Examples with JobDefinitionType org.ggf.schemas.jsdl.x2005.x11.jsdl.JobDefinitionType used on opensource projects

Example 16 with JobDefinitionType

use of org.ggf.schemas.jsdl.x2005.x11.jsdl.JobDefinitionType in project airavata by apache.

the class JSDLUtils method getOrCreatePOSIXApplication.

public static POSIXApplicationType getOrCreatePOSIXApplication(JobDefinitionType value) {
    ApplicationType application = getOrCreateApplication(value);
    if (getHPCProfileApplication(value) != null) {
        // TODO handle: not creating POSIX element if HPCProfile already exists
        return getPOSIXApplication(value);
    }
    if (getPOSIXApplication(value) == null) {
        XmlCursor acursor = application.newCursor();
        acursor.toEndToken();
        acursor.insertElement(POSIX_APPLICATION);
        acursor.dispose();
    }
    return getPOSIXApplication(value);
}

Example 17 with JobDefinitionType

use of org.ggf.schemas.jsdl.x2005.x11.jsdl.JobDefinitionType in project airavata by apache.

the class ApplicationProcessor method createGenericApplication.

public static void createGenericApplication(JobDefinitionType value, String appName) {
    ApplicationType appType = JSDLUtils.getOrCreateApplication(value);
    appType.setApplicationName(appName);
}

Example 18 with JobDefinitionType

use of org.ggf.schemas.jsdl.x2005.x11.jsdl.JobDefinitionType in project airavata by apache.

the class ApplicationProcessor method generateJobSpecificAppElements.

public static void generateJobSpecificAppElements(JobDefinitionType value, JobExecutionContext context) {
    String userName = getUserNameFromContext(context);
    // if (userName.equalsIgnoreCase("admin")){
    // userName = "CN=zdv575, O=Ultrascan Gateway, C=DE";
    // }
    ApplicationDeploymentDescription appDep = context.getApplicationContext().getApplicationDeploymentDescription();
    String appname = context.getApplicationContext().getApplicationInterfaceDescription().getApplicationName();
    ApplicationParallelismType parallelism = appDep.getParallelism();
    ApplicationType appType = JSDLUtils.getOrCreateApplication(value);
    appType.setApplicationName(appname);
    // if (appDep.getSetEnvironment().size() > 0) {
    // createApplicationEnvironment(value, appDep.getSetEnvironment(), parallelism);
    // }
    // 
    String stdout = context.getStandardOutput();
    String stderr = context.getStandardError();
    if (stdout != null) {
        stdout = stdout.substring(stdout.lastIndexOf('/') + 1);
    }
    if (stderr != null) {
        stderr = stderr.substring(stderr.lastIndexOf('/') + 1);
    }
    stdout = (stdout == null || stdout.equals("")) ? "stdout" : stdout;
    stderr = (stdout == null || stderr.equals("")) ? "stderr" : stderr;
    if (appDep.getExecutablePath() != null) {
        FileNameType fNameType = FileNameType.Factory.newInstance();
        fNameType.setStringValue(appDep.getExecutablePath());
        if (isParallelJob(context)) {
            JSDLUtils.getOrCreateSPMDApplication(value).setExecutable(fNameType);
            if (parallelism.equals(ApplicationParallelismType.OPENMP_MPI)) {
                JSDLUtils.getSPMDApplication(value).setSPMDVariation(SPMDVariations.OpenMPI.value());
            } else if (parallelism.equals(ApplicationParallelismType.MPI)) {
                JSDLUtils.getSPMDApplication(value).setSPMDVariation(SPMDVariations.MPI.value());
            }
            // setting number of processes
            try {
                String np = getInputAsString(context, BESConstants.NUMBER_OF_PROCESSES);
                if ((np != null) && (Integer.parseInt(np) > 0)) {
                    NumberOfProcessesType num = NumberOfProcessesType.Factory.newInstance();
                    num.setStringValue(np);
                    JSDLUtils.getSPMDApplication(value).setNumberOfProcesses(num);
                }
            } catch (RuntimeException np) {
            // do nothing
            }
            try {
                // setting processes per host
                String pphost = getInputAsString(context, BESConstants.PROCESSES_PER_HOST);
                if ((pphost != null) && (Integer.parseInt(pphost) > 0)) {
                    ProcessesPerHostType pph = ProcessesPerHostType.Factory.newInstance();
                    pph.setStringValue(String.valueOf(pphost));
                    JSDLUtils.getSPMDApplication(value).setProcessesPerHost(pph);
                }
            } catch (RuntimeException np) {
            // do nothing
            }
            int totalThreadCount = context.getTaskData().getTaskScheduling().getNumberOfThreads();
            // we take it as threads per processes
            if (totalThreadCount > 0) {
                ThreadsPerProcessType tpp = ThreadsPerProcessType.Factory.newInstance();
                tpp.setStringValue(String.valueOf(totalThreadCount));
                JSDLUtils.getSPMDApplication(value).setThreadsPerProcess(tpp);
            }
            if (userName != null) {
                UserNameType userNameType = UserNameType.Factory.newInstance();
                userNameType.setStringValue(userName);
                JSDLUtils.getSPMDApplication(value).setUserName(userNameType);
            }
            if (stdout != null) {
                FileNameType fName = FileNameType.Factory.newInstance();
                fName.setStringValue(stdout);
                JSDLUtils.getOrCreateSPMDApplication(value).setOutput(fName);
            }
            if (stderr != null) {
                FileNameType fName = FileNameType.Factory.newInstance();
                fName.setStringValue(stderr);
                JSDLUtils.getOrCreateSPMDApplication(value).setError(fName);
            }
        } else {
            JSDLUtils.getOrCreatePOSIXApplication(value).setExecutable(fNameType);
            if (userName != null) {
                UserNameType userNameType = UserNameType.Factory.newInstance();
                userNameType.setStringValue(userName);
                JSDLUtils.getOrCreatePOSIXApplication(value).setUserName(userNameType);
            }
            if (stdout != null) {
                FileNameType fName = FileNameType.Factory.newInstance();
                fName.setStringValue(stdout);
                JSDLUtils.getOrCreatePOSIXApplication(value).setOutput(fName);
            }
            if (stderr != null) {
                FileNameType fName = FileNameType.Factory.newInstance();
                fName.setStringValue(stderr);
                JSDLUtils.getOrCreatePOSIXApplication(value).setError(fName);
            }
        }
    }
}

