Examples with TaxonImpl org.eol.globi.domain.TaxonImpl used on opensource projects

Example 91 with TaxonImpl

use of org.eol.globi.domain.TaxonImpl in project eol-globi-data by jhpoelen.

the class StudyImporterForICES method atePrey.

private Specimen atePrey(Specimen predatorSpecimen, String preyName, Study study) throws NodeFactoryException {
    Specimen preySpecimen = nodeFactory.createSpecimen(study, new TaxonImpl(preyName, null));
    predatorSpecimen.ate(preySpecimen);
    return preySpecimen;
}

Example 92 with TaxonImpl

use of org.eol.globi.domain.TaxonImpl in project eol-globi-data by jhpoelen.

the class TaxonUtilTest method homonymBacteria.

@Test
public void homonymBacteria() {
    TaxonImpl taxon = new TaxonImpl();
    taxon.setName("Bacteria");
    taxon.setExternalId("some:id");
    taxon.setPath(" | Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Protostomia | Ecdysozoa | Panarthropoda | Arthropoda | Mandibulata | Pancrustacea | Hexapoda | Insecta | Dicondylia | Pterygota | Neoptera | Orthopteroidea | Phasmatodea | Verophasmatodea | Anareolatae | Diapheromeridae | Diapheromerinae | Diapheromerini | Bacteria");
    taxon.setPathNames(" | superkingdom |  | kingdom |  |  |  |  |  | phylum |  |  | superclass | class |  |  | subclass | infraclass | order | suborder | infraorder | family | subfamily | tribe | genus");
    TaxonImpl otherTaxon = new TaxonImpl();
    otherTaxon.setName("Bacteria");
    otherTaxon.setExternalId("some:otherid");
    otherTaxon.setPath("Bacteria");
    otherTaxon.setPathNames("kingdom");
    assertThat(TaxonUtil.likelyHomonym(taxon, otherTaxon), is(true));
}

Example 93 with TaxonImpl

use of org.eol.globi.domain.TaxonImpl in project eol-globi-data by jhpoelen.

the class TaxonUtilTest method notHomonymSparseHigherOrderRanks.

@Test
public // see https://github.com/jhpoelen/eol-globi-data/issues/249
void notHomonymSparseHigherOrderRanks() {
    TaxonImpl taxon = new TaxonImpl();
    taxon.setName("Medicago sativa");
    taxon.setPath("Biota | Plantae | Tracheophyta | Magnoliopsida | Fabales | Fabaceae | Medicago | Medicago sativa");
    taxon.setPathNames("Unranked|Kingdom|Phylum|Class|Order|Family|Genus|Species");
    TaxonImpl otherTaxon = new TaxonImpl();
    otherTaxon.setName("Medicago sativa");
    otherTaxon.setPath("Eukaryota|Streptophyta|Medicago|Medicago sativa|Papilionoideae|Trifolieae||Fabaceae|Viridiplantae|Fabales");
    otherTaxon.setPathNames("superkingdom|phylum|genus|species|subfamily|tribe|subclass|family|kingdom|order");
    assertFalse(TaxonUtil.likelyHomonym(taxon, otherTaxon));
}

Example 94 with TaxonImpl

use of org.eol.globi.domain.TaxonImpl in project eol-globi-data by jhpoelen.

the class TaxonUtilTest method notHomonym.

@Test
public void notHomonym() {
    TaxonImpl taxon = new TaxonImpl();
    taxon.setName("Lestes");
    taxon.setPath("Insecta|Lestidae|Lestes");
    taxon.setPathNames("class|family|genus");
    TaxonImpl otherTaxon = new TaxonImpl();
    otherTaxon.setName("Lestes");
    otherTaxon.setPath("Insecta|Lestidae|Lestes");
    otherTaxon.setPathNames("class|family|genus");
    assertThat(TaxonUtil.likelyHomonym(taxon, otherTaxon), is(false));
}

Example 95 with TaxonImpl

use of org.eol.globi.domain.TaxonImpl in project eol-globi-data by jhpoelen.

the class TaxonUtilTest method noHomonymNotEnoughPathInfo.

@Test
public void noHomonymNotEnoughPathInfo() {
    TaxonImpl taxon = new TaxonImpl();
    taxon.setName("Lestes");
    taxon.setPath("x|y|z");
    taxon.setPathNames("a|b|c");
    TaxonImpl otherTaxon = new TaxonImpl();
    otherTaxon.setName("Lestes");
    otherTaxon.setPath("Mammalia|Mesonychidae|Lestes");
    otherTaxon.setPathNames("class|family|genus");
    assertFalse(TaxonUtil.likelyHomonym(taxon, otherTaxon));
}