Examples with DatasetLocal org.eol.globi.service.DatasetLocal used on opensource projects

Example 16 with DatasetLocal

use of org.eol.globi.service.DatasetLocal in project eol-globi-data by jhpoelen.

the class StudyImporterForLifeWatchGreeceTest method readAssociations.

@Test
public void readAssociations() throws StudyImporterException {
    List<Study> studies = NodeUtil.findAllStudies(getGraphDb());
    assertThat(studies.size(), is(0));
    ParserFactoryLocal parserFactory = new ParserFactoryLocal();
    StudyImporterForLifeWatchGreece importer = new StudyImporterForLifeWatchGreece(parserFactory, nodeFactory);
    importer.setDataset(new DatasetLocal());
    importStudy(importer);
    studies = NodeUtil.findAllStudies(getGraphDb());
    assertThat(studies.size(), is(146));
    Set<String> taxa = new HashSet<String>();
    int totalPredatorPreyRelationships = 0;
    for (Study study : studies) {
        assertThat(study.getCitation(), is(notNullValue()));
        assertThat(study.getTitle(), containsString("greece"));
        Iterable<Relationship> specimens = NodeUtil.getSpecimens(study);
        for (Relationship collectedRel : specimens) {
            addTaxonNameForSpecimenNode(taxa, collectedRel.getEndNode());
            Specimen predatorSpecimen = new SpecimenNode(collectedRel.getEndNode());
            Iterable<Relationship> prey = NodeUtil.getStomachContents(predatorSpecimen);
            for (Relationship ateRel : prey) {
                totalPredatorPreyRelationships++;
                addTaxonNameForSpecimenNode(taxa, ateRel.getEndNode());
            }
        }
    }
    assertThat(taxa.contains("Aves"), is(true));
    assertThat(totalPredatorPreyRelationships, is(793));
}