Examples with CypherQuery org.eol.globi.util.CypherQuery used on opensource projects

Example 71 with CypherQuery

use of org.eol.globi.util.CypherQuery in project eol-globi-data by jhpoelen.

the class CypherQueryBuilderTest method findInteractionForSourceAndTargetTaxaLocations.

@Test
public void findInteractionForSourceAndTargetTaxaLocations() throws IOException {
    HashMap<String, String[]> params = new HashMap<String, String[]>() {

        {
            put("sourceTaxon", new String[] { "Actinopterygii", "Chordata" });
            put("targetTaxon", new String[] { "Arthropoda" });
            put("bbox", new String[] { "-67.87,12.79,-57.08,23.32" });
        }
    };
    CypherQuery query = buildInteractionQuery(params, MULTI_TAXON_ALL);
    assertThat(query.getQuery(), is("START sourceTaxon = node:taxonPaths({source_taxon_name}) " + EXPECTED_MATCH_CLAUSE_SPATIAL + "WHERE has(loc.latitude) AND has(loc.longitude) AND loc.latitude < 23.32 AND loc.longitude > -67.87 AND loc.latitude > 12.79 AND loc.longitude < -57.08 AND " + hasTargetTaxon("Arthropoda") + EXPECTED_RETURN_CLAUSE));
    assertThat(query.getParams().toString(), is(is("{source_taxon_name=path:\\\"Actinopterygii\\\" OR path:\\\"Chordata\\\", target_taxon_name=path:\\\"Arthropoda\\\"}")));
}

Example 72 with CypherQuery

use of org.eol.globi.util.CypherQuery in project eol-globi-data by jhpoelen.

the class CypherQueryBuilderTest method findInteractionsAccordingToWithSourceTaxaOnlyAndExactMatchOnlyIncludeObservations.

@Test
public void findInteractionsAccordingToWithSourceTaxaOnlyAndExactMatchOnlyIncludeObservations() throws IOException {
    HashMap<String, String[]> params = new HashMap<String, String[]>() {

        {
            put("exactNameMatchOnly", new String[] { "true" });
            put("sourceTaxon", new String[] { "Arthropoda" });
            put("targetTaxon", new String[] { "Insecta" });
            put("field", new String[] { "source_taxon_name", "target_taxon_name" });
        }
    };
    CypherQuery query = buildInteractionQuery(params, MULTI_TAXON_ALL);
    assertThat(query.getQuery(), is("START sourceTaxon = node:taxons({source_taxon_name}) " + EXPECTED_MATCH_CLAUSE_ALL + "WHERE (has(targetTaxon.name) AND targetTaxon.name IN ['Insecta'])" + " RETURN sourceTaxon.name as source_taxon_name,targetTaxon.name as target_taxon_name"));
    assertThat(query.getParams().toString(), is(is("{source_taxon_name=name:\\\"Arthropoda\\\", target_taxon_name=name:\\\"Insecta\\\"}")));
}

Example 73 with CypherQuery

use of org.eol.globi.util.CypherQuery in project eol-globi-data by jhpoelen.

the class CypherQueryBuilderTest method findInteractionsAccordingToWithTargetTaxaOnly2.

@Test
public void findInteractionsAccordingToWithTargetTaxaOnly2() throws IOException {
    HashMap<String, String[]> params = new HashMap<String, String[]>() {

        {
            put("accordingTo", new String[] { "http://inaturalist.org/bla" });
            put("targetTaxon", new String[] { "Arthropoda" });
            put("field", new String[] { "source_taxon_name", "target_taxon_name" });
        }
    };
    CypherQuery query = buildInteractionQuery(params, MULTI_TAXON_DISTINCT);
    assertThat(query.getQuery(), is("START study = node:studies('*:*') WHERE (has(study.externalId) AND study.externalId =~ {accordingTo}) WITH study " + EXPECTED_MATCH_CLAUSE_DISTINCT + "WHERE " + hasTargetTaxon("Arthropoda") + "WITH distinct targetTaxon, interaction.label as iType, sourceTaxon RETURN sourceTaxon.name as source_taxon_name,targetTaxon.name as target_taxon_name"));
    assertThat(query.getParams().toString(), is(is("{accordingTo=(\\\\Qhttp://inaturalist.org/bla\\\\E), target_taxon_name=path:\\\"Arthropoda\\\"}")));
}

Example 74 with CypherQuery

use of org.eol.globi.util.CypherQuery in project eol-globi-data by jhpoelen.

the class CypherQueryBuilderTest method assertInteractionForSourceAndTargetTaxaLocationsDistinctTaxonNamesOnly.

protected void assertInteractionForSourceAndTargetTaxaLocationsDistinctTaxonNamesOnly(Map<String, String[]> fieldParams) {
    HashMap<String, String[]> params = new HashMap<String, String[]>() {

        {
            put("sourceTaxon", new String[] { "Actinopterygii", "Chordata" });
            put("targetTaxon", new String[] { "Arthropoda" });
            put("bbox", new String[] { "-67.87,12.79,-57.08,23.32" });
        }
    };
    params.putAll(fieldParams);
    CypherQuery query = buildInteractionQuery(params, MULTI_TAXON_DISTINCT);
    assertThat(query.getQuery(), is("START sourceTaxon = node:taxonPaths({source_taxon_name}) " + EXPECTED_MATCH_CLAUSE_SPATIAL + "WHERE has(loc.latitude) AND has(loc.longitude) AND loc.latitude < 23.32 AND loc.longitude > -67.87 AND loc.latitude > 12.79 AND loc.longitude < -57.08 AND " + hasTargetTaxon("Arthropoda") + "WITH distinct targetTaxon, interaction.label as iType, sourceTaxon RETURN sourceTaxon.name as source_taxon_name,targetTaxon.name as target_taxon_name"));
    assertThat(query.getParams().toString(), is(is("{source_taxon_name=path:\\\"Actinopterygii\\\" OR path:\\\"Chordata\\\", target_taxon_name=path:\\\"Arthropoda\\\"}")));
}

Example 75 with CypherQuery

use of org.eol.globi.util.CypherQuery in project eol-globi-data by jhpoelen.

the class CypherQueryBuilderTest method findTaxaAtLocationsDistinctNoSpatialParam.

@Test
public void findTaxaAtLocationsDistinctNoSpatialParam() throws IOException {
    HashMap<String, String[]> params = new HashMap<String, String[]>() {

        {
        }
    };
    CypherQuery query = CypherQueryBuilder.createDistinctTaxaInLocationQuery(params);
    assertThat(query.getQuery(), is("START taxon = node:taxons('*:*') " + "RETURN distinct(taxon.name?) as taxon_name, taxon.commonNames? as taxon_common_names, taxon.externalId? as taxon_external_id, taxon.path? as taxon_path, taxon.pathIds? as taxon_path_ids, taxon.pathNames? as taxon_path_ranks"));
    assertThat(query.getParams().isEmpty(), is(true));
}