Write the magic header for the start of the block
        outputStream.write(HoodieLogFormat.MAGIC);
        // bytes for header
        byte[] headerBytes = HoodieLogBlock.getLogMetadataBytes(block.getLogBlockHeader());
        // content bytes
        byte[] content = block.getContentBytes();
        // bytes for footer
        byte[] footerBytes = HoodieLogBlock.getLogMetadataBytes(block.getLogBlockFooter());
        // 2. Write the total size of the block (excluding Magic)
        outputStream.writeLong(getLogBlockLength(content.length, headerBytes.length, footerBytes.length));
        // 3. Write the version of this log block
        outputStream.writeInt(currentLogFormatVersion.getVersion());
        // 4. Write the block type
        outputStream.writeInt(block.getBlockType().ordinal());
        // 5. Write the headers for the log block
        outputStream.write(headerBytes);
        // 6. Write the size of the content block
        outputStream.writeLong(content.length);
        // 7. Write the contents of the data block
        outputStream.write(content);
        // 8. Write the footers for the log block
        outputStream.write(footerBytes);
        // 9. Write the total size of the log block (including magic) which is everything written
        // until now (for reverse pointer)
        // Update: this information is now used in determining if a block is corrupt by comparing to the
        // block size in header. This change assumes that the block size will be the last data written
        // to a block. Read will break if any data is written past this point for a block.
        outputStream.writeLong(outputStream.size() - startSize);
        // HUDI-2655. Check the size written to avoid log blocks whose size overflow.
        if (outputStream.size() == Integer.MAX_VALUE) {
            throw new HoodieIOException("Blocks appended may overflow. Please decrease log block size or log block amount");
        }
        sizeWritten += outputStream.size() - startSize;
    }
    // Flush all blocks to disk
    flush();
    AppendResult result = new AppendResult(logFile, startPos, sizeWritten);
    // roll over if size is past the threshold
    rolloverIfNeeded();
    return result;
}