Examples with TaxonImage org.eol.globi.domain.TaxonImage used on opensource projects

Example 6 with TaxonImage

use of org.eol.globi.domain.TaxonImage in project eol-globi-data by jhpoelen.

the class TaxonUtilTest method toTaxonImageNonEOL.

@Test
public void toTaxonImageNonEOL() {
    TaxonImage image = new TaxonImage();
    Taxon taxon = new TaxonImpl("Donald duckus", "ZZZ:123");
    taxon.setCommonNames("bla @en | boo @de");
    taxon.setPath("one | two | three");
    Map<String, String> taxonMap = new TreeMap<String, String>(TaxonUtil.taxonToMap(taxon));
    taxonMap.put(PropertyAndValueDictionary.THUMBNAIL_URL, "http://foo/bar/thumb");
    taxonMap.put(PropertyAndValueDictionary.EXTERNAL_URL, "http://foo/bar");
    TaxonImage enrichedImage = TaxonUtil.enrichTaxonImageWithTaxon(taxonMap, image);
    assertThat(enrichedImage.getCommonName(), is("bla"));
    assertThat(enrichedImage.getTaxonPath(), is("one | two | three"));
    assertThat(enrichedImage.getInfoURL(), is("http://foo/bar"));
    assertThat(enrichedImage.getThumbnailURL(), is("http://foo/bar/thumb"));
    assertThat(enrichedImage.getPageId(), is(nullValue()));
    assertThat(enrichedImage.getImageURL(), is(nullValue()));
}

Example 7 with TaxonImage

use of org.eol.globi.domain.TaxonImage in project eol-globi-data by jhpoelen.

the class EOLTaxonImageService method lookupImage.

private TaxonImage lookupImage(String externalId) throws PropertyEnricherException {
    TaxonImage image;
    Map<String, String> enrich = new EOLService().enrich(TaxonUtil.taxonToMap(new TaxonImpl(null, externalId)));
    Taxon taxon = TaxonUtil.mapToTaxon(enrich);
    image = taxonToTaxonImage(taxon);
    return image;
}

Example 8 with TaxonImage

use of org.eol.globi.domain.TaxonImage in project eol-globi-data by jhpoelen.

the class ImageLinker method link.

@Override
public void link() {
    ExecutionEngine engine = new ExecutionEngine(graphDb);
    ExecutionResult executionResult = engine.execute("START taxon = node:taxons('*:*')\n" + "WHERE not(has(taxon.thumbnailUrl)) AND has(taxon.externalId) AND taxon.externalId <> 'no:match'\n" + "RETURN id(taxon) as `id`, taxon.externalId as `externalId`");
    for (Map<String, Object> externalIdMap : executionResult) {
        final String externalId = (String) externalIdMap.get("externalId");
        final Long nodeId = (Long) externalIdMap.get("id");
        TaxonImage taxonImage = null;
        try {
            taxonImage = new EOLTaxonImageService().lookupImageForExternalId(externalId);
        } catch (IOException e) {
            LOG.warn("failed to lookup externalId [" + externalId + "]", e);
        }
        if (taxonImage == null) {
            if (out != null) {
                out.println(StringUtils.join(Arrays.asList("EOL:12345", "", "", ""), "\t"));
            }
        } else {
            final String infoURL = taxonImage.getInfoURL() == null ? "" : taxonImage.getInfoURL();
            final String thumbnailURL = taxonImage.getThumbnailURL() == null ? "" : taxonImage.getThumbnailURL();
            final String imageURL = taxonImage.getImageURL() == null ? "" : taxonImage.getImageURL();
            ExecutionResult execute = engine.execute("START taxon = node({nodeId})\n" + "SET taxon.externalUrl={infoUrl}, taxon.imageUrl={imageUrl}, taxon.thumbnailUrl={thumbnailUrl}\n" + "RETURN taxon.externalId, taxon.externalUrl, taxon.thumbnailUrl, taxon.imageUrl", new HashMap<String, Object>() {

