Examples with Recipe org.apache.stanbol.rules.base.api.Recipe used on opensource projects

Example 31 with Recipe

use of org.apache.stanbol.rules.base.api.Recipe in project stanbol by apache.

the class RecipeList method remove.

public boolean remove(Object o) {
    boolean removed = false;
    for (int i = 0; i < recipes.length && !removed; i++) {
        Recipe recipe = recipes[i];
        if (recipe.equals(o)) {
            Recipe[] recipesCopy = new Recipe[recipes.length - 1];
            System.arraycopy(recipes, 0, recipesCopy, 0, i);
            System.arraycopy(recipes, i + 1, recipesCopy, 0, recipesCopy.length - i);
            recipes = recipesCopy;
            removed = true;
        }
    }
    return removed;
}

Example 32 with Recipe

use of org.apache.stanbol.rules.base.api.Recipe in project stanbol by apache.

the class RefactorEnhancementEngine method initEngine.

/**
     * Method for adding ontologies to the scope core ontology.
     * <ol>
     * <li>Get all the ontologies from the property.</li>
     * <li>Create a base scope.</li>
     * <li>Retrieve the ontology space from the scope.</li>
     * <li>Add the ontologies to the scope via ontology space.</li>
     * </ol>
     */
private void initEngine(RefactorEnhancementEngineConf engineConfiguration) {
    // IRI dulcifierScopeIRI = org.semanticweb.owlapi.model.IRI.create((String) context.getProperties().get(SCOPE));
    String scopeId = engineConfiguration.getScope();
    // Create or get the scope with the configured ID
    try {
        scope = onManager.createOntologyScope(scopeId);
    // No need to deactivate a newly created scope.
    } catch (DuplicateIDException e) {
        scope = onManager.getScope(scopeId);
        onManager.setScopeActive(scopeId, false);
    }
    // All resolvable ontologies stated in the configuration are loaded into the core space.
    OntologySpace ontologySpace = scope.getCoreSpace();
    ontologySpace.tearDown();
    String[] coreScopeOntologySet = engineConfiguration.getScopeCoreOntologies();
    List<String> success = new ArrayList<String>(), failed = new ArrayList<String>();
    try {
        log.info("Will now load requested ontology into the core space of scope '{}'.", scopeId);
        OWLOntologyManager sharedManager = OWLManager.createOWLOntologyManager();
        org.semanticweb.owlapi.model.IRI physicalIRI = null;
        for (int o = 0; o < coreScopeOntologySet.length; o++) {
            String url = coreScopeOntologySet[o];
            try {
                physicalIRI = org.semanticweb.owlapi.model.IRI.create(url);
            } catch (Exception e) {
                failed.add(url);
            }
            try {
                // TODO replace with a Clerezza equivalent
                ontologySpace.addOntology(new RootOntologySource(physicalIRI, sharedManager));
                success.add(url);
            } catch (OWLOntologyCreationException e) {
                log.error("Failed to load ontology from physical location " + physicalIRI + " Continuing with next...", e);
                failed.add(url);
            }
        }
    } catch (UnmodifiableOntologyCollectorException ex) {
        log.error("Ontology space {} was found locked for modification. Cannot populate.", ontologySpace);
    }
    for (String s : success) log.info(" >> {} : SUCCESS", s);
    for (String s : failed) log.info(" >> {} : FAILED", s);
    ontologySpace.setUp();
    // if (!onManager.containsScope(scopeId)) onManager.registerScope(scope);
    onManager.setScopeActive(scopeId, true);
    /*
         * The first thing to do is to create a recipe in the rule store that can be used by the engine to
         * refactor the enhancement graphs.
         */
    String recipeId = engineConfiguration.getRecipeId();
    Recipe recipe = null;
    try {
        recipe = ruleStore.createRecipe(new IRI(recipeId), null);
    } catch (AlreadyExistingRecipeException e1) {
        log.error("A recipe with ID {} already exists in the store.", recipeId);
    }
    if (recipe != null) {
        log.debug("Initialised blank recipe with ID {}", recipeId);
        /*
             * The set of rule to put in the recipe can be provided by the user. A default set of rules is
             * provided in /META-INF/default/seo_rules.sem. Use the property engine.refactor in the felix
             * console to pass to the engine your set of rules.
             */
        String recipeLocation = engineConfiguration.getRecipeLocation();
        InputStream recipeStream = null;
        String recipeString = null;
        if (recipeLocation != null && !recipeLocation.isEmpty()) {
            Dereferencer dereferencer = new DereferencerImpl();
            try {
                recipeStream = dereferencer.resolve(recipeLocation);
                log.debug("Loaded recipe from external source {}", recipeLocation);
            } catch (FileNotFoundException e) {
                log.error("Recipe Stream is null.", e);
            }
        } else {
            // TODO remove this part (or manage it better in the @Activate method).
            String loc = "/META-INF/default/seo_rules.sem";
            recipeStream = getClass().getResourceAsStream(loc);
            log.debug("Loaded default recipe in {}.", loc);
        }
        if (recipeStream != null) {
            BufferedReader reader = new BufferedReader(new InputStreamReader(recipeStream));
            recipeString = "";
            String line = null;
            try {
                while ((line = reader.readLine()) != null) recipeString += line;
            } catch (IOException e) {
                log.error("Failed to load Refactor Engine recipe from stream. Aborting read. ", e);
                recipeString = null;
            }
        }
        log.debug("Recipe content follows :\n{}", recipeString);
        if (recipeString != null) {
            ruleStore.addRulesToRecipe(recipe, recipeString, null);
            log.debug("Added rules to recipe {}", recipeId);
        }
    }
}

