use of org.apache.stanbol.ontologymanager.sources.clerezza.GraphContentInputSource in project stanbol by apache.
the class ScopeResource method postOntology.
@POST
@Consumes({ MULTIPART_FORM_DATA })
@Produces({ TEXT_HTML, TEXT_PLAIN, RDF_XML, TURTLE, X_TURTLE, N3 })
public Response postOntology(MultiPartBody data, @PathParam("scopeid") String scopeid, @Context HttpHeaders headers) {
log.info(" post(MultiPartBody data) scope: {}", scopeid);
ResponseBuilder rb;
scope = onm.getScope(scopeid);
// TODO remove and make sure it is set across the method
rb = Response.status(BAD_REQUEST);
IRI location = null, library = null;
// If found, it takes precedence over location.
FormFile file = null;
String format = null;
Set<String> keys = new HashSet<String>();
if (data.getFormFileParameterValues("file").length > 0) {
file = data.getFormFileParameterValues("file")[0];
}
// else {
if (data.getTextParameterValues("format").length > 0) {
String value = data.getTextParameterValues("format")[0];
if (!value.equals("auto")) {
format = value;
}
}
if (data.getTextParameterValues("url").length > 0) {
String value = data.getTextParameterValues("url")[0];
try {
// To throw 400 if malformed.
URI.create(value);
location = IRI.create(value);
} catch (Exception ex) {
log.error("Malformed IRI for param url " + value, ex);
throw new WebApplicationException(ex, BAD_REQUEST);
}
}
if (data.getTextParameterValues("library").length > 0) {
String value = data.getTextParameterValues("library")[0];
try {
// To throw 400 if malformed.
URI.create(value);
library = IRI.create(value);
} catch (Exception ex) {
log.error("Malformed IRI for param library " + value, ex);
throw new WebApplicationException(ex, BAD_REQUEST);
}
}
if (data.getTextParameterValues("stored").length > 0) {
String value = data.getTextParameterValues("stored")[0];
keys.add(value);
}
log.debug("Parameters:");
log.debug("file: {}", file);
log.debug("url: {}", location);
log.debug("format: {}", format);
log.debug("keys: {}", keys);
boolean fileOk = file != null;
// }
if (fileOk || location != null || library != null) {
// File and location take precedence
// src = new GraphContentInputSource(content, format, ontologyProvider.getStore());
// Then add the file
OntologyInputSource<?> src = null;
if (fileOk) {
/*
* Because the ontology provider's load method could fail after only one attempt without
* resetting the stream, we might have to do that ourselves.
*/
List<String> formats;
if (format != null && !format.trim().isEmpty())
formats = Collections.singletonList(format);
else
// The RESTful API has its own list of preferred formats
formats = Arrays.asList(RDF_XML, TURTLE, X_TURTLE, N3, N_TRIPLE, OWL_XML, FUNCTIONAL_OWL, MANCHESTER_OWL, RDF_JSON);
int unsupported = 0, failed = 0;
Iterator<String> itf = formats.iterator();
if (!itf.hasNext())
throw new OntologyLoadingException("No suitable format found or defined.");
do {
String f = itf.next();
try {
// Re-instantiate the stream on every attempt
InputStream content = new ByteArrayInputStream(file.getContent());
// ClerezzaOWLUtils.guessOntologyID(new FileInputStream(file), Parser.getInstance(),
// f);
OWLOntologyID guessed = OWLUtils.guessOntologyID(content, Parser.getInstance(), f);
log.debug("guessed ontology id: {}", guessed);
if (guessed != null && !guessed.isAnonymous() && ontologyProvider.hasOntology(guessed)) {
// rb = Response.status(Status.CONFLICT);
this.submitted = guessed;
if (headers.getAcceptableMediaTypes().contains(MediaType.TEXT_HTML_TYPE)) {
rb.entity(new Viewable("conflict.ftl", new ScopeResultData()));
rb.header(HttpHeaders.CONTENT_TYPE, MediaType.TEXT_HTML + "; charset=utf-8");
}
break;
} else {
content = new ByteArrayInputStream(file.getContent());
log.debug("Recreated input stream for format {}", f);
src = new GraphContentInputSource(content, f, ontologyProvider.getStore());
}
} catch (UnsupportedFormatException e) {
log.warn("POST method failed for media type {}. This should not happen (should fail earlier)", headers.getMediaType());
// rb = Response.status(UNSUPPORTED_MEDIA_TYPE);
unsupported++;
} catch (IOException e) {
log.debug(">>> FAILURE format {} (I/O error)", f);
failed++;
} catch (Exception e) {
// SAXParseException and others
log.debug(">>> FAILURE format {} (parse error)", f);
failed++;
}
} while (src == null && itf.hasNext());
}
if (src != null) {
OWLOntologyID key = scope.getCustomSpace().addOntology(src);
if (key == null || key.isAnonymous())
throw new WebApplicationException(INTERNAL_SERVER_ERROR);
// FIXME ugly but will have to do for the time being
// key.split("::")[1];
String uri = OntologyUtils.encode(key);
// uri = uri.substring((ontologyProvider.getGraphPrefix() + "::").length());
if (uri != null && !uri.isEmpty()) {
rb = Response.seeOther(URI.create("/ontonet/ontology/" + scope.getID() + "/" + uri));
} else
rb = Response.ok();
} else if (rb == null)
rb = Response.status(INTERNAL_SERVER_ERROR);
}
if (!keys.isEmpty()) {
for (String key : keys) scope.getCustomSpace().addOntology(new StoredOntologySource(OntologyUtils.decode(key)));
rb = Response.seeOther(URI.create("/ontonet/ontology/" + scope.getID()));
}
// addCORSOrigin(servletContext, rb, headers);
return rb.build();
}
use of org.apache.stanbol.ontologymanager.sources.clerezza.GraphContentInputSource in project stanbol by apache.
