Examples with SaltProject org.corpus_tools.salt.common.SaltProject used on opensource projects

Example 6 with SaltProject

use of org.corpus_tools.salt.common.SaltProject in project ANNIS by korpling.

the class BenchmarkTest method mapSalt_Pcc4282.

@Test
public void mapSalt_Pcc4282() {
    assumeTrue(pcc2CorpusID.size() > 0);
    SaltProject p = annisDao.retrieveAnnotationGraph("pcc2", "4282", null);
    assertEquals(1, p.getCorpusGraphs().size());
}

Example 7 with SaltProject

use of org.corpus_tools.salt.common.SaltProject in project ANNIS by korpling.

the class BenchmarkTest method mapSaltAndSaveXMI_SonderbaresKraeuterBuch.

@Test
public void mapSaltAndSaveXMI_SonderbaresKraeuterBuch() throws IOException {
    assumeTrue(ridgesCorpusID.size() > 0);
    SaltProject p = annisDao.retrieveAnnotationGraph("Ridges_Herbology_Version_2.0", "sonderbares.kraeuterbuch.16175.11-21", null);
    provider.writeTo(p, SaltProject.class, null, null, typeXMI, null, nullStream);
}

Example 8 with SaltProject

use of org.corpus_tools.salt.common.SaltProject in project ANNIS by korpling.

the class GeneralTextExporter method convertText.

@Override
public Exception convertText(String queryAnnisQL, int contextLeft, int contextRight, Set<String> corpora, List<String> keys, String argsAsString, boolean alignmc, WebResource annisResource, Writer out, EventBus eventBus, Map<String, CorpusConfig> corpusConfigs) {
    try {
        if (keys == null || keys.isEmpty()) {
            // auto set
            keys = new LinkedList<>();
            keys.add("tok");
            List<AnnisAttribute> attributes = new LinkedList<>();
            for (String corpus : corpora) {
                attributes.addAll(annisResource.path("corpora").path(urlPathEscape.escape(corpus)).path("annotations").queryParam("fetchvalues", "false").queryParam("onlymostfrequentvalues", "false").get(new AnnisAttributeListType()));
            }
            for (AnnisAttribute a : attributes) {
                if (a.getName() != null) {
                    String[] namespaceAndName = a.getName().split(":", 2);
                    if (namespaceAndName.length > 1) {
                        keys.add(namespaceAndName[1]);
                    } else {
                        keys.add(namespaceAndName[0]);
                    }
                }
            }
        }
        Map<String, String> args = new HashMap<>();
        for (String s : argsAsString.split("&|;")) {
            String[] splitted = s.split("=", 2);
            String key = splitted[0];
            String val = "";
            if (splitted.length > 1) {
                val = splitted[1];
            }
            args.put(key, val);
        }
        int stepSize = 10;
        // 1. Get all the matches as Salt ID
        InputStream matchStream = annisResource.path("search/find/").queryParam("q", Helper.encodeJersey(queryAnnisQL)).queryParam("corpora", StringUtils.join(corpora, ",")).accept(MediaType.TEXT_PLAIN_TYPE).get(InputStream.class);
        try (BufferedReader inReader = new BufferedReader(new InputStreamReader(matchStream, "UTF-8"))) {
            WebResource subgraphRes = annisResource.path("search/subgraph");
            MatchGroup currentMatches = new MatchGroup();
            String currentLine;
            int offset = 0;
            // 2. iterate over all matches and get the sub-graph for a group of matches
            while (!Thread.currentThread().isInterrupted() && (currentLine = inReader.readLine()) != null) {
                Match match = Match.parseFromString(currentLine);
                currentMatches.getMatches().add(match);
                if (currentMatches.getMatches().size() >= stepSize) {
                    WebResource res = subgraphRes.queryParam("left", "" + contextLeft).queryParam("right", "" + contextRight);
                    if (args.containsKey("segmentation")) {
                        res = res.queryParam("segmentation", args.get("segmentation"));
                    }
                    SubgraphFilter filter = getSubgraphFilter();
                    if (filter != null) {
                        res = res.queryParam("filter", filter.name());
                    }
                    Stopwatch stopwatch = Stopwatch.createUnstarted();
                    stopwatch.start();
                    SaltProject p = res.post(SaltProject.class, currentMatches);
                    stopwatch.stop();
                    // export was fast enough
                    if (stopwatch.elapsed(TimeUnit.MILLISECONDS) < 500 && stepSize < 50) {
                        stepSize += 10;
                    }
                    convertText(LegacyGraphConverter.convertToResultSet(p), keys, args, out, offset - currentMatches.getMatches().size());
                    currentMatches.getMatches().clear();
                    if (eventBus != null) {
                        eventBus.post(offset + 1);
                    }
                }
                offset++;
            }
            if (Thread.interrupted()) {
                return new InterruptedException("Exporter job was interrupted");
            }
            // query the left over matches
            if (!currentMatches.getMatches().isEmpty()) {
                WebResource res = subgraphRes.queryParam("left", "" + contextLeft).queryParam("right", "" + contextRight);
                if (args.containsKey("segmentation")) {
                    res = res.queryParam("segmentation", args.get("segmentation"));
                }
                SubgraphFilter filter = getSubgraphFilter();
                if (filter != null) {
                    res = res.queryParam("filter", filter.name());
                }
                SaltProject p = res.post(SaltProject.class, currentMatches);
                convertText(LegacyGraphConverter.convertToResultSet(p), keys, args, out, offset - currentMatches.getMatches().size() - 1);
            }
            offset = 0;
        }
        out.append("\n");
        out.append("\n");
        out.append("finished");
        return null;
    } catch (AnnisQLSemanticsException | AnnisQLSyntaxException | AnnisCorpusAccessException | UniformInterfaceException | IOException ex) {
        return ex;
    }
}

