Examples with CyCustomGraphics org.cytoscape.view.presentation.customgraphics.CyCustomGraphics used on opensource projects

Example 6 with CyCustomGraphics

use of org.cytoscape.view.presentation.customgraphics.CyCustomGraphics in project cytoscape-impl by cytoscape.

the class RestoreImageTask method restoreSampleImages.

private void restoreSampleImages() throws IOException {
    // Filter by display name
    final Collection<CyCustomGraphics> allGraphics = manager.getAllCustomGraphics();
    final Set<String> names = new HashSet<>();
    for (CyCustomGraphics<?> cg : allGraphics) names.add(cg.getDisplayName());
    for (final URL imageURL : defaultImageURLs) {
        final String[] parts = imageURL.getFile().split("/");
        final String dispNameString = parts[parts.length - 1];
        if (this.manager.getCustomGraphicsBySourceURL(imageURL) == null && !names.contains(dispNameString)) {
            final CyCustomGraphics<?> cg = new URLImageCustomGraphics<>(manager.getNextAvailableID(), imageURL.toString());
            if (cg != null) {
                manager.addCustomGraphics(cg, imageURL);
                cg.setDisplayName(dispNameString);
            }
        }
    }
}

Example 7 with CyCustomGraphics

use of org.cytoscape.view.presentation.customgraphics.CyCustomGraphics in project cytoscape-impl by cytoscape.

the class CustomGraphicsRange method values.

@Override
public Set<CyCustomGraphics> values() {
    Set<CyCustomGraphics> sortedSet = new TreeSet<>(new CGComparator());
    sortedSet.addAll(manager.getAllCustomGraphics());
    return sortedSet;
}

Example 8 with CyCustomGraphics

use of org.cytoscape.view.presentation.customgraphics.CyCustomGraphics in project cytoscape-impl by cytoscape.

the class CustomGraphicsTranslator method translateURL.

private CyCustomGraphics translateURL(String inputValue) {
    try {
        final URL url = new URL(inputValue);
        String mimeType = mimeTypes.get(inputValue);
        if (mimeType == null) {
            URLConnection conn = url.openConnection();
            if (conn == null)
                return null;
            mimeType = conn.getContentType();
            mimeTypes.put(inputValue, mimeType);
        }
        for (CyCustomGraphicsFactory factory : cgMgr.getAllCustomGraphicsFactories()) {
            if (factory.supportsMime(mimeType)) {
                CyCustomGraphics cg = factory.getInstance(url);
                if (cg != null)
                    return cg;
            }
        }
    } catch (MalformedURLException e) {
    } catch (IOException e) {
    }
    return null;
}

Example 9 with CyCustomGraphics

use of org.cytoscape.view.presentation.customgraphics.CyCustomGraphics in project cytoscape-impl by cytoscape.

the class CustomGraphicsManagerImpl method removeCustomGraphics.

@Override
public void removeCustomGraphics(final Long id) {
    final CyCustomGraphics cg = graphicsMap.get(id);
    if (cg != null && cg != NullCustomGraphics.getNullObject()) {
        graphicsMap.remove(id);
        this.isUsedCustomGraphics.remove(cg);
    }
}

Example 10 with CyCustomGraphics

use of org.cytoscape.view.presentation.customgraphics.CyCustomGraphics in project cytoscape-impl by cytoscape.

the class CustomGraphicsManagerImpl method getAllPersistantCustomGraphics.

/* (non-Javadoc)
	 * @see org.cytoscape.ding.customgraphicsmgr.internal.CGM#getAllPersistantCustomGraphics()
	 */
@Override
public Collection<CyCustomGraphics> getAllPersistantCustomGraphics() {
    Set<CyCustomGraphics> cgSet = new HashSet<>();
    for (CyCustomGraphics cg : getAllCustomGraphics()) {
        // Currently, we only export URLImageCustomGraphics to the session file.  This may change in the future...
        if (cg instanceof URLImageCustomGraphics) {
            URLImageCustomGraphics<?> urlCG = (URLImageCustomGraphics<?>) cg;
            // Don't serialize bundle-generated graphics
            if (urlCG.getSourceURL() != null && urlCG.getSourceURL().toString().startsWith("bundle:"))
                continue;
            cgSet.add(cg);
        }
    }
    return cgSet;
}