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Example 26 with Attachment

use of org.hl7.fhir.dstu2.model.Attachment in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method renderLeaf.

private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints) throws FHIRException, UnsupportedEncodingException, IOException {
    if (ew == null)
        return;
    Base e = ew.getBase();
    if (e instanceof StringType)
        x.addText(((StringType) e).getValue());
    else if (e instanceof CodeType)
        x.addText(((CodeType) e).getValue());
    else if (e instanceof IdType)
        x.addText(((IdType) e).getValue());
    else if (e instanceof Extension)
        x.addText("Extensions: Todo");
    else if (e instanceof InstantType)
        x.addText(((InstantType) e).toHumanDisplay());
    else if (e instanceof DateTimeType)
        x.addText(((DateTimeType) e).toHumanDisplay());
    else if (e instanceof Base64BinaryType)
        x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
    else if (e instanceof org.hl7.fhir.dstu2016may.model.DateType)
        x.addText(((org.hl7.fhir.dstu2016may.model.DateType) e).toHumanDisplay());
    else if (e instanceof Enumeration) {
        Object ev = ((Enumeration<?>) e).getValue();
        // todo: look up a display name if there is one
        x.addText(ev == null ? "" : ev.toString());
    } else if (e instanceof BooleanType)
        x.addText(((BooleanType) e).getValue().toString());
    else if (e instanceof CodeableConcept) {
        renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
    } else if (e instanceof Coding) {
        renderCoding((Coding) e, x, showCodeDetails);
    } else if (e instanceof Annotation) {
        renderAnnotation((Annotation) e, x);
    } else if (e instanceof Identifier) {
        renderIdentifier((Identifier) e, x);
    } else if (e instanceof org.hl7.fhir.dstu2016may.model.IntegerType) {
        x.addText(Integer.toString(((org.hl7.fhir.dstu2016may.model.IntegerType) e).getValue()));
    } else if (e instanceof org.hl7.fhir.dstu2016may.model.DecimalType) {
        x.addText(((org.hl7.fhir.dstu2016may.model.DecimalType) e).getValue().toString());
    } else if (e instanceof HumanName) {
        renderHumanName((HumanName) e, x);
    } else if (e instanceof SampledData) {
        renderSampledData((SampledData) e, x);
    } else if (e instanceof Address) {
        renderAddress((Address) e, x);
    } else if (e instanceof ContactPoint) {
        renderContactPoint((ContactPoint) e, x);
    } else if (e instanceof UriType) {
        renderUri((UriType) e, x);
    } else if (e instanceof Timing) {
        renderTiming((Timing) e, x);
    } else if (e instanceof Range) {
        renderRange((Range) e, x);
    } else if (e instanceof Quantity) {
        renderQuantity((Quantity) e, x, showCodeDetails);
    } else if (e instanceof Ratio) {
        renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
        x.addText("/");
        renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
    } else if (e instanceof Period) {
        Period p = (Period) e;
        x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
        x.addText(" --> ");
        x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        XhtmlNode c = x;
        ResourceWithReference tr = null;
        if (r.hasReferenceElement()) {
            tr = resolveReference(res, r.getReference());
            if (!r.getReference().startsWith("#")) {
                if (tr != null && tr.getReference() != null)
                    c = x.addTag("a").attribute("href", tr.getReference());
                else
                    c = x.addTag("a").attribute("href", r.getReference());
            }
        }
        // what to display: if text is provided, then that. if the reference was resolved, then show the generated narrative
        if (r.hasDisplayElement()) {
            c.addText(r.getDisplay());
            if (tr != null) {
                c.addText(". Generated Summary: ");
                generateResourceSummary(c, tr.getResource(), true, r.getReference().startsWith("#"));
            }
        } else if (tr != null) {
            generateResourceSummary(c, tr.getResource(), r.getReference().startsWith("#"), r.getReference().startsWith("#"));
        } else {
            c.addText(r.getReference());
        }
    } else if (e instanceof Resource) {
        return;
    } else if (e instanceof ElementDefinition) {
        x.addText("todo-bundle");
    } else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta))
        throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet");
}
Also used : Meta(org.hl7.fhir.dstu2016may.model.Meta) Base64(org.apache.commons.codec.binary.Base64) Address(org.hl7.fhir.dstu2016may.model.Address) StringType(org.hl7.fhir.dstu2016may.model.StringType) NotImplementedException(org.apache.commons.lang3.NotImplementedException) Attachment(org.hl7.fhir.dstu2016may.model.Attachment) UriType(org.hl7.fhir.dstu2016may.model.UriType) XhtmlNode(org.hl7.fhir.utilities.xhtml.XhtmlNode) HumanName(org.hl7.fhir.dstu2016may.model.HumanName) ContactPoint(org.hl7.fhir.dstu2016may.model.ContactPoint) Identifier(org.hl7.fhir.dstu2016may.model.Identifier) Coding(org.hl7.fhir.dstu2016may.model.Coding) Narrative(org.hl7.fhir.dstu2016may.model.Narrative) SampledData(org.hl7.fhir.dstu2016may.model.SampledData) Ratio(org.hl7.fhir.dstu2016may.model.Ratio) ElementDefinition(org.hl7.fhir.dstu2016may.model.ElementDefinition) InstantType(org.hl7.fhir.dstu2016may.model.InstantType) Enumeration(org.hl7.fhir.dstu2016may.model.Enumeration) Reference(org.hl7.fhir.dstu2016may.model.Reference) BooleanType(org.hl7.fhir.dstu2016may.model.BooleanType) Resource(org.hl7.fhir.dstu2016may.model.Resource) DomainResource(org.hl7.fhir.dstu2016may.model.DomainResource) Quantity(org.hl7.fhir.dstu2016may.model.Quantity) Period(org.hl7.fhir.dstu2016may.model.Period) Range(org.hl7.fhir.dstu2016may.model.Range) Base(org.hl7.fhir.dstu2016may.model.Base) Annotation(org.hl7.fhir.dstu2016may.model.Annotation) IdType(org.hl7.fhir.dstu2016may.model.IdType) Extension(org.hl7.fhir.dstu2016may.model.Extension) DateTimeType(org.hl7.fhir.dstu2016may.model.DateTimeType) CodeType(org.hl7.fhir.dstu2016may.model.CodeType) EventTiming(org.hl7.fhir.dstu2016may.model.Timing.EventTiming) Timing(org.hl7.fhir.dstu2016may.model.Timing) Base64BinaryType(org.hl7.fhir.dstu2016may.model.Base64BinaryType) CodeableConcept(org.hl7.fhir.dstu2016may.model.CodeableConcept)

