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Example 56 with Instance

use of org.dkpro.tc.api.features.Instance in project dkpro-tc by dkpro.

the class WekaDataWriter method writeGenericFormat.

@Override
public void writeGenericFormat(Collection<Instance> instances) throws AnalysisEngineProcessException {
    try {
        initGeneric();
        bw.write(gson.toJson(instances.toArray(new Instance[0])) + "\n");
        bw.close();
        bw = null;
    } catch (Exception e) {
        throw new AnalysisEngineProcessException(e);
    }
}
Also used : DenseInstance(weka.core.DenseInstance) SparseInstance(weka.core.SparseInstance) Instance(org.dkpro.tc.api.features.Instance) AnalysisEngineProcessException(org.apache.uima.analysis_engine.AnalysisEngineProcessException) IOException(java.io.IOException) TextClassificationException(org.dkpro.tc.api.exception.TextClassificationException) AnalysisEngineProcessException(org.apache.uima.analysis_engine.AnalysisEngineProcessException)

Example 57 with Instance

use of org.dkpro.tc.api.features.Instance in project dkpro-tc by dkpro.

the class WekaFeatureEncoder method getAttributeStore.

public static AttributeStore getAttributeStore(Collection<Instance> instances) throws TextClassificationException {
    AttributeStore attributeStore = new AttributeStore();
    for (Instance instance : instances) {
        for (Feature feature : instance.getFeatures()) {
            if (!attributeStore.containsAttributeName(feature.getName())) {
                Attribute attribute = featureToAttribute(feature);
                attributeStore.addAttribute(feature.getName(), attribute);
            }
        }
    }
    return attributeStore;
}
Also used : AttributeStore(org.dkpro.tc.ml.weka.util.AttributeStore) Instance(org.dkpro.tc.api.features.Instance) Attribute(weka.core.Attribute) Feature(org.dkpro.tc.api.features.Feature)

Example 58 with Instance

use of org.dkpro.tc.api.features.Instance in project dkpro-tc by dkpro.

the class WekaUtilTest method tcInstanceToMekaInstanceTest.

@Test
public void tcInstanceToMekaInstanceTest() throws Exception {
    List<String> outcomeValues = Arrays.asList(new String[] { "outc_1", "outc_2", "outc_3" });
    Instance i1 = new Instance();
    i1.addFeature(new Feature("feature1", 2, FeatureType.NUMERIC));
    i1.addFeature(new Feature("feature2", 2, FeatureType.NUMERIC));
    i1.addFeature(new Feature("feature3_{{", "a", FeatureType.STRING));
    Instance i2 = new Instance();
    i2.addFeature(new Feature("feature1", 1, FeatureType.NUMERIC));
    i2.addFeature(new Feature("feature4", "val_1", FeatureType.STRING));
    i2.addFeature(new Feature("feature3_{{", "b", FeatureType.STRING));
    ArrayList<Attribute> attributes = new ArrayList<Attribute>();
    attributes.add(new Attribute("outc_1", Arrays.asList(new String[] { "0", "1" })));
    attributes.add(new Attribute("outc_2", Arrays.asList(new String[] { "0", "1" })));
    attributes.add(new Attribute("outc_3", Arrays.asList(new String[] { "0", "1" })));
    attributes.add(new Attribute("feature5"));
    attributes.add(new Attribute("feature2"));
    attributes.add(new Attribute("feature4", Arrays.asList(new String[] { "val_1", "val_2" })));
    attributes.add(new Attribute("feature1"));
    Instances trainingData = new Instances("test", attributes, 0);
    weka.core.Instance wekaInstance1 = WekaUtils.tcInstanceToMekaInstance(i1, trainingData, outcomeValues);
    weka.core.Instance wekaInstance2 = WekaUtils.tcInstanceToMekaInstance(i2, trainingData, outcomeValues);
    assertEquals(true, wekaInstance1.equalHeaders(wekaInstance2));
    assertEquals(7, wekaInstance1.numAttributes());
    wekaInstance1.dataset().add(wekaInstance1);
    wekaInstance2.dataset().add(wekaInstance2);
    System.out.println(wekaInstance1.dataset() + "\n");
    System.out.println(wekaInstance2.dataset() + "\n");
}
Also used : Instances(weka.core.Instances) Instance(org.dkpro.tc.api.features.Instance) Attribute(weka.core.Attribute) ArrayList(java.util.ArrayList) Feature(org.dkpro.tc.api.features.Feature) Test(org.junit.Test)

Example 59 with Instance

use of org.dkpro.tc.api.features.Instance in project dkpro-tc by dkpro.

the class WekaUtilTest method tcInstanceToWekaInstanceRegressionTest.

