Examples with ApplicationEntity org.dcm4che3.net.ApplicationEntity used on opensource projects

Example 11 with ApplicationEntity

use of org.dcm4che3.net.ApplicationEntity in project dcm4chee-arc-light by dcm4che.

the class ImportStorageRS method reimportStudy.

@POST
@Path("/studies/{study}/reimport")
public void reimportStudy(@Suspended AsyncResponse ar, @PathParam("study") String studyUID) {
    Output output = selectMediaType();
    ApplicationEntity ae = getApplicationEntity();
    try {
        ArchiveAEExtension arcAE = ae.getAEExtensionNotNull(ArchiveAEExtension.class);
        List<Location> locations = deletionService.reimportStudy(studyUID, HttpServletRequestInfo.valueOf(request), arcAE);
        Attributes coerce = new QueryAttributes(uriInfo, null).getQueryKeys();
        Date now = reasonForModification != null && !coerce.isEmpty() ? new Date() : null;
        Attributes.UpdatePolicy updatePolicy = Attributes.UpdatePolicy.valueOf(this.updatePolicy);
        for (Location location : locations) {
            if (location.getObjectType() == Location.ObjectType.METADATA)
                continue;
            Storage storage = storageFactory.getStorage(getStorageDesc(location.getStorageID()));
            final StoreSession session = service.newStoreSession(HttpServletRequestInfo.valueOf(request), ae, aet, null).withObjectStorageID(location.getStorageID());
            StoreContext ctx = service.newStoreContext(session);
            ctx.getLocations().add(location);
            importInstanceOnStorage(storage, ctx, coerce, updatePolicy, now, location.getStoragePath());
        }
        rsForward.forward(RSOperation.ReimportStudy, arcAE, null, request);
    } catch (StudyNotFoundException e) {
        throw new WebApplicationException(e.getMessage(), Response.Status.NOT_FOUND);
    } catch (StudyNotEmptyException e) {
        throw new WebApplicationException(e.getMessage(), Response.Status.FORBIDDEN);
    } catch (Exception e) {
        throw new WebApplicationException(errResponseAsTextPlain(exceptionAsString(e), Response.Status.INTERNAL_SERVER_ERROR));
    }
    response.setString(Tag.RetrieveURL, VR.UR, retrieveURL());
    Response.ResponseBuilder responseBuilder = Response.status(status());
    ar.resume(responseBuilder.entity(output.entity(response, ae)).header("Warning", response.getString(Tag.ErrorComment)).build());
}

Example 12 with ApplicationEntity

use of org.dcm4che3.net.ApplicationEntity in project dcm4chee-arc-light by dcm4che.

the class StorageRS method getStorageSystems.

private List<StorageSystem> getStorageSystems() {
    if (dicomAETitle != null) {
        ApplicationEntity ae = device.getApplicationEntity(dicomAETitle, true);
        if (ae == null || !ae.isInstalled()) {
            LOG.info("Archive AE {} not provided by Device {}", dicomAETitle, device.getDeviceName());
            return Collections.EMPTY_LIST;
        }
    }
    List<StorageSystem> storageSystems = new ArrayList<>();
    ArchiveDeviceExtension arcdev = device.getDeviceExtensionNotNull(ArchiveDeviceExtension.class);
    arcdev.getStorageDescriptors().forEach(desc -> {
        String storageID = desc.getStorageID();
        Set<String> usages = new HashSet<>();
        Set<String> aets = new HashSet<>();
        if (StringUtils.contains(arcdev.getSeriesMetadataStorageIDs(), storageID))
            usages.add("dcmSeriesMetadataStorageID");
        for (ApplicationEntity ae : device.getApplicationEntities()) {
            ArchiveAEExtension arcAE = ae.getAEExtension(ArchiveAEExtension.class);
            if (arcAE == null) {
                LOG.info("Archive AE Extension not configured for AE : {}", ae.getAETitle());
                continue;
            }
            if (StringUtils.contains(arcAE.getObjectStorageIDs(), desc.getStorageID())) {
                usages.add("dcmObjectStorageID");
                aets.add(ae.getAETitle());
            }
            if (StringUtils.contains(arcAE.getMetadataStorageIDs(), desc.getStorageID())) {
                usages.add("dcmMetadataStorageID");
                aets.add(ae.getAETitle());
            }
        }
        if ((dicomAETitle == null || aets.contains(dicomAETitle)) && (usage == null || usages.contains(usage)) && (storageClusterID == null || storageClusterID.equals(desc.getStorageClusterID())) && (uriScheme == null || desc.getStorageURI().getScheme().equals(uriScheme))) {
            try (Storage storage = storageFactory.getStorage(desc)) {
                long usableSpace = storage.getUsableSpace();
                if (usableSpaceBelow == null || usableSpace < usableSpaceBelow) {
                    long totalSpace = storage.getTotalSpace();
                    storageSystems.add(new StorageSystem(desc, usableSpace, totalSpace, usages, aets));
                }
            } catch (IOException e) {
                LOG.warn("Failed to access {}", desc, e);
            }
        }
    });
    storageSystems.sort(Comparator.comparing(storageSystem -> storageSystem.desc.getStorageID()));
    return storageSystems;
}

Example 13 with ApplicationEntity

use of org.dcm4che3.net.ApplicationEntity in project dcm4chee-arc-light by dcm4che.

the class StowRS method store.

