Examples with CyWriter org.cytoscape.io.write.CyWriter used on opensource projects

Example 6 with CyWriter

use of org.cytoscape.io.write.CyWriter in project cytoscape-impl by cytoscape.

the class SessionWriterImpl method zipNetworkViews.

/**
 * Writes network view files to the session zip.
 * @throws Exception
 */
private void zipNetworkViews() throws Exception {
    final Set<CyNetworkView> netViews = session.getNetworkViews();
    for (final CyNetworkView view : netViews) {
        if (cancelled)
            return;
        String xgmmlFile = SessionUtil.getXGMMLFilename(view);
        zos.putNextEntry(new ZipEntry(sessionDir + NETWORK_VIEWS_FOLDER + xgmmlFile));
        CyWriter writer = networkViewWriterFactory.createWriter(zos, view);
        writer.run(taskMonitor);
        zos.closeEntry();
        writer = null;
    }
}

Example 7 with CyWriter

use of org.cytoscape.io.write.CyWriter in project cytoscape-impl by cytoscape.

the class SessionWriterImpl method zipVizmap.

/**
 * Writes the vizmap.props file to the session zip.
 */
private void zipVizmap() throws Exception {
    Set<VisualStyle> styles = session.getVisualStyles();
    zos.putNextEntry(new ZipEntry(sessionDir + VIZMAP_FILE));
    CyWriter vizmapWriter = vizmapWriterMgr.getWriter(styles, vizmapFilter, zos);
    vizmapWriter.run(taskMonitor);
    zos.closeEntry();
    vizmapWriter = null;
}

Example 8 with CyWriter

use of org.cytoscape.io.write.CyWriter in project cytoscape-impl by cytoscape.

the class SessionWriterImpl method zipTables.

private void zipTables() throws Exception {
    tableFilenamesBySUID = new HashMap<>();
    Set<CyTableMetadata> tableData = session.getTables();
    for (CyTableMetadata metadata : tableData) {
        if (cancelled)
            return;
        CyTable table = metadata.getTable();
        if (table.getSavePolicy() != SavePolicy.SESSION_FILE)
            continue;
        String tableTitle = SessionUtil.escape(table.getTitle());
        String filename;
        CyNetwork network = metadata.getNetwork();
        if (network == null) {
            filename = String.format("global/%d-%s.cytable", table.getSUID(), tableTitle);
        } else {
            filename = SessionUtil.getNetworkTableFilename(network, metadata);
        }
        tableFilenamesBySUID.put(table.getSUID(), filename);
        zos.putNextEntry(new ZipEntry(sessionDir + TABLES_FOLDER + filename));
        try {
            CyWriter writer = tableWriterMgr.getWriter(table, tableFilter, zos);
            writer.run(taskMonitor);
        } finally {
            zos.closeEntry();
        }
    }
}