Examples with LocationImpl org.eol.globi.domain.LocationImpl used on opensource projects

Example 36 with LocationImpl

use of org.eol.globi.domain.LocationImpl in project eol-globi-data by jhpoelen.

the class StudyImporterForINaturalist method parseLocation.

private Location parseLocation(JsonNode observation) throws NodeFactoryException {
    Location location = null;
    String latitudeString = observation.get("latitude").getTextValue();
    String longitudeString = observation.get("longitude").getTextValue();
    if (latitudeString != null && longitudeString != null) {
        double latitude = Double.parseDouble(latitudeString);
        double longitude = Double.parseDouble(longitudeString);
        location = nodeFactory.getOrCreateLocation(new LocationImpl(latitude, longitude, null, null));
    }
    return location;
}

Example 37 with LocationImpl

use of org.eol.globi.domain.LocationImpl in project eol-globi-data by jhpoelen.

the class ExporterAssociationsTest method createTestData.

private void createTestData(Double length) throws NodeFactoryException, ParseException {
    Study myStudy = nodeFactory.getOrCreateStudy(new StudyImpl("myStudy", "data\tsource description", null, ExternalIdUtil.toCitation("contributor", "description", "pubYear")));
    Specimen specimen = nodeFactory.createSpecimen(myStudy, new TaxonImpl("Homo sapiens", "EOL:123"));
    specimen.setStomachVolumeInMilliLiter(666.0);
    specimen.setLifeStage(new TermImpl("GLOBI:JUVENILE", "JUVENILE"));
    specimen.setPhysiologicalState(new TermImpl("GLOBI:DIGESTATE", "DIGESTATE"));
    specimen.setBodyPart(new TermImpl("GLOBI:BONE", "BONE"));
    nodeFactory.setUnixEpochProperty(specimen, new Date(ExportTestUtil.utcTestTime()));
    eats(specimen, "Canis lupus", "EOL:456", myStudy);
    eats(specimen, "Felis whateverus", PropertyAndValueDictionary.NO_MATCH, myStudy);
    if (null != length) {
        specimen.setLengthInMm(length);
    }
    Location location = nodeFactory.getOrCreateLocation(new LocationImpl(13.0, 45.9, -60.0, null));
    specimen.caughtIn(location);
}

Example 38 with LocationImpl

use of org.eol.globi.domain.LocationImpl in project eol-globi-data by jhpoelen.

the class ExportFlatInteractionsTest method specimenEatCatAndDog.

private void specimenEatCatAndDog(Double length, Study myStudy, String scientificName, String externalId) throws NodeFactoryException {
    Specimen specimen = collectSpecimen(myStudy, scientificName, externalId);
    eatPrey(specimen, "Canis lupus", "EOL:555", myStudy);
    eatPrey(specimen, "Felis domesticus", "EOL:666", myStudy);
    eatPrey(specimen, "Blah blahuuuu", PropertyAndValueDictionary.NO_MATCH, myStudy);
    if (null != length) {
        specimen.setLengthInMm(length);
    }
    LocationImpl location1 = new LocationImpl(12.0, -45.9, -60.0, null);
    location1.setLocality("some locale");
    location1.setLocalityId("some:localeid");
    Location location = factory.getOrCreateLocation(location1);
    specimen.caughtIn(location);
}

Example 39 with LocationImpl

use of org.eol.globi.domain.LocationImpl in project eol-globi-data by jhpoelen.

the class ExporterMeasurementOrFactTest method createTestData.

private void createTestData(Double length, String targetTaxonName, String sourceTaxonName) throws NodeFactoryException, ParseException {
    Study myStudy = nodeFactory.createStudy(new StudyImpl("myStudy", null, null, null));
    Specimen specimen = nodeFactory.createSpecimen(myStudy, new TaxonImpl(sourceTaxonName, "externalId1"));
    specimen.setStomachVolumeInMilliLiter(666.0);
    specimen.setLifeStage(new TermImpl("GLOBI:JUVENILE", "JUVENILE"));
    specimen.setPhysiologicalState(new TermImpl("GLOBI:DIGESTATE", "DIGESTATE"));
    specimen.setBodyPart(new TermImpl("GLOBI:BONE", "BONE"));
    nodeFactory.setUnixEpochProperty(specimen, ExportTestUtil.utcTestDate());
    Specimen otherSpecimen = nodeFactory.createSpecimen(myStudy, new TaxonImpl(targetTaxonName, "externalId2"));
    otherSpecimen.setVolumeInMilliLiter(124.0);
    specimen.ate(otherSpecimen);
    otherSpecimen = nodeFactory.createSpecimen(myStudy, new TaxonImpl(targetTaxonName, "externalId2"));
    otherSpecimen.setVolumeInMilliLiter(18.0);
    specimen.ate(otherSpecimen);
    if (null != length) {
        specimen.setLengthInMm(length);
    }
    Location location = nodeFactory.getOrCreateLocation(new LocationImpl(22.0, 129.9, -60.0, null));
    specimen.caughtIn(location);
    resolveNames();
}

Example 40 with LocationImpl

use of org.eol.globi.domain.LocationImpl in project eol-globi-data by jhpoelen.

the class ExporterOccurrenceAggregatesTest method specimenEatCatAndDog.

private void specimenEatCatAndDog(Double length, Study myStudy, String scientificName, String externalId) throws NodeFactoryException {
    Specimen specimen = collectSpecimen(myStudy, scientificName, externalId);
    eatPrey(specimen, "Canis lupus", "EOL:555", myStudy);
    eatPrey(specimen, "Felis domesticus", "EOL:666", myStudy);
    eatPrey(specimen, "Blah blahuuuu", PropertyAndValueDictionary.NO_MATCH, myStudy);
    if (null != length) {
        specimen.setLengthInMm(length);
    }
    Location location = nodeFactory.getOrCreateLocation(new LocationImpl(12.0, -45.9, -60.0, null));
    specimen.caughtIn(location);
}