Example 33 with Recipe

use of org.apache.stanbol.rules.base.api.Recipe in project stanbol by apache.

the class RefactorEnhancementEngine method computeEnhancements.

@Override
public void computeEnhancements(ContentItem ci) throws EngineException {
    // Prepare the OntoNet environment. First we create the OntoNet session in which run the whole
    final Session session;
    try {
        session = sessionManager.createSession();
    } catch (SessionLimitException e1) {
        throw new EngineException("OntoNet session quota reached. The Refactor Engine requires its own new session to execute.");
    }
    if (session == null)
        throw new EngineException("Failed to create OntoNet session. The Refactor Engine requires its own new session to execute.");
    log.debug("Refactor enhancement job will run in session '{}'.", session.getID());
    // Retrieve and filter the metadata graph for entities recognized by the engines.
    final Graph metadataGraph = ci.getMetadata(), signaturesGraph = new IndexedGraph();
    // FIXME the Stanbol Enhancer vocabulary should be retrieved from somewhere in the enhancer API.
    final IRI ENHANCER_ENTITY_REFERENCE = new IRI("http://fise.iks-project.eu/ontology/entity-reference");
    Iterator<Triple> tripleIt = metadataGraph.filter(null, ENHANCER_ENTITY_REFERENCE, null);
    while (tripleIt.hasNext()) {
        // Get the entity URI
        RDFTerm obj = tripleIt.next().getObject();
        if (!(obj instanceof IRI)) {
            log.warn("Invalid IRI for entity reference {}. Skipping.", obj);
            continue;
        }
        final String entityReference = ((IRI) obj).getUnicodeString();
        log.debug("Trying to resolve entity {}", entityReference);
        // Populate the entity signatures graph, by querying either the Entity Hub or the dereferencer.
        if (engineConfiguration.isEntityHubUsed()) {
            Graph result = populateWithEntity(entityReference, signaturesGraph);
            if (result != signaturesGraph && result != null) {
                log.warn("Entity Hub query added triples to a new graph instead of populating the supplied one!" + " New signatures will be discarded.");
            }
        } else
            try {
                OntologyInputSource<Graph> source = new GraphContentSourceWithPhysicalIRI(dereferencer.resolve(entityReference), org.semanticweb.owlapi.model.IRI.create(entityReference));
                signaturesGraph.addAll(source.getRootOntology());
            } catch (FileNotFoundException e) {
                log.error("Failed to dereference entity " + entityReference + ". Skipping.", e);
                continue;
            }
    }
    try {
        /*
             * The dedicated session for this job will store the following: (1) all the (merged) signatures
             * for all detected entities; (2) the original content metadata graph returned earlier in the
             * chain.
             * 
             * There is no chance that (2) could be null, as it was previously controlled by the JobManager
             * through the canEnhance() method and the computeEnhancement is always called iff the former
             * returns true.
             */
        session.addOntology(new GraphSource(signaturesGraph));
        session.addOntology(new GraphSource(metadataGraph));
    } catch (UnmodifiableOntologyCollectorException e1) {
        throw new EngineException("Cannot add enhancement graph to OntoNet session for refactoring", e1);
    }
    try {
        /*
             * Export the entire session (incl. entities and enhancement graph) as a single merged ontology.
             * 
             * TODO the refactorer should have methods to accommodate an OntologyCollector directly instead.
             */
        OWLOntology ontology = session.export(OWLOntology.class, true);
        log.debug("Refactoring recipe IRI is : " + engineConfiguration.getRecipeId());
        /*
             * We pass the ontology and the recipe IRI to the Refactor that returns the refactored graph
             * expressed by using the given vocabulary.
             * 
             * To perform the refactoring of the ontology to a given vocabulary we use the Stanbol Refactor.
             */
        Recipe recipe = ruleStore.getRecipe(new IRI(engineConfiguration.getRecipeId()));
        log.debug("Recipe {} contains {} rules.", recipe, recipe.getRuleList().size());
        log.debug("The ontology to be refactor is {}", ontology);
        Graph tc = refactorer.graphRefactoring(OWLAPIToClerezzaConverter.owlOntologyToClerezzaGraph(ontology), recipe);
        /*
             * The newly generated ontology is converted to Clarezza format and then added os substitued to
             * the old mGraph.
             */
        if (engineConfiguration.isInGraphAppendMode()) {
            log.debug("Metadata of the content will replace old ones.", this);
        } else {
            metadataGraph.clear();
            log.debug("Content metadata will be appended to the existing ones.", this);
        }
        metadataGraph.addAll(tc);
    } catch (RefactoringException e) {
        String msg = "Refactor engine execution failed on content item " + ci + ".";
        log.error(msg, e);
        throw new EngineException(msg, e);
    } catch (NoSuchRecipeException e) {
        String msg = "Refactor engine could not find recipe " + engineConfiguration.getRecipeId() + " to refactor content item " + ci + ".";
        log.error(msg, e);
        throw new EngineException(msg, e);
    } catch (Exception e) {
        throw new EngineException("Refactor Engine has failed.", e);
    } finally {
        /*
             * The session needs to be destroyed anyhow.
             * 
             * Clear contents before destroying (FIXME only do this until this is implemented in the
             * destroySession() method).
             */
        for (OWLOntologyID id : session.listManagedOntologies()) {
            try {
                String key = ontologyProvider.getKey(id.getOntologyIRI());
                ontologyProvider.getStore().deleteGraph(new IRI(key));
            } catch (Exception ex) {
                log.error("Failed to delete triple collection " + id, ex);
                continue;
            }
        }
        sessionManager.destroySession(session.getID());
    }
}