the class SessionResource method postOntology.
@POST
@Consumes({ MULTIPART_FORM_DATA })
@Produces({ WILDCARD })
public Response postOntology(MultiPartBody data, @Context HttpHeaders headers) {
log.debug(" post(FormDataMultiPart data)");
long before = System.currentTimeMillis();
ResponseBuilder rb;
// TODO remove and make sure it is set across the method
rb = Response.status(BAD_REQUEST);
IRI location = null, library = null;
// If found, it takes precedence over location.
FormFile file = null;
String format = null;
Set<String> toAppend = null;
Set<String> keys = new HashSet<String>();
// }
if (data.getFormFileParameterValues("file").length > 0) {
file = data.getFormFileParameterValues("file")[0];
}
// else {
if (data.getTextParameterValues("format").length > 0) {
String value = data.getTextParameterValues("format")[0];
if (!value.equals("auto")) {
format = value;
}
}
if (data.getTextParameterValues("url").length > 0) {
String value = data.getTextParameterValues("url")[0];
try {
// To throw 400 if malformed.
URI.create(value);
location = IRI.create(value);
} catch (Exception ex) {
log.error("Malformed IRI for param url " + value, ex);
throw new WebApplicationException(ex, BAD_REQUEST);
}
}
if (data.getTextParameterValues("library").length > 0) {
String value = data.getTextParameterValues("library")[0];
try {
// To throw 400 if malformed.
URI.create(value);
library = IRI.create(value);
} catch (Exception ex) {
log.error("Malformed IRI for param library " + value, ex);
throw new WebApplicationException(ex, BAD_REQUEST);
}
}
if (data.getTextParameterValues("stored").length > 0) {
String value = data.getTextParameterValues("stored")[0];
keys.add(value);
}
if (data.getTextParameterValues("scope").length > 0) {
String value = data.getTextParameterValues("scope")[0];
log.info("Request to append scope \"{}\".", value);
if (toAppend == null) {
toAppend = new HashSet<String>();
}
toAppend.add(value);
}
boolean fileOk = file != null;
if (fileOk || location != null || library != null) {
// File and location take precedence
// Then add the file
OntologyInputSource<?> src = null;
if (fileOk) {
// File first
Collection<String> formats;
if (format == null || "".equals(format.trim()))
formats = OntologyUtils.getPreferredFormats();
else
formats = Collections.singleton(format);
for (String f : formats) try {
log.debug("Trying format {}.", f);
long b4buf = System.currentTimeMillis();
// Recreate the stream on each attempt
InputStream content = new BufferedInputStream(new ByteArrayInputStream(file.getContent()));
log.debug("Streams created in {} ms", System.currentTimeMillis() - b4buf);
log.debug("Creating ontology input source...");
b4buf = System.currentTimeMillis();
OWLOntologyID guessed = OWLUtils.guessOntologyID(content, Parser.getInstance(), f);
if (guessed != null && !guessed.isAnonymous() && ontologyProvider.hasOntology(guessed)) {
rb = Response.status(Status.CONFLICT);
this.submitted = guessed;
if (headers.getAcceptableMediaTypes().contains(MediaType.TEXT_HTML_TYPE)) {
rb.entity(new Viewable("/imports/409", this));
rb.header(HttpHeaders.CONTENT_TYPE, MediaType.TEXT_HTML + "; charset=utf-8");
}
} else {
content = new BufferedInputStream(new ByteArrayInputStream(file.getContent()));
src = new GraphContentInputSource(content, f, ontologyProvider.getStore());
}
log.debug("Done in {} ms", System.currentTimeMillis() - b4buf);
log.info("SUCCESS parse with format {}.", f);
break;
} catch (OntologyLoadingException e) {
log.debug("FAILURE parse with format {}.", f);
continue;
} catch (IOException e) {
log.debug("FAILURE parse with format {} (I/O error).", f);
continue;
}
log.debug("No more formats to try.");
} else if (location != null) {
try {
src = new RootOntologySource(location);
} catch (Exception e) {
log.error("Failed to load ontology from " + location, e);
throw new WebApplicationException(e, BAD_REQUEST);
}
} else if (library != null) {
// This comes last, since it will most likely have a value.