@Test
public void tcInstanceToWekaInstanceRegressionTest() throws Exception {
    Instance i1 = new Instance();
    i1.addFeature(new Feature("feature1", 2, FeatureType.NUMERIC));
    i1.addFeature(new Feature("feature2", 2, FeatureType.NUMERIC));
    i1.addFeature(new Feature("feature3_{{", "a", FeatureType.STRING));
    Instance i2 = new Instance();
    i2.addFeature(new Feature("feature1", 1, FeatureType.NUMERIC));
    i2.addFeature(new Feature("feature4", "val_1", FeatureType.STRING));
    i2.addFeature(new Feature("feature3_{{", "b", FeatureType.STRING));
    ArrayList<Attribute> attributes = new ArrayList<Attribute>();
    attributes.add(new Attribute("feature5"));
    attributes.add(new Attribute("feature2"));
    attributes.add(new Attribute("feature4", Arrays.asList(new String[] { "val_1", "val_2" })));
    attributes.add(new Attribute("feature1"));
    attributes.add(new Attribute("outcome"));
    Instances trainingData = new Instances("test", attributes, 0);
    weka.core.Instance wekaInstance1 = WekaUtils.tcInstanceToWekaInstance(i1, trainingData, null, true);
    weka.core.Instance wekaInstance2 = WekaUtils.tcInstanceToWekaInstance(i2, trainingData, null, true);
    assertEquals(true, wekaInstance1.equalHeaders(wekaInstance2));
    assertEquals(5, wekaInstance1.numAttributes());
    wekaInstance1.dataset().add(wekaInstance1);
    wekaInstance2.dataset().add(wekaInstance2);
    System.out.println(wekaInstance1.dataset() + "\n");
    System.out.println(wekaInstance2.dataset() + "\n");
}
Also used : Instances(weka.core.Instances) Instance(org.dkpro.tc.api.features.Instance) Attribute(weka.core.Attribute) ArrayList(java.util.ArrayList) Feature(org.dkpro.tc.api.features.Feature) Test(org.junit.Test)

Example 60 with Instance

use of org.dkpro.tc.api.features.Instance in project dkpro-tc by dkpro.

the class WekaUtilTest method instanceToArffTest_multiLabel.

@Test
public void instanceToArffTest_multiLabel() throws Exception {
    Instance i1 = new Instance();
    i1.addFeature(new Feature("feature1", 2, FeatureType.NUMERIC));
    i1.addFeature(new Feature("feature2", 2, FeatureType.NUMERIC));
    i1.addFeature(new Feature("feature3_{{", "a", FeatureType.STRING));
    i1.addFeature(new Feature("feature4", Values.VALUE_1, FeatureType.NUMERIC));
    i1.setOutcomes("1", "2");
    Instance i2 = new Instance();
    i2.addFeature(new Feature("feature1", 1, FeatureType.NUMERIC));
    i2.addFeature(new Feature("feature2", 1, FeatureType.NUMERIC));
    i2.addFeature(new Feature("feature3_{{", "b", FeatureType.STRING));
    i2.addFeature(new Feature("feature4", Values.VALUE_2, FeatureType.NUMERIC));
    i2.setOutcomes("2", "3");
    Instance i3 = new Instance();
    i3.addFeature(new Feature("feature1", 1, FeatureType.NUMERIC));
    i3.addFeature(new Feature("feature2", 1, FeatureType.NUMERIC));
    i3.addFeature(new Feature("feature3_{{", "b", FeatureType.STRING));
    i3.addFeature(new Feature("feature4", Values.VALUE_3, FeatureType.NUMERIC));
    i3.setOutcomes("2");
    List<Instance> instances = new ArrayList<>();
    instances.add(i1);
    instances.add(i2);
    instances.add(i3);
    File outfile = new File("target/test/out.txt");
    outfile.mkdirs();
    outfile.createNewFile();
    outfile.deleteOnExit();
    WekaUtils.instanceListToArffFileMultiLabel(outfile, instances, false);
    System.out.println(FileUtils.readFileToString(outfile, "utf-8"));
}
Also used : Instance(org.dkpro.tc.api.features.Instance) ArrayList(java.util.ArrayList) Feature(org.dkpro.tc.api.features.Feature) File(java.io.File) Test(org.junit.Test)

Aggregations

Instance (org.dkpro.tc.api.features.Instance)61 ArrayList (java.util.ArrayList)38 Feature (org.dkpro.tc.api.features.Feature)30 Test (org.junit.Test)27 File (java.io.File)17 AnalysisEngineProcessException (org.apache.uima.analysis_engine.AnalysisEngineProcessException)14 IOException (java.io.IOException)12 Gson (com.google.gson.Gson)8 TextClassificationException (org.dkpro.tc.api.exception.TextClassificationException)8 Attribute (weka.core.Attribute)8 DenseInstance (weka.core.DenseInstance)8 Instances (weka.core.Instances)8 SparseInstance (weka.core.SparseInstance)8 FeatureExtractorResource_ImplBase (org.dkpro.tc.api.features.FeatureExtractorResource_ImplBase)6 BufferedReader (java.io.BufferedReader)5 FileInputStream (java.io.FileInputStream)5 InputStreamReader (java.io.InputStreamReader)5 AnalysisEngineDescription (org.apache.uima.analysis_engine.AnalysisEngineDescription)5 CollectionReaderDescription (org.apache.uima.collection.CollectionReaderDescription)5 ExternalResourceDescription (org.apache.uima.resource.ExternalResourceDescription)5