                {
                    put("nodeId", nodeId);
                    put("infoUrl", infoURL);
                    put("imageUrl", imageURL);
                    put("thumbnailUrl", thumbnailURL);
                }
            });
            if (out != null) {
                for (Map<String, Object> stringObjectMap : execute) {
                    out.println(StringUtils.join(CSVTSVUtil.escapeValues(stringObjectMap.values()), "\t"));
                }
            }
            if (execute != null && execute.iterator() != null) {
                execute.iterator().close();
            }
        }
    }
}

Example 9 with TaxonImage

use of org.eol.globi.domain.TaxonImage in project eol-globi-data by jhpoelen.

the class EOLTaxonImageService method taxonToTaxonImage.

private static TaxonImage taxonToTaxonImage(Taxon taxon) {
    TaxonImage image = new TaxonImage();
    if (StringUtils.isNotBlank(taxon.getCommonNames())) {
        String[] names = StringUtils.split(taxon.getCommonNames(), CharsetConstant.SEPARATOR_CHAR);
        for (String name : names) {
            String[] nameParts = StringUtils.split(name, CharsetConstant.LANG_SEPARATOR_CHAR);
            if (nameParts.length > 1) {
                String vernacularName = StringUtils.trim(nameParts[0]);
                String language = StringUtils.trim(nameParts[1]);
                if ("en".equals(language)) {
                    String commonName = vernacularName.replaceAll("\\(.*\\)", "");
                    String capitalize = WordUtils.capitalize(commonName);
                    image.setCommonName(capitalize.replaceAll("\\sAnd\\s", " and "));
                    break;
                }
            }
        }
    }
    image.setThumbnailURL(taxon.getThumbnailUrl());
    image.setImageURL(taxon.getThumbnailUrl());
    image.setInfoURL(taxon.getExternalUrl());
    image.setScientificName(taxon.getName());
    image.setTaxonPath(taxon.getPath());
    if (StringUtils.startsWith(taxon.getExternalId(), TaxonomyProvider.ID_PREFIX_EOL)) {
        image.setPageId(StringUtils.replace(taxon.getExternalId(), TaxonomyProvider.ID_PREFIX_EOL, ""));
    }
    return image;
}

Example 10 with TaxonImage

use of org.eol.globi.domain.TaxonImage in project eol-globi-data by jhpoelen.

the class ImageService method findTaxonImagesForTaxonWithName.

@RequestMapping(value = "/imagesForName/{scientificName}", method = RequestMethod.GET, produces = "application/json;charset=UTF-8")
@ResponseBody
public TaxonImage findTaxonImagesForTaxonWithName(@PathVariable("scientificName") String scientificName) throws IOException {
    TaxonImage taxonImage = new TaxonImage();
    if (TaxonUtil.isEmptyValue(scientificName)) {
        taxonImage.setScientificName(scientificName);
    } else {
        Map<String, String> taxonWithImage = taxonSearch.findTaxonWithImage(scientificName);
        if (taxonWithImage == null || taxonWithImage.isEmpty()) {
            Map<String, String> taxon = taxonSearch.findTaxon(scientificName, null);
            if (taxon != null) {
                if (taxon.containsKey(PropertyAndValueDictionary.EXTERNAL_ID)) {
                    taxonImage = imageSearch.lookupImageForExternalId(taxon.get(PropertyAndValueDictionary.EXTERNAL_ID));
                    if (taxonImage == null) {
                        taxonImage = new TaxonImage();
                    }
                    TaxonUtil.enrichTaxonImageWithTaxon(taxon, taxonImage);
                }
            }
        } else {
            taxonImage = TaxonUtil.enrichTaxonImageWithTaxon(taxonWithImage, new TaxonImage());
        }
    }
    if (taxonImage == null) {
        throw new ResourceNotFoundException("no image for [" + scientificName + "]");
    }
    return taxonImage;
}