Examples with DatasetImpl org.globalbioticinteractions.dataset.DatasetImpl used on opensource projects

Example 81 with DatasetImpl

use of org.globalbioticinteractions.dataset.DatasetImpl in project eol-globi-data by jhpoelen.

the class TableInteractionListenerProxyTest method interactionListenerTest.

@Test
public void interactionListenerTest() throws IOException, StudyImporterException {
    final List<Map<String, String>> links = new ArrayList<Map<String, String>>();
    JsonNode config = new ObjectMapper().readTree("{ \"dcterms:bibliographicCitation\":\"some citation\", \"url\":\"https://example.org/someResource\" }");
    DatasetImpl dataset = new DatasetImpl(null, URI.create("http://someurl"), inStream -> inStream);
    dataset.setConfig(config);
    final TableInteractionListenerProxy listener = new TableInteractionListenerProxy(dataset, new InteractionListener() {

        @Override
        public void on(Map<String, String> interaction) throws StudyImporterException {
            links.add(interaction);
        }
    });
    listener.on(new HashMap<>());
    assertThat(links.size(), is(1));
    assertThat(links.get(0).get(DatasetImporterForTSV.DATASET_CITATION), startsWith("some citation. Accessed at <https://example.org/someResource> on "));
    assertThat(links.get(0).get(DatasetImporterForTSV.REFERENCE_CITATION), startsWith("some citation. Accessed at <https://example.org/someResource> on "));
}

Example 82 with DatasetImpl

use of org.globalbioticinteractions.dataset.DatasetImpl in project eol-globi-data by jhpoelen.

the class TableInteractionListenerProxyTest method interactionListener2Test.

@Test
public void interactionListener2Test() throws IOException, StudyImporterException {
    final List<Map<String, String>> links = new ArrayList<Map<String, String>>();
    JsonNode config = new ObjectMapper().readTree("{ \"dcterms:bibliographicCitation\":\"some citation\", \"url\":\"https://example.org/someResource\" }");
    DatasetImpl dataset = new DatasetImpl(null, URI.create("http://someurl"), inStream -> inStream);
    dataset.setConfig(config);
    final TableInteractionListenerProxy listener = new TableInteractionListenerProxy(dataset, new InteractionListener() {

        @Override
        public void on(Map<String, String> interaction) throws StudyImporterException {
            links.add(interaction);
        }
    });
    listener.on(new HashMap<String, String>() {

        {
            put(DatasetImporterForTSV.REFERENCE_CITATION, "some ref");
        }
    });
    assertThat(links.size(), is(1));
    assertThat(links.get(0).get(DatasetImporterForTSV.DATASET_CITATION), startsWith("some citation. Accessed at <https://example.org/someResource> on "));
    assertThat(links.get(0).get(DatasetImporterForTSV.REFERENCE_CITATION), startsWith("some ref"));
}

Example 83 with DatasetImpl

use of org.globalbioticinteractions.dataset.DatasetImpl in project eol-globi-data by jhpoelen.

the class DatasetTest method unknownResourceURL.

@Test(expected = IOException.class)
public void unknownResourceURL() throws IOException, URISyntaxException {
    URL resource = getClass().getResource("archive.zip");
    File archive = new File(resource.toURI());
    assertThat(archive.exists(), is(true));
    URI parentDir = archive.getParentFile().toURI();
    Dataset dataset = new DatasetImpl("some/namespace", parentDir, inStream -> inStream);
    assertThat(dataset.retrieve(URI.create("archivezz.zip")), is(notNullValue()));
}