private void store(AsyncResponse ar, InputStream in, final Input input, OutputType output) throws Exception {
    ApplicationEntity ae = getApplicationEntity();
    if (aet.equals(ae.getAETitle()))
        validateWebApp();
    ar.register((CompletionCallback) throwable -> purgeSpoolDirectory());
    final StoreSession session = service.newStoreSession(HttpServletRequestInfo.valueOf(request), ae, aet, null);
    new MultipartParser(boundary()).parse(new BufferedInputStream(in), (partNumber, multipartInputStream) -> {
        Map<String, List<String>> headerParams = multipartInputStream.readHeaderParams();
        LOG.info("storeInstances: Extract Part #{}{}", partNumber, headerParams);
        String contentLocation = getHeaderParamValue(headerParams, "content-location");
        String contentType = getHeaderParamValue(headerParams, "content-type");
        MediaType mediaType = normalize(MediaType.valueOf(contentType));
        try {
            if (!input.readBodyPart(StowRS.this, session, multipartInputStream, mediaType, contentLocation)) {
                LOG.info("{}: Ignore Part with Content-Type={}", session, mediaType);
                multipartInputStream.skipAll();
            }
        } catch (JsonParsingException e) {
            throw new WebApplicationException(errResponse(e.getMessage() + " at location : " + e.getLocation(), Response.Status.BAD_REQUEST));
        } catch (Exception e) {
            if (instances.size() == 1)
                throw new WebApplicationException(errResponseAsTextPlain(exceptionAsString(e), Response.Status.INTERNAL_SERVER_ERROR));
            else {
                LOG.warn("Failed to process Part #" + partNumber + headerParams);
                throw new WebApplicationException(errResponseAsTextPlain(exceptionAsString(e), Response.Status.INTERNAL_SERVER_ERROR));
            }
        }
    });
    int instanceNumber = 0;
    for (Attributes instance : instances) storeDicomObject(session, instance, ++instanceNumber);
    response.setString(Tag.RetrieveURL, VR.UR, retrieveURL());
    Response.ResponseBuilder responseBuilder = Response.status(status());
    ar.resume(responseBuilder.entity(output.entity(response, ae)).header("Warning", warning).build());
}

Example 14 with ApplicationEntity

use of org.dcm4che3.net.ApplicationEntity in project dcm4chee-arc-light by dcm4che.

the class ArchiveDeviceConfigurationTest method testPersist.

@Test
public void testPersist() throws Exception {
    ArchiveDeviceFactory.ConfigType configType = ArchiveDeviceFactory.ConfigType.valueOf(System.getProperty("configType", ArchiveDeviceFactory.ConfigType.DEFAULT.name()));
    Device arrDevice = ArchiveDeviceFactory.createARRDevice(configType);
    Device[] otherDevices = new Device[ArchiveDeviceFactory.OTHER_DEVICES.length];
    EnumSet<DicomConfiguration.Option> register = EnumSet.of(DicomConfiguration.Option.REGISTER);
    config.persist(arrDevice, register);
    config.persist(otherDevices[0] = ArchiveDeviceFactory.createOtherDevice(0), register);
    config.persist(ArchiveDeviceFactory.createStoreSCPDevice(), register);
    config.persist(ArchiveDeviceFactory.createStowRSDevice(), register);
    if (configType == ArchiveDeviceFactory.ConfigType.SAMPLE) {
        for (int i = 1; i < ArchiveDeviceFactory.OTHER_DEVICES.length; i++) {
            config.persist(otherDevices[i] = ArchiveDeviceFactory.createOtherDevice(i), register);
        }
        config.persist(ArchiveDeviceFactory.qualifyDevice(ArchiveDeviceFactory.createHL7Device("hl7rcv", ArchiveDeviceFactory.PIX_MANAGER, "localhost", 2576, 12576), "DSS", ArchiveDeviceFactory.SITE_A, ArchiveDeviceFactory.INST_A), register);
    }
    Device arc = ArchiveDeviceFactory.createArchiveDevice("dcm4chee-arc", configType, arrDevice, otherDevices[ArchiveDeviceFactory.SCHEDULED_STATION_INDEX], otherDevices[ArchiveDeviceFactory.STORESCU_INDEX], otherDevices[ArchiveDeviceFactory.MPPSSCU_INDEX]);
    config.persist(arc, register);
    Device keycloak = ArchiveDeviceFactory.createKeycloakDevice("keycloak", arrDevice, configType);
    config.persist(keycloak, null);
    ApplicationEntity ae = config.findApplicationEntity("DCM4CHEE");
    assertNotNull(ae);
    assertDeviceEquals(arc, ae.getDevice());
}

Example 15 with ApplicationEntity

use of org.dcm4che3.net.ApplicationEntity in project dcm4chee-arc-light by dcm4che.

the class QueryAETs method writeTo.

private void writeTo(ApplicationEntity ae, JsonGenerator gen) {
    ArchiveAEExtension arcAE = ae.getAEExtension(ArchiveAEExtension.class);
    JsonWriter writer = new JsonWriter(gen);
    gen.writeStartObject();
    gen.write("dicomAETitle", ae.getAETitle());
    writer.writeNotNullOrDef("dicomDescription", ae.getDescription(), null);
    writer.writeNotEmpty("dcmOtherAETitle", ae.getOtherAETitles());
    if (arcAE != null) {
        QueryRetrieveView queryRetrieveView = arcAE.getQueryRetrieveView();
        writer.writeNotDef("dcmHideNotRejectedInstances", queryRetrieveView != null && queryRetrieveView.isHideNotRejectedInstances(), false);
        writer.writeNotNullOrDef("dcmAllowDeletePatient", arcAE.allowDeletePatient(), null);
        writer.writeNotNullOrDef("dcmAllowDeleteStudyPermanently", arcAE.allowDeleteStudy(), null);
    }
    gen.writeEnd();
}