Examples with Concept org.edamontology.edammap.core.edam.Concept used on opensource projects

Example 6 with Concept

use of org.edamontology.edammap.core.edam.Concept in project edammap by edamontology.

the class Report method writeMatches.

private static void writeMatches(ScoreArgs scoreArgs, Writer writer, Map<EdamUri, Concept> concepts, Query query, List<Publication> publications, MappingTest mapping) throws IOException {
    for (Branch branch : Branch.values()) {
        List<MatchTest> matches = mapping.getMatches(branch);
        if (matches.isEmpty())
            continue;
        writer.write("\t\t<div class=\"branch " + branch + "\">\n");
        writer.write("\t\t\t<h3>" + branch + "</h3>\n");
        for (MatchTest matchTest : matches) {
            Match match = matchTest.getMatch();
            writer.write("\t\t\t<div class=\"match " + matchTest.getTest().name() + "\">\n");
            writer.write("\t\t\t\t<div class=\"match-div\">\n");
            writeConcept(writer, concepts, match);
            writeQueryMatch(writer, query, publications, match.getQueryMatch(), true);
            writer.write("\t\t\t\t\t<div class=\"type\">" + match.getConceptMatch().getType() + "</div>\n");
            writeScore(scoreArgs, writer, branch, match);
            writer.write("\t\t\t\t</div>\n");
            List<MatchAverageStats> matchAverageStats = match.getMatchAverageStats();
            if (matchAverageStats != null && !matchAverageStats.isEmpty()) {
                // TODO
                Concept concept = concepts.get(match.getEdamUri());
                writer.write("\t\t\t\t<div class=\"details-div\">\n");
                writer.write("\t\t\t\t\t<div class=\"details\" tabindex=\"0\"></div>\n");
                writer.write("\t\t\t\t\t<div class=\"details-box\" tabindex=\"0\">\n");
                for (MatchAverageStats mas : matchAverageStats) {
                    writer.write("\t\t\t\t\t\t<div><div>");
                    writeQueryMatch(writer, query, publications, mas.getQueryMatch(), false);
                    writer.write("<br>" + percent(mas.getQueryMatch().getScore()) + "</div><div>");
                    ConceptMatchType conceptType = mas.getConceptMatch().getType();
                    writer.write("<span>" + conceptType + "</span>");
                    if (conceptType != ConceptMatchType.definition && conceptType != ConceptMatchType.comment && conceptType != ConceptMatchType.none) {
                        writer.write("<br>" + conceptMatchString(concept, mas.getConceptMatch()));
                    }
                    writer.write("<br>" + percent(mas.getConceptMatch().getScore()) + "</div><div>");
                    writer.write("<span>" + percent(mas.getScore()) + "</span></div></div>\n");
                }
                writer.write("\t\t\t\t\t</div>\n");
                writer.write("\t\t\t\t</div>\n");
            }
            writer.write("\t\t\t</div>\n");
        }
        writer.write("\t\t</div>\n");
    }
}