Example 27 with Attachment

use of org.hl7.fhir.dstu2.model.Attachment in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeAttachment.

protected void composeAttachment(Complex parent, String parentType, String name, Attachment element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeElement(t, "Attachment", name, element, index);
    if (element.hasContentTypeElement())
        composeCode(t, "Attachment", "contentType", element.getContentTypeElement(), -1);
    if (element.hasLanguageElement())
        composeCode(t, "Attachment", "language", element.getLanguageElement(), -1);
    if (element.hasDataElement())
        composeBase64Binary(t, "Attachment", "data", element.getDataElement(), -1);
    if (element.hasUrlElement())
        composeUrl(t, "Attachment", "url", element.getUrlElement(), -1);
    if (element.hasSizeElement())
        composeUnsignedInt(t, "Attachment", "size", element.getSizeElement(), -1);
    if (element.hasHashElement())
        composeBase64Binary(t, "Attachment", "hash", element.getHashElement(), -1);
    if (element.hasTitleElement())
        composeString(t, "Attachment", "title", element.getTitleElement(), -1);
    if (element.hasCreationElement())
        composeDateTime(t, "Attachment", "creation", element.getCreationElement(), -1);
}
Also used : Complex(org.hl7.fhir.r4.utils.formats.Turtle.Complex)