Example 9 with SaltProject

use of org.corpus_tools.salt.common.SaltProject in project ANNIS by korpling.

the class SaltBasedExporter method convertText.

@Override
public Exception convertText(String queryAnnisQL, int contextLeft, int contextRight, Set<String> corpora, List<String> keys, String argsAsString, boolean alignmc, WebResource annisResource, Writer out, EventBus eventBus, Map<String, CorpusConfig> corpusConfigs) {
    CacheManager cacheManager = CacheManager.create();
    try {
        Cache cache = cacheManager.getCache("saltProjectsCache");
        if (keys == null || keys.isEmpty()) {
            // auto set
            keys = new LinkedList<>();
            keys.add("tok");
            List<AnnisAttribute> attributes = new LinkedList<>();
            for (String corpus : corpora) {
                attributes.addAll(annisResource.path("corpora").path(urlPathEscape.escape(corpus)).path("annotations").queryParam("fetchvalues", "false").queryParam("onlymostfrequentvalues", "false").get(new AnnisAttributeListType()));
            }
            for (AnnisAttribute a : attributes) {
                if (a.getName() != null) {
                    String[] namespaceAndName = a.getName().split(":", 2);
                    if (namespaceAndName.length > 1) {
                        keys.add(namespaceAndName[1]);
                    } else {
                        keys.add(namespaceAndName[0]);
                    }
                }
            }
        }
        Map<String, String> args = new HashMap<>();
        for (String s : argsAsString.split("&|;")) {
            String[] splitted = s.split("=", 2);
            String key = splitted[0];
            String val = "";
            if (splitted.length > 1) {
                val = splitted[1];
            }
            args.put(key, val);
        }
        int stepSize = 10;
        int pCounter = 1;
        Map<Integer, Integer> offsets = new HashMap<Integer, Integer>();
        // 1. Get all the matches as Salt ID
        InputStream matchStream = annisResource.path("search/find/").queryParam("q", Helper.encodeJersey(queryAnnisQL)).queryParam("corpora", StringUtils.join(corpora, ",")).accept(MediaType.TEXT_PLAIN_TYPE).get(InputStream.class);
        // get node count for the query
        WebResource resource = Helper.getAnnisWebResource();
        List<QueryNode> nodes = resource.path("query/parse/nodes").queryParam("q", Helper.encodeJersey(queryAnnisQL)).get(new GenericType<List<QueryNode>>() {
        });
        Integer nodeCount = nodes.size();
        try (BufferedReader inReader = new BufferedReader(new InputStreamReader(matchStream, "UTF-8"))) {
            WebResource subgraphRes = annisResource.path("search/subgraph");
            MatchGroup currentMatches = new MatchGroup();
            String currentLine;
            int offset = 1;
            // 2. iterate over all matches and get the sub-graph for a group of matches
            while (!Thread.currentThread().isInterrupted() && (currentLine = inReader.readLine()) != null) {
                Match match = Match.parseFromString(currentLine);
                currentMatches.getMatches().add(match);
                if (currentMatches.getMatches().size() >= stepSize) {
                    WebResource res = subgraphRes.queryParam("left", "" + contextLeft).queryParam("right", "" + contextRight);
                    if (args.containsKey("segmentation")) {
                        res = res.queryParam("segmentation", args.get("segmentation"));
                    }
                    SubgraphFilter filter = getSubgraphFilter();
                    if (filter != null) {
                        res = res.queryParam("filter", filter.name());
                    }
                    Stopwatch stopwatch = Stopwatch.createStarted();
                    SaltProject p = res.post(SaltProject.class, currentMatches);
                    stopwatch.stop();
                    // export was fast enough
                    if (stopwatch.elapsed(TimeUnit.MILLISECONDS) < 500 && stepSize < 50) {
                        stepSize += 10;
                    }
                    convertSaltProject(p, keys, args, alignmc, offset - currentMatches.getMatches().size(), corpusConfigs, out, nodeCount);
                    offsets.put(pCounter, offset - currentMatches.getMatches().size());
                    cache.put(new Element(pCounter++, p));
                    currentMatches.getMatches().clear();
                    if (eventBus != null) {
                        eventBus.post(offset + 1);
                    }
                }
                offset++;
            }
            if (Thread.interrupted()) {
                return new InterruptedException("Exporter job was interrupted");
            }
            // query the left over matches
            if (!currentMatches.getMatches().isEmpty()) {
                WebResource res = subgraphRes.queryParam("left", "" + contextLeft).queryParam("right", "" + contextRight);
                if (args.containsKey("segmentation")) {
                    res = res.queryParam("segmentation", args.get("segmentation"));
                }
                SubgraphFilter filter = getSubgraphFilter();
                if (filter != null) {
                    res = res.queryParam("filter", filter.name());
                }
                SaltProject p = res.post(SaltProject.class, currentMatches);
                convertSaltProject(p, keys, args, alignmc, offset - currentMatches.getMatches().size() - 1, corpusConfigs, out, nodeCount);
                offsets.put(pCounter, offset - currentMatches.getMatches().size() - 1);
                cache.put(new Element(pCounter++, p));
            }
            offset = 1;
        }
        // build the list of ordered match numbers (ordering by occurrence in text)
        getOrderedMatchNumbers();
        @SuppressWarnings("unchecked") List<Integer> cacheKeys = cache.getKeys();
        List<Integer> listOfKeys = new ArrayList<Integer>();
        for (Integer key : cacheKeys) {
            listOfKeys.add(key);
        }
        Collections.sort(listOfKeys);
        for (Integer key : listOfKeys) {
            SaltProject p = (SaltProject) cache.get(key).getObjectValue();
            convertSaltProject(p, keys, args, alignmc, offsets.get(key), corpusConfigs, out, null);
        }
        out.append(System.lineSeparator());
        return null;
    } catch (AnnisQLSemanticsException | AnnisQLSyntaxException | AnnisCorpusAccessException | UniformInterfaceException | IOException | CacheException | IllegalStateException | ClassCastException ex) {
        return ex;
    } finally {
        cacheManager.removalAll();
        cacheManager.shutdown();
    }
}