Example 19 with JobDefinitionType

use of org.ggf.schemas.jsdl.x2005.x11.jsdl.JobDefinitionType in project airavata by apache.

the class JSDLGenerator method buildJSDLInstance.

public static synchronized JobDefinitionDocument buildJSDLInstance(JobExecutionContext context, String smsUrl, Object jobDirectoryMode) throws Exception {
    JobDefinitionDocument jobDefDoc = JobDefinitionDocument.Factory.newInstance();
    JobDefinitionType value = jobDefDoc.addNewJobDefinition();
    // build Identification
    createJobIdentification(value, context);
    ResourceProcessor.generateResourceElements(value, context);
    ApplicationProcessor.generateJobSpecificAppElements(value, context);
    UASDataStagingProcessor.generateDataStagingElements(value, context, smsUrl);
    return jobDefDoc;
}

Example 20 with JobDefinitionType

use of org.ggf.schemas.jsdl.x2005.x11.jsdl.JobDefinitionType in project airavata by apache.

the class JSDLUtils method getPOSIXApplication.

public static POSIXApplicationType getPOSIXApplication(JobDefinitionType value) {
    if (value != null && value.getJobDescription() != null && value.getJobDescription().isSetApplication()) {
        XmlCursor acursor = value.getJobDescription().getApplication().newCursor();
        if (acursor.toFirstChild()) {
            do {
                if (acursor.getName().equals(POSIX_APPLICATION)) {
                    XmlObject result = acursor.getObject();
                    acursor.dispose();
                    return (POSIXApplicationType) result;
                }
            } while (acursor.toNextSibling());
            acursor.dispose();
            return null;
        } else {
            acursor.dispose();
            return null;
        }
    } else {
        return null;
    }
}