Example 28 with Attachment

use of org.hl7.fhir.dstu2.model.Attachment in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeSubstancePolymerSubstancePolymerRepeatRepeatUnitStructuralRepresentationComponent.

protected void composeSubstancePolymerSubstancePolymerRepeatRepeatUnitStructuralRepresentationComponent(Complex parent, String parentType, String name, SubstancePolymer.SubstancePolymerRepeatRepeatUnitStructuralRepresentationComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "structuralRepresentation", name, element, index);
    if (element.hasType())
        composeCodeableConcept(t, "SubstancePolymer", "type", element.getType(), -1);
    if (element.hasRepresentationElement())
        composeString(t, "SubstancePolymer", "representation", element.getRepresentationElement(), -1);
    if (element.hasAttachment())
        composeAttachment(t, "SubstancePolymer", "attachment", element.getAttachment(), -1);
}
Also used : Complex(org.hl7.fhir.r4.utils.formats.Turtle.Complex)

Example 29 with Attachment

use of org.hl7.fhir.dstu2.model.Attachment in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeSubstanceSpecificationSubstanceSpecificationStructureRepresentationComponent.

protected void composeSubstanceSpecificationSubstanceSpecificationStructureRepresentationComponent(Complex parent, String parentType, String name, SubstanceSpecification.SubstanceSpecificationStructureRepresentationComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "representation", name, element, index);
    if (element.hasType())
        composeCodeableConcept(t, "SubstanceSpecification", "type", element.getType(), -1);
    if (element.hasRepresentationElement())
        composeString(t, "SubstanceSpecification", "representation", element.getRepresentationElement(), -1);
    if (element.hasAttachment())
        composeAttachment(t, "SubstanceSpecification", "attachment", element.getAttachment(), -1);
}
Also used : Complex(org.hl7.fhir.r4.utils.formats.Turtle.Complex)

Example 30 with Attachment

use of org.hl7.fhir.dstu2.model.Attachment in project org.hl7.fhir.core by hapifhir.

the class QuestionnaireBuilder method processDataType.