Example 34 with Recipe

use of org.apache.stanbol.rules.base.api.Recipe in project stanbol by apache.

the class ClerezzaAdapter method main.

public static void main(String[] args) {
    RuleAdapter ruleAdapter = new ClerezzaAdapter();
    try {
        KB kb = RuleParserImpl.parse("http://sssw.org/2012/rules/", new FileInputStream("/Users/mac/Documents/CNR/SSSW2012/construct/exercise3"));
        System.out.println("Rules: " + kb.getRuleList().size());
        Recipe recipe = new RecipeImpl(new IRI("http://sssw.org/2012/rules/"), "Recipe", kb.getRuleList());
        //List<ConstructQuery> jenaRules = (List<ConstructQuery>) ruleAdapter.adaptTo(recipe, ConstructQuery.class);
        String rules = "[ Exercise1: (http://dbpedia.org/resource/Madrid http://dbpedia.org/ontology/locationOf ?location) (?location rdf:type http://dbpedia.org/ontology/Museum) (?location http://dbpedia.org/ontology/numberOfVisitors ?visitors) greaterThan(?visitors '2000000'^^http://www.w3.org/2001/XMLSchema#integer) -> (?location rdf:type http://www.mytravels.com/Itinerary/MadridItinerary) ]";
        //List<com.hp.hpl.jena.reasoner.rulesys.Rule> jenaRules = com.hp.hpl.jena.reasoner.rulesys.Rule.parseRules(rules);
        String spqral = "CONSTRUCT " + "{ ?city a <http://www.mytravels.com/Itinerary/MovieCityItinerary> . " + "   ?city <http://www.w3.org/2000/01/rdf-schema#label> ?cLabel . " + "   ?event a <http://linkedevents.org/ontology/Event> . " + "   ?event <http://linkedevents.org/ontology/atPlace> ?location . " + "   ?location <http://www.w3.org/2000/01/rdf-schema#label> ?lLabel . " + "   ?location <http://www.w3.org/2002/07/owl#sameAs> ?city" + "} " + "WHERE " + "{ " + "   ?city a <http://www.mytravels.com/Itinerary/MovieCityItinerary> . " + "   ?city <http://www.w3.org/2000/01/rdf-schema#label> ?cLabel . " + "   ?event a <http://linkedevents.org/ontology/Event> . " + "   ?event <http://linkedevents.org/ontology/atPlace> ?location . " + "   ?location <http://www.w3.org/2000/01/rdf-schema#label> ?lLabel . " + "   FILTER(?lLabel = ?cLabel) " + "}";
        Model m = ModelFactory.createDefaultModel();
        Model model = FileManager.get().loadModel("/Users/mac/Documents/CNR/SSSW2012/datasets_new/Exercise5_tmp.rdf");
        //for(ConstructQuery constructQuery : jenaRules){
        //Query query = QueryFactory.create(constructQuery.toString(), Syntax.syntaxARQ);
        Query query = QueryFactory.create(spqral, Syntax.syntaxARQ);
        QueryExecution queryExecution = QueryExecutionFactory.create(query, model);
        //System.out.println(constructQuery.toString());
        m.add(queryExecution.execConstruct());
        //}
        FileOutputStream max = new FileOutputStream("/Users/mac/Documents/CNR/SSSW2012/datasets_new/example5.rdf");
        m.write(max);
    } catch (FileNotFoundException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
    }
/*catch (RuleAtomCallExeption e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        } catch (UnavailableRuleObjectException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        } catch (UnsupportedTypeForExportException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        }*/
}