Example 10 with SaltProject

use of org.corpus_tools.salt.common.SaltProject in project ANNIS by korpling.

the class VisualizerPanel method createInput.

private VisualizerInput createInput() {
    VisualizerInput input = new VisualizerInput();
    input.setAnnisWebServiceURL((String) VaadinSession.getCurrent().getAttribute("AnnisWebService.URL"));
    input.setContextPath(Helper.getContext());
    input.setDotPath((String) VaadinSession.getCurrent().getAttribute("DotPath"));
    input.setId(resultID);
    input.setMarkableExactMap(markersExact);
    input.setMarkableMap(markersCovered);
    input.setMarkedAndCovered(markedAndCovered);
    input.setResult(result);
    input.setVisibleTokenAnnos(visibleTokenAnnos);
    input.setSegmentationName(segmentationName);
    if (instanceConfig != null && instanceConfig.getFont() != null) {
        input.setFont(instanceConfig.getFont());
    }
    if (entry != null) {
        input.setMappings(entry.getMappings());
        input.setNamespace(entry.getNamespace());
        String template = Helper.getContext() + "/Resource/" + entry.getVisType() + "/%s";
        input.setResourcePathTemplate(template);
    }
    // getting the whole document, when plugin is using text
    if (visPlugin != null && visPlugin.isUsingText() && result != null && result.getDocumentGraph().getNodes().size() > 0) {
        List<String> nodeAnnoFilter = null;
        if (visPlugin instanceof FilteringVisualizerPlugin) {
            nodeAnnoFilter = ((FilteringVisualizerPlugin) visPlugin).getFilteredNodeAnnotationNames(corpusName, documentName, input.getMappings());
        }
        SaltProject p = getDocument(result.getGraph().getRoots().get(0).getName(), result.getName(), nodeAnnoFilter);
        SDocument wholeDocument = p.getCorpusGraphs().get(0).getDocuments().get(0);
        Helper.addMatchToDocumentGraph(match, wholeDocument);
        input.setDocument(wholeDocument);
    } else {
        input.setDocument(result);
    }
    // getting the raw text, when the visualizer wants to have it
    if (visPlugin != null && visPlugin.isUsingRawText()) {
        input.setRawText(Helper.getRawText(corpusName, documentName));
    }
    return input;
}