private void processDataType(StructureDefinition profile, QuestionnaireItemComponent group, ElementDefinition element, String path, TypeRefComponent t, List<QuestionnaireResponse.QuestionnaireResponseItemComponent> answerGroups, List<ElementDefinition> parents) throws FHIRException {
    String tc = t.getWorkingCode();
    if (tc.equals("code"))
        addCodeQuestions(group, element, path, answerGroups);
    else if (Utilities.existsInList(tc, "string", "id", "oid", "uuid", "markdown"))
        addStringQuestions(group, element, path, answerGroups);
    else if (Utilities.existsInList(tc, "uri", "url", "canonical"))
        addUriQuestions(group, element, path, answerGroups);
    else if (tc.equals("boolean"))
        addBooleanQuestions(group, element, path, answerGroups);
    else if (tc.equals("decimal"))
        addDecimalQuestions(group, element, path, answerGroups);
    else if (tc.equals("dateTime") || tc.equals("date"))
        addDateTimeQuestions(group, element, path, answerGroups);
    else if (tc.equals("instant"))
        addInstantQuestions(group, element, path, answerGroups);
    else if (tc.equals("time"))
        addTimeQuestions(group, element, path, answerGroups);
    else if (tc.equals("CodeableConcept"))
        addCodeableConceptQuestions(group, element, path, answerGroups);
    else if (tc.equals("Period"))
        addPeriodQuestions(group, element, path, answerGroups);
    else if (tc.equals("Ratio"))
        addRatioQuestions(group, element, path, answerGroups);
    else if (tc.equals("HumanName"))
        addHumanNameQuestions(group, element, path, answerGroups);
    else if (tc.equals("Address"))
        addAddressQuestions(group, element, path, answerGroups);
    else if (tc.equals("ContactPoint"))
        addContactPointQuestions(group, element, path, answerGroups);
    else if (tc.equals("Identifier"))
        addIdentifierQuestions(group, element, path, answerGroups);
    else if (tc.equals("integer") || tc.equals("positiveInt") || tc.equals("unsignedInt"))
        addIntegerQuestions(group, element, path, answerGroups);
    else if (tc.equals("Coding"))
        addCodingQuestions(group, element, path, answerGroups);
    else if (Utilities.existsInList(tc, "Quantity", "Count", "Age", "Duration", "Distance", "Money"))
        addQuantityQuestions(group, element, path, answerGroups);
    else if (tc.equals("Money"))
        addMoneyQuestions(group, element, path, answerGroups);
    else if (tc.equals("Reference"))
        addReferenceQuestions(group, element, path, t.getTargetProfile(), answerGroups);
    else if (tc.equals("Duration"))
        addDurationQuestions(group, element, path, answerGroups);
    else if (tc.equals("base64Binary"))
        addBinaryQuestions(group, element, path, answerGroups);
    else if (tc.equals("Attachment"))
        addAttachmentQuestions(group, element, path, answerGroups);
    else if (tc.equals("Age"))
        addAgeQuestions(group, element, path, answerGroups);
    else if (tc.equals("Range"))
        addRangeQuestions(group, element, path, answerGroups);
    else if (tc.equals("Timing"))
        addTimingQuestions(group, element, path, answerGroups);
    else if (tc.equals("Annotation"))
        addAnnotationQuestions(group, element, path, answerGroups);
    else if (tc.equals("SampledData"))
        addSampledDataQuestions(group, element, path, answerGroups);
    else if (tc.equals("Extension")) {
        if (t.hasProfile())
            addExtensionQuestions(profile, group, element, path, t.getProfile().get(0).getValue(), answerGroups, parents);
    } else if (tc.equals("SampledData"))
        addSampledDataQuestions(group, element, path, answerGroups);
    else if (!tc.equals("Narrative") && !tc.equals("Resource") && !tc.equals("Meta") && !tc.equals("Signature")) {
        StructureDefinition sd = context.fetchTypeDefinition(tc);
        if (sd == null)
            throw new NotImplementedException("Unhandled Data Type: " + tc + " on element " + element.getPath());
        buildGroup(group, sd, sd.getSnapshot().getElementFirstRep(), parents, answerGroups);
    }
}
Also used : StructureDefinition(org.hl7.fhir.r4b.model.StructureDefinition) NotImplementedException(org.apache.commons.lang3.NotImplementedException)

Aggregations

Attachment (org.hl7.fhir.r4.model.Attachment)33 ArrayList (java.util.ArrayList)32 Attachment (com.ibm.cloud.cloudant.v1.model.Attachment)17 Reference (org.hl7.fhir.r4.model.Reference)17 Test (org.testng.annotations.Test)17 DocumentRevisionStatus (com.ibm.cloud.cloudant.v1.model.DocumentRevisionStatus)16 Revisions (com.ibm.cloud.cloudant.v1.model.Revisions)16 XhtmlNode (org.hl7.fhir.utilities.xhtml.XhtmlNode)16 NotImplementedException (org.apache.commons.lang3.NotImplementedException)14 HashMap (java.util.HashMap)12 Coding (org.hl7.fhir.r4.model.Coding)11 Document (com.ibm.cloud.cloudant.v1.model.Document)10 List (java.util.List)10 DiagnosticReport (org.hl7.fhir.r4.model.DiagnosticReport)10 BundleEntryComponent (org.hl7.fhir.r4.model.Bundle.BundleEntryComponent)9 DocumentReference (org.hl7.fhir.r4.model.DocumentReference)9 Observation (org.hl7.fhir.r4.model.Observation)9 IBaseResource (org.hl7.fhir.instance.model.api.IBaseResource)8 Resource (org.hl7.fhir.r4.model.Resource)8 DesignDocument (com.ibm.cloud.cloudant.v1.model.DesignDocument)7