try {
long beforeLib = System.currentTimeMillis();
log.debug("Creating library source for {}", library);
src = new LibrarySource(library, regMgr);
log.debug("Library source created in {} ms.", System.currentTimeMillis() - beforeLib);
} catch (Exception e) {
log.error("Failed to load ontology library " + library, e);
throw new WebApplicationException(e, INTERNAL_SERVER_ERROR);
}
} else {
log.error("Bad request");
log.error(" file is: {}", file);
throw new WebApplicationException(BAD_REQUEST);
}
if (src != null) {
log.debug("Adding ontology from input source {}", src);
long b4add = System.currentTimeMillis();
OWLOntologyID key = session.addOntology(src);
if (key == null || key.isAnonymous())
throw new WebApplicationException(INTERNAL_SERVER_ERROR);
// FIXME ugly but will have to do for the time being
log.debug("Addition done in {} ms.", System.currentTimeMillis() - b4add);
log.debug("Storage key : {}", key);
// key.split("::")[1];
String uri = OntologyUtils.encode(key);
// uri = uri.substring((ontologyProvider.getGraphPrefix() + "::").length());
if (uri != null && !uri.isEmpty())
rb = Response.seeOther(URI.create("/ontonet/session/" + session.getID() + "/" + uri));
else
rb = Response.seeOther(URI.create("/ontonet/session/" + session.getID()));
} else if (rb == null)
rb = Response.status(INTERNAL_SERVER_ERROR);
}
if (!keys.isEmpty()) {
for (String key : keys) session.addOntology(new StoredOntologySource(OntologyUtils.decode(key)));
rb = Response.seeOther(URI.create("/ontonet/session/" + session.getID()));
}
// Now check scopes
if (toAppend != null && (!toAppend.isEmpty() || (toAppend.isEmpty() && !getAppendedScopes().isEmpty()))) {
for (Scope sc : getAllScopes()) {
// First remove appended scopes not in the list
String scid = sc.getID();
if (!toAppend.contains(scid) && getAppendedScopes().contains(scid)) {
session.detachScope(scid);
log.info("Removed scope \"{}\".", scid);
}
}
for (String scid : toAppend) {
// Then add all the scopes in the list
if (!getAppendedScopes().contains(scid)) {
log.info("Appending scope \"{}\" to session \"{}\".", scid, session.getID());
session.attachScope(scid);
log.info("Appended scope \"{}\".", scid);
}
}
rb = Response.seeOther(URI.create("/ontonet/session/" + session.getID()));
}
// else {
// log.error("Nothing to do with session {}.", session.getID());
// throw new WebApplicationException(BAD_REQUEST);
// }
// rb.header(HttpHeaders.CONTENT_TYPE, TEXT_HTML + "; charset=utf-8");
// addCORSOrigin(servletContext, rb, headers);
log.info("POST ontology completed in {} ms.", System.currentTimeMillis() - before);
return rb.build();
}
use of org.apache.stanbol.ontologymanager.sources.clerezza.GraphContentInputSource in project stanbol by apache.
the class TestOntologyNetworkPersistence method scopePreservesManagedOntologies.
@Test
public void scopePreservesManagedOntologies() throws Exception {
String id = "preserve";
Scope scope = onManager.createOntologyScope(id, new GraphContentInputSource(getClass().getResourceAsStream("/ontologies/mockfoaf.rdf")));
scope.getCustomSpace().addOntology(new GraphContentInputSource(getClass().getResourceAsStream("/ontologies/nonexistentcharacters.owl")));
Collection<OWLOntologyID> cores = scope.getCoreSpace().listManagedOntologies();
Collection<OWLOntologyID> customs = scope.getCustomSpace().listManagedOntologies();
// Simulate Stanbol going down.
log.info("Stanbol going down...");
// but keep the TcProvider
resetOntologyProvider();
resetManagers();
Scope sc = onManager.getScope(id);
assertNotNull(sc);
assertEquals(cores, sc.getCoreSpace().listManagedOntologies());
assertEquals(customs, sc.getCustomSpace().listManagedOntologies());
// XXX Remember that only weak equality is implemented.
assertEquals(scope, sc);
}
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