Example 35 with Recipe

use of org.apache.stanbol.rules.base.api.Recipe in project stanbol by apache.

the class RulesResource method getRule.

/**
     * Get a recipe from the rule base (that is the ontology that contains the rules and the recipe). <br/>
     * If the second parameter is not null then the method returns the rule in the recipe identified by that
     * parameter. <br/>
     * 
     * curl -v -X GET http://localhost:8080/kres/rule/http
     * ://kres.iks-project.eu/ontology/meta/rmi.owl#ProvaParentRule
     * 
     * @param uri
     *            {A string contains the IRI full name of the rule.}
     * @return Return: <br/>
     *         200 The rule is retrieved (import declarations point to KReS Services) <br/>
     *         404 The rule does not exists in the manager <br/>
     *         500 Some error occurred
     * 
     */
@GET
@Path("/recipe/{recipe:.+}")
@Produces(value = { KRFormat.RDF_XML, KRFormat.TURTLE, KRFormat.OWL_XML, KRFormat.RDF_JSON, KRFormat.FUNCTIONAL_OWL, KRFormat.MANCHESTER_OWL, MediaType.TEXT_PLAIN })
public Response getRule(@PathParam("recipe") String recipeID, @QueryParam("rule") String ruleID, @Context HttpHeaders headers) {
    Recipe recipe;
    Rule rule;
    ResponseBuilder responseBuilder;
    try {
        URI uri = new URI(recipeID);
        if (uri.getScheme() == null) {
            recipeID = "urn:" + recipeID;
            log.info("The recipe ID is a URI without scheme. The ID is set to " + recipeID);
        }
        recipe = ruleStore.getRecipe(new IRI(recipeID));
        if (ruleID != null && !ruleID.isEmpty()) {
            rule = ruleStore.getRule(recipe, new IRI(ruleID));
            RuleList ruleList = new RuleList();
            ruleList.add(rule);
            recipe = new RecipeImpl(recipe.getRecipeID(), recipe.getRecipeDescription(), ruleList);
        }
        responseBuilder = Response.ok(recipe);
    } catch (NoSuchRecipeException e) {
        log.error(e.getMessage(), e);
        responseBuilder = Response.status(Status.NOT_FOUND);
    } catch (RecipeConstructionException e) {
        log.error(e.getMessage(), e);
        responseBuilder = Response.status(Status.NO_CONTENT);
    } catch (NoSuchRuleInRecipeException e) {
        log.error(e.getMessage(), e);
        responseBuilder = Response.status(Status.NOT_FOUND);
    } catch (URISyntaxException e) {
        log.error(e.getMessage(), e);
        responseBuilder = Response.status(Status.NOT_ACCEPTABLE);
    }
    //        addCORSOrigin(servletContext, responseBuilder, headers);
    return responseBuilder.build();
}