Examples with GraphServiceFactoryProxy org.eol.globi.db.GraphServiceFactoryProxy used on opensource projects

Example 16 with GraphServiceFactoryProxy

use of org.eol.globi.db.GraphServiceFactoryProxy in project eol-globi-data by jhpoelen.

the class LinkerTaxonIndexTest method linking.

@Test
public void linking() throws NodeFactoryException {
    Taxon taxonFound = new TaxonImpl("Homo sapiens", "Bar:123");
    taxonFound.setPath("Animalia | Mammalia | Homo sapiens");
    Taxon taxon = taxonIndex.getOrCreateTaxon(taxonFound);
    TaxonImpl taxon1 = new TaxonImpl("Homo sapiens also", "FOO:444");
    taxon1.setPathIds("BARZ:111 | FOOZ:777");
    TaxonImpl taxon2 = new TaxonImpl("Homo sapiens also2", "FOO:444");
    taxon1.setPathIds("BARZ:111 | FOOZ:777");
    NodeUtil.connectTaxa(taxon1, (TaxonNode) taxon, getGraphDb(), RelTypes.SAME_AS);
    NodeUtil.connectTaxa(taxon2, (TaxonNode) taxon, getGraphDb(), RelTypes.SAME_AS);
    taxon = taxonIndex.getOrCreateTaxon(new TaxonImpl("Bla blaus", null));
    taxon.setExternalId("FOO 1234");
    resolveNames();
    new LinkerTaxonIndex(new GraphServiceFactoryProxy(getGraphDb())).index();
    IndexHits<Node> hits = getGraphDb().index().forNodes(LinkerTaxonIndex.INDEX_TAXON_NAMES_AND_IDS).query("*:*");
    Node next = hits.next();
    assertThat(new TaxonNode(next).getName(), is("Homo sapiens"));
    assertThat(hits.hasNext(), is(true));
    hits.close();
    assertSingleHit(PropertyAndValueDictionary.PATH + ":BAR\\:123");
    assertSingleHit(PropertyAndValueDictionary.PATH + ":FOO\\:444");
    assertSingleHit(PropertyAndValueDictionary.PATH + ":FOO\\:444 " + PropertyAndValueDictionary.PATH + ":BAR\\:123");
    assertSingleHit(PropertyAndValueDictionary.PATH + ":BAR\\:*");
    assertSingleHit(PropertyAndValueDictionary.PATH + ":Homo");
    assertSingleHit(PropertyAndValueDictionary.PATH + ":\"Homo sapiens\"");
    Taxon node = taxonIndex.findTaxonByName("Homo sapiens");
    assertThat(((NodeBacked) node).getUnderlyingNode().getProperty(PropertyAndValueDictionary.EXTERNAL_IDS).toString(), is("Animalia | BARZ:111 | Bar:123 | FOO:444 | FOOZ:777 | Homo sapiens | Homo sapiens also | Homo sapiens also2 | Mammalia"));
    assertThat(((NodeBacked) node).getUnderlyingNode().getProperty(PropertyAndValueDictionary.NAME_IDS).toString(), is("Bar:123 | FOO:444"));
    assertThat(new TaxonFuzzySearchIndex(getGraphDb()).query("name:sapienz~").size(), is(1));
    assertThat(new TaxonFuzzySearchIndex(getGraphDb()).query("name:sapienz").size(), is(0));
}