Examples with DOI org.globalbioticinteractions.doi.DOI used on opensource projects

Example 56 with DOI

use of org.globalbioticinteractions.doi.DOI in project eol-globi-data by jhpoelen.

the class ExporterSiteMapForCitationsTest method writeSiteMapWithCitations.

@Test
public void writeSiteMapWithCitations() throws StudyImporterException, IOException {
    final Study study = nodeFactory.getOrCreateStudy(new StudyImpl("title", new DOI("some", "doi"), "citation123&bla"));
    assertThat(study.getExternalId(), is("https://doi.org/10.some/doi"));
    final File baseDirCitations = createBaseDir("target/sitemap/citations");
    final GraphExporter siteMapForCitationsExporter = new ExporterSiteMapForCitations();
    siteMapForCitationsExporter.export(getGraphDb(), baseDirCitations);
    final String substring = "http://www.globalbioticinteractions.org/?accordingTo=" + "https://doi.org/10.some/doi";
    assertSiteMap(baseDirCitations, substring, "https://depot.globalbioticinteractions.org/snapshot/target/data/sitemap/citations/sitemap.xml.gz");
}

Example 57 with DOI

use of org.globalbioticinteractions.doi.DOI in project eol-globi-data by jhpoelen.

the class NodeFactoryNeo4jTest method createStudy.

@Test
public void createStudy() throws NodeFactoryException {
    StudyNode study = getNodeFactory().getOrCreateStudy(new StudyImpl("myTitle", new DOI("myDoi", "123"), null));
    assertThat(study.getDOI().toString(), is("10.myDoi/123"));
    assertThat(study.getExternalId(), is("https://doi.org/10.myDoi/123"));
}

Example 58 with DOI

use of org.globalbioticinteractions.doi.DOI in project eol-globi-data by jhpoelen.

the class NodeFactoryNeo4jTest method createStudyWithDifferentExternalIdInDifferentNamespace.

@Test
public void createStudyWithDifferentExternalIdInDifferentNamespace() throws NodeFactoryException {
    StudyImpl study1 = new StudyImpl("myTitle", new DOI("myDoi", "123"), null);
    study1.setOriginatingDataset(new DatasetImpl("name/space", URI.create("foo:bar"), is -> is));
    study1.setExternalId("foo:bar");
    StudyNode study1Created = getNodeFactory().getOrCreateStudy(study1);
    StudyImpl study2 = new StudyImpl("myTitle", new DOI("myDoi", "123"), null);
    study2.setOriginatingDataset(new DatasetImpl("name/spacz", URI.create("foo:bar"), is -> is));
    study2.setExternalId("foo:baz");
    StudyNode study2Created = getNodeFactory().getOrCreateStudy(study2);
    assertThat(study1Created.getExternalId(), is("foo:bar"));
    assertThat(study1Created.getOriginatingDataset().getNamespace(), is("name/space"));
    assertThat(study2Created.getExternalId(), is("foo:baz"));
    assertThat(study2Created.getOriginatingDataset().getNamespace(), is("name/spacz"));
}

Example 59 with DOI

use of org.globalbioticinteractions.doi.DOI in project eol-globi-data by jhpoelen.

the class NodeFactoryIT method createStudy.

@Test
public void createStudy() throws NodeFactoryException {
    Study study = nodeFactory.getOrCreateStudy(new StudyImpl("bla", new DOI("1111", "j.1469-7998.1966.tb02907.x"), ExternalIdUtil.toCitation(null, "descr", null)));
    assertThat(study.getDOI().toURI().toString(), is("https://doi.org/10.1111/j.1469-7998.1966.tb02907.x"));
    assertThat(study.getCitation(), is("descr"));
}

Example 60 with DOI

use of org.globalbioticinteractions.doi.DOI in project eol-globi-data by jhpoelen.

the class ExportCitationsTest method exportCitations.

@Test
public void exportCitations() throws IOException, NodeFactoryException {
    StringWriter writer = new StringWriter();
    getNodeFactory().getOrCreateStudy(new StudyImpl("some title", new DOI("some", "doi"), "some citation"));
    getNodeFactory().getOrCreateStudy(new StudyImpl("some other title", new DOI("some", "otherdoi"), "some other citation"));
    ExportUtil.export(ExportUtil.AppenderWriter.of(writer), getGraphDb(), ExportCitations.CYPHER_QUERY);
    assertThat(writer.toString(), Is.is("doi\tcitation" + "\n10.some/doi\tsome citation" + "\n10.some/otherdoi\tsome other citation\n"));
}